HEADER ANTIBIOTIC 20-MAY-03 1UEO TITLE SOLUTION STRUCTURE OF THE [T8A]-PENAEIDIN-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENAEIDIN-3A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENAEIDIN-3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 3 ORGANISM_COMMON: PACIFIC WHITE SHRIMP; SOURCE 4 ORGANISM_TAXID: 6689; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TGY 48-1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTG4812 KEYWDS HELIX, COIL-HELIX-COIL, PROLINE-RICH, CYSTEINE-RICH, DISULFIDE BOND, KEYWDS 2 ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,J.PONCET,J.GARNIER,C.ZATYLNY,E.BACHERE,A.AUMELAS REVDAT 4 27-DEC-23 1UEO 1 REMARK REVDAT 3 10-NOV-21 1UEO 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UEO 1 VERSN REVDAT 1 21-OCT-03 1UEO 0 JRNL AUTH Y.YANG,J.PONCET,J.GARNIER,C.ZATYLNY,E.BACHERE,A.AUMELAS JRNL TITL SOLUTION STRUCTURE OF THE RECOMBINANT PENAEIDIN-3, A SHRIMP JRNL TITL 2 ANTIMICROBIAL PEPTIDE JRNL REF J.BIOL.CHEM. V. 278 36859 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12842879 JRNL DOI 10.1074/JBC.M305450200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.0, X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 552 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS AND 28 DIHEDRAL ANGLE RESTRAINTS. THE REMARK 3 ARRANGEMENT OF THE THREE DISULFIDE BONDS WAS DETERMINED IN THIS REMARK 3 STUDY. REMARK 4 REMARK 4 1UEO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005739. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 3.9; 3.9 REMARK 210 IONIC STRENGTH : ND; ND REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM; 0.7MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, TOCSY, NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: A 0.3ML SOLUTION OF PENAEIDIN-3 WAS USED IN A SHIGEMI REMARK 210 TUBE. THE 500 MHZ SPECTROMETER WAS EQUIPPED WITH A CRYOPROBE. REMARK 210 THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR REMARK 210 TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 8 -58.65 70.16 REMARK 500 1 CYS A 32 78.60 -176.21 REMARK 500 1 LEU A 51 18.29 -144.49 REMARK 500 2 ILE A 11 75.92 54.74 REMARK 500 2 ASN A 30 41.36 -151.09 REMARK 500 2 CYS A 32 89.08 -175.03 REMARK 500 3 ILE A 11 131.22 65.84 REMARK 500 3 TYR A 29 49.30 -93.36 REMARK 500 3 CYS A 32 112.49 -173.25 REMARK 500 4 VAL A 2 161.49 63.79 REMARK 500 4 PRO A 28 -159.70 -76.28 REMARK 500 4 TYR A 29 79.36 -69.36 REMARK 500 4 ASN A 30 42.94 -159.49 REMARK 500 4 CYS A 32 95.43 -174.31 REMARK 500 5 ALA A 8 -90.23 56.34 REMARK 500 5 ASN A 30 46.75 -147.43 REMARK 500 5 CYS A 32 81.01 178.91 REMARK 500 6 TYR A 3 174.79 60.02 REMARK 500 6 PRO A 12 -164.96 -78.32 REMARK 500 6 VAL A 18 165.51 60.37 REMARK 500 6 CYS A 32 78.67 -172.40 REMARK 500 6 LEU A 51 12.67 -142.82 REMARK 500 6 LYS A 59 103.21 62.58 REMARK 500 7 VAL A 2 73.11 52.68 REMARK 500 7 TYR A 3 144.00 68.23 REMARK 500 7 LYS A 4 81.18 56.77 REMARK 500 7 ILE A 11 75.94 57.04 REMARK 500 7 PRO A 28 -169.74 -74.04 REMARK 500 7 CYS A 32 81.74 -175.01 REMARK 500 8 ALA A 8 79.65 -159.10 REMARK 500 8 ILE A 11 99.61 60.04 REMARK 500 8 PRO A 12 -160.88 -72.79 REMARK 500 8 ASN A 30 43.44 -144.98 REMARK 500 8 CYS A 32 91.01 -168.87 REMARK 500 9 VAL A 2 144.91 65.80 REMARK 500 9 TYR A 3 174.30 62.49 REMARK 500 9 CYS A 32 87.86 -173.08 REMARK 500 9 LEU A 51 16.97 -144.07 REMARK 500 10 ARG A 13 91.90 59.10 REMARK 500 10 PHE A 17 151.04 63.22 REMARK 500 10 CYS A 32 96.70 -172.79 REMARK 500 10 SER A 62 178.57 59.11 REMARK 500 11 ASN A 30 43.72 -161.96 REMARK 500 11 CYS A 32 112.51 -172.76 REMARK 500 12 TYR A 7 104.23 63.06 REMARK 500 12 ARG A 13 72.74 -163.90 REMARK 500 12 ASN A 30 41.51 -155.44 REMARK 500 12 CYS A 32 106.07 -172.64 REMARK 500 13 TYR A 3 79.76 -108.95 REMARK 500 13 ALA A 8 -134.12 50.54 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 9 0.31 SIDE CHAIN REMARK 500 1 ARG A 13 0.31 SIDE CHAIN REMARK 500 1 ARG A 19 0.32 SIDE CHAIN REMARK 500 1 ARG A 37 0.32 SIDE CHAIN REMARK 500 1 ARG A 45 0.27 SIDE CHAIN REMARK 500 1 ARG A 50 0.32 SIDE CHAIN REMARK 500 1 ARG A 53 0.32 SIDE CHAIN REMARK 500 2 ARG A 9 0.31 SIDE CHAIN REMARK 500 2 ARG A 13 0.31 SIDE CHAIN REMARK 500 2 ARG A 19 0.32 SIDE CHAIN REMARK 500 2 ARG A 37 0.32 SIDE CHAIN REMARK 500 2 ARG A 45 0.30 SIDE CHAIN REMARK 500 2 ARG A 50 0.31 SIDE CHAIN REMARK 500 2 ARG A 53 0.31 SIDE CHAIN REMARK 500 3 ARG A 9 0.31 SIDE CHAIN REMARK 500 3 ARG A 13 0.31 SIDE CHAIN REMARK 500 3 ARG A 19 0.32 SIDE CHAIN REMARK 500 3 ARG A 37 0.31 SIDE CHAIN REMARK 500 3 ARG A 45 0.32 SIDE CHAIN REMARK 500 3 ARG A 50 0.30 SIDE CHAIN REMARK 500 3 ARG A 53 0.26 SIDE CHAIN REMARK 500 4 ARG A 9 0.32 SIDE CHAIN REMARK 500 4 ARG A 13 0.32 SIDE CHAIN REMARK 500 4 ARG A 19 0.32 SIDE CHAIN REMARK 500 4 ARG A 37 0.31 SIDE CHAIN REMARK 500 4 ARG A 45 0.31 SIDE CHAIN REMARK 500 4 ARG A 50 0.31 SIDE CHAIN REMARK 500 4 ARG A 53 0.25 SIDE CHAIN REMARK 500 5 ARG A 9 0.32 SIDE CHAIN REMARK 500 5 ARG A 13 0.31 SIDE CHAIN REMARK 500 5 ARG A 19 0.29 SIDE CHAIN REMARK 500 5 ARG A 37 0.32 SIDE CHAIN REMARK 500 5 ARG A 45 0.31 SIDE CHAIN REMARK 500 5 ARG A 50 0.31 SIDE CHAIN REMARK 500 5 ARG A 53 0.31 SIDE CHAIN REMARK 500 6 ARG A 9 0.30 SIDE CHAIN REMARK 500 6 ARG A 13 0.32 SIDE CHAIN REMARK 500 6 ARG A 19 0.31 SIDE CHAIN REMARK 500 6 ARG A 37 0.32 SIDE CHAIN REMARK 500 6 ARG A 45 0.32 SIDE CHAIN REMARK 500 6 ARG A 50 0.31 SIDE CHAIN REMARK 500 6 ARG A 53 0.26 SIDE CHAIN REMARK 500 7 ARG A 9 0.30 SIDE CHAIN REMARK 500 7 ARG A 13 0.32 SIDE CHAIN REMARK 500 7 ARG A 19 0.29 SIDE CHAIN REMARK 500 7 ARG A 37 0.31 SIDE CHAIN REMARK 500 7 ARG A 45 0.29 SIDE CHAIN REMARK 500 7 ARG A 50 0.31 SIDE CHAIN REMARK 500 7 ARG A 53 0.32 SIDE CHAIN REMARK 500 8 ARG A 9 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 140 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1UEO A 1 63 UNP P81058 PEN3A_PENVA 20 82 SEQADV 1UEO ALA A 8 UNP P81058 THR 27 ENGINEERED MUTATION SEQRES 1 A 63 GLN VAL TYR LYS GLY GLY TYR ALA ARG PRO ILE PRO ARG SEQRES 2 A 63 PRO PRO PRO PHE VAL ARG PRO LEU PRO GLY GLY PRO ILE SEQRES 3 A 63 GLY PRO TYR ASN GLY CYS PRO VAL SER CYS ARG GLY ILE SEQRES 4 A 63 SER PHE SER GLN ALA ARG SER CYS CYS SER ARG LEU GLY SEQRES 5 A 63 ARG CYS CYS HIS VAL GLY LYS GLY TYR SER GLY HELIX 1 1 SER A 40 GLY A 52 1 13 SSBOND 1 CYS A 32 CYS A 47 1555 1555 2.02 SSBOND 2 CYS A 36 CYS A 54 1555 1555 2.02 SSBOND 3 CYS A 48 CYS A 55 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1