HEADER STRUCTURAL PROTEIN 29-MAY-03 1UFG TITLE SOLUTION STRUCTURE OF IMMUNOGLOBULIN LIKE DOMAIN OF MOUSE NUCLEAR TITLE 2 LAMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL IMMUNOGLOBULIN LIKE DOMAIN; COMPND 5 SYNONYM: NUCLEAR LAMIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1200006N04; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P011206-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS IMMUNOGLOBULIN LIKE FOLD, NUCLEAR LAMIN, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KOBAYASHI,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UFG 1 REMARK REVDAT 3 02-MAR-22 1UFG 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UFG 1 VERSN REVDAT 1 22-JUN-04 1UFG 0 JRNL AUTH N.KOBAYASHI,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF IMMUNOGLOBULIN LIKE DOMAIN OF MOUSE JRNL TITL 2 NUCLEAR LAMIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UFG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005767. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.88MM LAMIN U-15N, 13C, 20MM REMARK 210 PHOSPHATE BUFFER NA, 100MM NACL, REMARK 210 1MM D10-DTT, 0.02% NAN3, 10% D2O; REMARK 210 0.70MM LAMIN U-15N, 13C, 20MM REMARK 210 PHOSPHATE BUFFER NA, 100MM NACL, REMARK 210 1MM D10-DTT, 0.02% NAN3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C_SEPARATED_NOESY; REMARK 210 3D_15N_SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2002045, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.816, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 97 HE1 TRP A 120 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 147.94 67.15 REMARK 500 1 SER A 6 148.97 -174.88 REMARK 500 1 SER A 9 113.20 -178.97 REMARK 500 1 LYS A 17 163.49 64.85 REMARK 500 1 ARG A 19 91.52 62.81 REMARK 500 1 LYS A 20 178.00 66.17 REMARK 500 1 LEU A 21 108.99 -165.90 REMARK 500 1 GLU A 22 -69.67 -137.25 REMARK 500 1 SER A 23 100.86 61.49 REMARK 500 1 GLU A 25 137.37 61.88 REMARK 500 1 SER A 26 -56.95 -169.20 REMARK 500 1 PHE A 30 149.65 58.83 REMARK 500 1 SER A 31 70.99 -68.23 REMARK 500 1 GLN A 32 152.22 -44.74 REMARK 500 1 HIS A 33 79.23 -160.55 REMARK 500 1 SER A 37 82.16 -156.25 REMARK 500 1 ASN A 66 -23.89 154.62 REMARK 500 1 TRP A 67 163.96 -43.88 REMARK 500 1 LYS A 90 168.43 -47.34 REMARK 500 1 ALA A 102 25.79 -156.81 REMARK 500 1 ALA A 104 -168.00 -101.35 REMARK 500 1 HIS A 106 107.92 -48.74 REMARK 500 1 THR A 110 -81.81 -55.68 REMARK 500 1 THR A 119 143.85 -174.90 REMARK 500 1 ASN A 132 -174.15 -66.08 REMARK 500 2 SER A 5 147.88 -177.32 REMARK 500 2 ARG A 19 87.98 -178.85 REMARK 500 2 SER A 26 107.57 57.22 REMARK 500 2 ARG A 27 121.49 64.92 REMARK 500 2 SER A 29 94.70 47.42 REMARK 500 2 PHE A 30 153.05 58.14 REMARK 500 2 SER A 31 68.32 -69.50 REMARK 500 2 ARG A 35 115.92 -164.12 REMARK 500 2 SER A 37 81.91 -156.14 REMARK 500 2 VAL A 42 86.84 -58.72 REMARK 500 2 MET A 64 42.79 -109.09 REMARK 500 2 ASN A 66 -22.32 153.11 REMARK 500 2 TRP A 67 167.03 -45.08 REMARK 500 2 THR A 110 -88.41 -58.81 REMARK 500 2 THR A 119 160.03 179.66 REMARK 500 2 CYS A 122 -153.22 -106.16 REMARK 500 3 GLN A 10 148.08 60.67 REMARK 500 3 LYS A 18 114.63 64.90 REMARK 500 3 LEU A 21 -65.87 -142.21 REMARK 500 3 SER A 23 146.62 -172.18 REMARK 500 3 SER A 24 169.83 59.29 REMARK 500 3 GLU A 25 103.79 65.99 REMARK 500 3 SER A 26 101.65 -161.70 REMARK 500 3 PHE A 30 153.31 -40.64 REMARK 500 3 SER A 31 69.08 -67.59 REMARK 500 REMARK 500 THIS ENTRY HAS 459 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001003188.1 RELATED DB: TARGETDB DBREF 1UFG A 8 145 UNP P48678 LMNA_MOUSE 408 545 SEQADV 1UFG GLY A 1 UNP P48678 CLONING ARTIFACT SEQADV 1UFG SER A 2 UNP P48678 CLONING ARTIFACT SEQADV 1UFG SER A 3 UNP P48678 CLONING ARTIFACT SEQADV 1UFG GLY A 4 UNP P48678 CLONING ARTIFACT SEQADV 1UFG SER A 5 UNP P48678 CLONING ARTIFACT SEQADV 1UFG SER A 6 UNP P48678 CLONING ARTIFACT SEQADV 1UFG GLY A 7 UNP P48678 CLONING ARTIFACT SEQADV 1UFG SER A 146 UNP P48678 CLONING ARTIFACT SEQADV 1UFG GLY A 147 UNP P48678 CLONING ARTIFACT SEQADV 1UFG PRO A 148 UNP P48678 CLONING ARTIFACT SEQADV 1UFG SER A 149 UNP P48678 CLONING ARTIFACT SEQADV 1UFG SER A 150 UNP P48678 CLONING ARTIFACT SEQADV 1UFG GLY A 151 UNP P48678 CLONING ARTIFACT SEQRES 1 A 151 GLY SER SER GLY SER SER GLY GLN SER GLN GLY GLY GLY SEQRES 2 A 151 SER VAL THR LYS LYS ARG LYS LEU GLU SER SER GLU SER SEQRES 3 A 151 ARG SER SER PHE SER GLN HIS ALA ARG THR SER GLY ARG SEQRES 4 A 151 VAL ALA VAL GLU GLU VAL ASP GLU GLU GLY LYS PHE VAL SEQRES 5 A 151 ARG LEU ARG ASN LYS SER ASN GLU ASP GLN SER MET GLY SEQRES 6 A 151 ASN TRP GLN ILE ARG ARG GLN ASN GLY ASP ASP PRO LEU SEQRES 7 A 151 MET THR TYR ARG PHE PRO PRO LYS PHE THR LEU LYS ALA SEQRES 8 A 151 GLY GLN VAL VAL THR ILE TRP ALA SER GLY ALA GLY ALA SEQRES 9 A 151 THR HIS SER PRO PRO THR ASP LEU VAL TRP LYS ALA GLN SEQRES 10 A 151 ASN THR TRP GLY CYS GLY SER SER LEU ARG THR ALA LEU SEQRES 11 A 151 ILE ASN SER THR GLY GLU GLU VAL ALA MET ARG LYS LEU SEQRES 12 A 151 VAL ARG SER GLY PRO SER SER GLY SHEET 1 A 5 HIS A 33 THR A 36 0 SHEET 2 A 5 GLU A 137 VAL A 144 -1 O MET A 140 N ARG A 35 SHEET 3 A 5 SER A 125 ILE A 131 -1 N LEU A 126 O LEU A 143 SHEET 4 A 5 GLN A 68 ASN A 73 -1 N GLN A 72 O ARG A 127 SHEET 5 A 5 MET A 79 ARG A 82 -1 O MET A 79 N ARG A 71 SHEET 1 B 4 VAL A 40 VAL A 45 0 SHEET 2 B 4 PHE A 51 ASN A 56 -1 O ARG A 55 N ALA A 41 SHEET 3 B 4 VAL A 94 ALA A 99 -1 O VAL A 95 N LEU A 54 SHEET 4 B 4 ASP A 111 TRP A 114 1 N TRP A 114 O TRP A 98 SHEET 1 C 2 GLN A 62 SER A 63 0 SHEET 2 C 2 THR A 88 LEU A 89 -1 O LEU A 89 N GLN A 62 CISPEP 1 PRO A 108 PRO A 109 1 -0.02 CISPEP 2 PRO A 108 PRO A 109 2 0.05 CISPEP 3 PRO A 108 PRO A 109 3 0.03 CISPEP 4 PRO A 108 PRO A 109 4 0.00 CISPEP 5 PRO A 108 PRO A 109 5 0.01 CISPEP 6 PRO A 108 PRO A 109 6 0.01 CISPEP 7 PRO A 108 PRO A 109 7 0.00 CISPEP 8 PRO A 108 PRO A 109 8 0.00 CISPEP 9 PRO A 108 PRO A 109 9 0.04 CISPEP 10 PRO A 108 PRO A 109 10 0.05 CISPEP 11 PRO A 108 PRO A 109 11 -0.05 CISPEP 12 PRO A 108 PRO A 109 12 0.03 CISPEP 13 PRO A 108 PRO A 109 13 -0.09 CISPEP 14 PRO A 108 PRO A 109 14 0.00 CISPEP 15 PRO A 108 PRO A 109 15 -0.01 CISPEP 16 PRO A 108 PRO A 109 16 0.02 CISPEP 17 PRO A 108 PRO A 109 17 -0.04 CISPEP 18 PRO A 108 PRO A 109 18 -0.04 CISPEP 19 PRO A 108 PRO A 109 19 0.04 CISPEP 20 PRO A 108 PRO A 109 20 -0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1