HEADER TRANSFERASE 15-MAY-03 1UEH TITLE E. COLI UNDECAPRENYL PYROPHOSPHATE SYNTHASE IN COMPLEX WITH TRITON X- TITLE 2 100, MAGNESIUM AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNDECAPRENYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET32XA-LIC KEYWDS PARALLEL ALPHA-BETA, ROSSMANN-LIKE FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.-Y.CHANG,T.-P.KO,P.-H.LIANG,A.H.-J.WANG REVDAT 4 25-OCT-23 1UEH 1 REMARK LINK REVDAT 3 13-JUL-11 1UEH 1 VERSN REVDAT 2 24-FEB-09 1UEH 1 VERSN REVDAT 1 12-AUG-03 1UEH 0 JRNL AUTH S.-Y.CHANG,T.-P.KO,P.-H.LIANG,A.H.-J.WANG JRNL TITL CATALYTIC MECHANISM REVEALED BY THE CRYSTAL STRUCTURE OF JRNL TITL 2 UNDECAPRENYL PYROPHOSPHATE SYNTHASE IN COMPLEX WITH SULFATE, JRNL TITL 3 MAGNESIUM, AND TRITON JRNL REF J.BIOL.CHEM. V. 278 29298 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12756244 JRNL DOI 10.1074/JBC.M302687200 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 48741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2446 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2569 REMARK 3 BIN FREE R VALUE : 0.2819 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.650 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.955 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL17B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.860 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.89 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRITON X-100, MAGNESIUM CHLORIDE, REMARK 280 AMMONIUM SULFATE, MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.98100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.87800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.71100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.87800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.98100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.71100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENZYME IS A HOMODIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 TRP A 75 REMARK 465 ASN A 76 REMARK 465 ARG A 77 REMARK 465 PRO A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 VAL A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 LEU A 85 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 PHE A 243 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 PRO A 248 REMARK 465 GLY A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 THR A 252 REMARK 465 ALA A 253 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 GLU B 11 REMARK 465 LYS B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 HIS B 16 REMARK 465 ARG B 242 REMARK 465 PHE B 243 REMARK 465 GLY B 244 REMARK 465 GLY B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 PRO B 248 REMARK 465 GLY B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 ALA B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1013 O HOH A 1118 2.07 REMARK 500 O HOH A 1096 O HOH A 1186 2.09 REMARK 500 O HOH B 977 O HOH B 978 2.12 REMARK 500 O HOH A 967 O HOH A 969 2.12 REMARK 500 O HOH B 933 O HOH B 1233 2.13 REMARK 500 O HOH B 933 O HOH B 1247 2.14 REMARK 500 O HOH A 932 O HOH A 1025 2.16 REMARK 500 O HOH A 1095 O HOH A 1145 2.17 REMARK 500 O HOH A 1014 O HOH A 1031 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 86 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 199 61.85 -113.99 REMARK 500 PHE A 204 -146.79 -80.74 REMARK 500 LEU A 206 -60.26 -122.63 REMARK 500 HIS B 199 65.69 -109.73 REMARK 500 PHE B 204 -145.36 -81.79 REMARK 500 LEU B 206 -58.73 -126.79 REMARK 500 ASP B 225 -167.44 -124.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OXN B 801 REMARK 610 OXN B 802 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 ND1 REMARK 620 2 HOH A1205 O 83.5 REMARK 620 3 HOH A1206 O 91.4 90.8 REMARK 620 4 GLU B 213 OE2 100.6 173.2 94.5 REMARK 620 5 HOH B1292 O 93.9 85.2 173.0 89.0 REMARK 620 6 HOH B1293 O 165.4 83.1 83.2 93.3 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 213 OE2 REMARK 620 2 HOH A1207 O 88.9 REMARK 620 3 HOH A1208 O 89.5 93.3 REMARK 620 4 HIS B 199 ND1 103.3 96.2 164.2 REMARK 620 5 HOH B1294 O 172.8 89.0 83.7 83.8 REMARK 620 6 HOH B1295 O 94.1 171.6 78.9 90.7 87.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXN B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JP3 RELATED DB: PDB REMARK 900 APO-ENZYME STRUCTURE DETERMINED BY SAD METHOD USING SE-MET DBREF 1UEH A 1 253 UNP P60472 UPPS_ECOLI 1 253 DBREF 1UEH B 1 253 UNP P60472 UPPS_ECOLI 1 253 SEQRES 1 A 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 A 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP SEQRES 3 A 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 A 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 A 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 A 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 A 253 ALA GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP SEQRES 8 A 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 A 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 A 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 A 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 A 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 A 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 A 253 ASP GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS SEQRES 15 A 253 MET HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 A 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 A 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 A 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 A 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 A 253 PRO GLY ASP GLU THR ALA SEQRES 1 B 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 B 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP SEQRES 3 B 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 B 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 B 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 B 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 B 253 ALA GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP SEQRES 8 B 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 B 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 B 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 B 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 B 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 B 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 B 253 ASP GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS SEQRES 15 B 253 MET HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 B 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 B 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 B 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 B 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 B 253 PRO GLY ASP GLU THR ALA HET SO4 A 901 5 HET SO4 A 902 5 HET MG A 701 1 HET MG A 702 1 HET SO4 B 903 5 HET SO4 B 904 5 HET SO4 B 905 5 HET OXN B 801 24 HET OXN B 802 30 HET UNL B 803 7 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM OXN OXTOXYNOL-10 HETNAM UNL UNKNOWN LIGAND HETSYN OXN ALPHA-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENYL]-OMEGA- HETSYN 2 OXN HYDROXYPOLY(OXY-1,2-ETHANEDIYL); TRITON X-100 FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 MG 2(MG 2+) FORMUL 10 OXN 2(C34 H62 O11) FORMUL 13 HOH *696(H2 O) HELIX 1 1 GLY A 27 GLN A 35 1 9 HELIX 2 2 ILE A 38 ASN A 60 1 23 HELIX 3 3 MET A 86 GLU A 96 1 11 HELIX 4 4 GLU A 96 HIS A 103 1 8 HELIX 5 5 ASN A 117 ALA A 132 1 16 HELIX 6 6 GLY A 146 GLN A 164 1 19 HELIX 7 7 GLN A 168 ILE A 172 5 5 HELIX 8 8 ASP A 173 GLN A 179 1 7 HELIX 9 9 LEU A 206 ALA A 210 5 5 HELIX 10 10 LEU A 220 PHE A 224 5 5 HELIX 11 11 ASP A 225 ASN A 238 1 14 HELIX 12 12 GLY B 27 GLN B 35 1 9 HELIX 13 13 ILE B 38 ASN B 60 1 23 HELIX 14 14 PRO B 78 HIS B 103 1 26 HELIX 15 15 ASP B 112 PHE B 116 5 5 HELIX 16 16 ASN B 117 ALA B 132 1 16 HELIX 17 17 GLY B 146 GLY B 165 1 20 HELIX 18 18 GLN B 168 ILE B 172 5 5 HELIX 19 19 ASP B 173 GLN B 179 1 7 HELIX 20 20 LEU B 206 ALA B 210 5 5 HELIX 21 21 LEU B 220 PHE B 224 5 5 HELIX 22 22 ASP B 225 ASN B 238 1 14 SHEET 1 A 6 ARG A 106 ILE A 110 0 SHEET 2 A 6 THR A 138 ALA A 143 1 O LEU A 139 N ARG A 106 SHEET 3 A 6 ALA A 64 PHE A 70 1 N LEU A 67 O ALA A 142 SHEET 4 A 6 HIS A 20 ILE A 24 1 N ILE A 23 O THR A 66 SHEET 5 A 6 LEU A 191 ARG A 194 1 O ILE A 193 N ALA A 22 SHEET 6 A 6 GLU A 213 PHE A 216 1 O TYR A 215 N VAL A 192 SHEET 1 B 6 ARG B 106 ILE B 110 0 SHEET 2 B 6 THR B 138 ALA B 143 1 O LEU B 139 N ARG B 106 SHEET 3 B 6 ALA B 64 PHE B 70 1 N LEU B 67 O ALA B 142 SHEET 4 B 6 HIS B 20 MET B 25 1 N VAL B 21 O THR B 66 SHEET 5 B 6 LEU B 191 THR B 195 1 O ILE B 193 N ALA B 22 SHEET 6 B 6 GLU B 213 PHE B 216 1 O TYR B 215 N VAL B 192 LINK ND1 HIS A 199 MG MG A 701 1555 1555 2.19 LINK OE2 GLU A 213 MG MG A 702 1555 1555 2.21 LINK MG MG A 701 O HOH A1205 1555 1555 2.06 LINK MG MG A 701 O HOH A1206 1555 1555 1.97 LINK MG MG A 701 OE2 GLU B 213 1555 1555 2.17 LINK MG MG A 701 O HOH B1292 1555 1555 2.25 LINK MG MG A 701 O HOH B1293 1555 1555 2.01 LINK MG MG A 702 O HOH A1207 1555 1555 2.28 LINK MG MG A 702 O HOH A1208 1555 1555 2.06 LINK MG MG A 702 ND1 HIS B 199 1555 1555 2.19 LINK MG MG A 702 O HOH B1294 1555 1555 1.98 LINK MG MG A 702 O HOH B1295 1555 1555 2.07 SITE 1 AC1 6 GLY A 27 ASN A 28 GLY A 29 ARG A 30 SITE 2 AC1 6 ARG A 39 HOH A1170 SITE 1 AC2 4 ARG A 194 ARG A 200 SER A 202 ARG B 241 SITE 1 AC3 5 GLY B 27 ASN B 28 GLY B 29 ARG B 30 SITE 2 AC3 5 HOH B1037 SITE 1 AC4 4 ARG B 194 ARG B 200 SER B 202 HOH B1038 SITE 1 AC5 5 LYS B 33 ARG B 102 HOH B 973 HOH B1163 SITE 2 AC5 5 HOH B1261 SITE 1 AC6 6 HIS A 199 HOH A1205 HOH A1206 GLU B 213 SITE 2 AC6 6 HOH B1292 HOH B1293 SITE 1 AC7 6 GLU A 213 HOH A1207 HOH A1208 HIS B 199 SITE 2 AC7 6 HOH B1294 HOH B1295 SITE 1 AC8 6 VAL B 54 SER B 55 ASN B 59 GLU B 96 SITE 2 AC8 6 HIS B 103 OXN B 802 SITE 1 AC9 10 MET B 25 ASN B 28 HIS B 43 GLY B 46 SITE 2 AC9 10 ALA B 47 ALA B 69 ILE B 109 ALA B 143 SITE 3 AC9 10 TRP B 221 OXN B 801 SITE 1 BC1 6 ILE B 38 ARG B 39 SER B 99 ARG B 102 SITE 2 BC1 6 HIS B 103 HOH B 948 CRYST1 63.962 67.422 111.756 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015634 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008948 0.00000