HEADER ISOMERASE 11-JUN-03 1UFY TITLE CRYSTAL ANALYSIS OF CHORISMATE MUTASE FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE MUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.4.99.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CHORISMATE MUTASE, SHIKIMATE PATHWAY, MUTANT, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.INAGAKI,M.MIYANO,T.H.TAHIROV,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 25-OCT-23 1UFY 1 REMARK REVDAT 3 13-JUL-11 1UFY 1 VERSN REVDAT 2 24-FEB-09 1UFY 1 VERSN REVDAT 1 01-JUL-03 1UFY 0 JRNL AUTH E.INAGAKI,S.KURAMITSU,S.YOKOYAMA,M.MIYANO,T.H.TAHIROV JRNL TITL THE CRYSTAL STRUCTURE OF CHORISMATE MUTASE FROM THERMUS JRNL TITL 2 THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.110 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.110 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.127 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4471 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 88990 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.092 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.092 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.109 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3575 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 71505 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 941 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1043.5 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 963.52 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 5 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 10275 REMARK 3 NUMBER OF RESTRAINTS : 12599 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 ANGLE DISTANCES (A) : 0.031 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.031 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.111 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.117 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.049 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.007 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.050 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.097 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 0.03. REMARK 3 IN FINAL 20 CYCLES OF REFINEMENT ALL REFRECTIONS WERE INCLUDED. REMARK 3 FREE R VALUE IS CALUCULATED BEFORE INCLUDING ALL REFRECTIONS IN REMARK 3 THE REFINEMENT. REMARK 4 REMARK 4 1UFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90841 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PROTOMER A OF PDB ENTRY 1ODE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, MES, PH 7.0, MICRO REMARK 280 BATCH, TEMPERATURE 291K, MICROBATCH REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 35.62600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 20.56868 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 50.78667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 35.62600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 20.56868 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 50.78667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 35.62600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 20.56868 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 50.78667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 35.62600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 20.56868 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.78667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 35.62600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 20.56868 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.78667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 35.62600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 20.56868 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.78667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.13736 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 101.57333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 41.13736 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 101.57333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 41.13736 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 101.57333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 41.13736 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 101.57333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 41.13736 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 101.57333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 41.13736 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 101.57333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A REMARK 300 TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC REMARK 300 UNIT BY THE OPERATIONS: REMARK 300 -Y+2, X-Y+1, Z AND REMARK 300 -X+Y+1, -X+1, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 106.87800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 61.70604 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 123.41208 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 471 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 525 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 528 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CD OE1 OE2 REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 GLU A 119 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 104 CZ ARG A 104 NH1 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR A 39 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLU A 77 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 102 NH1 - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 67 32.10 -81.69 REMARK 500 ARG A 109 -137.06 57.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ODE RELATED DB: PDB REMARK 900 THE SAME PROTEIN OF ANOTHER CRYSTAL FORM. REMARK 900 RELATED ID: TTK003000008.3 RELATED DB: TARGETDB DBREF 1UFY A 1 122 UNP Q84FH6 Q84FH6_THETH 1 122 SEQRES 1 A 122 MET VAL ARG GLY ILE ARG GLY ALA ILE THR VAL GLU GLU SEQRES 2 A 122 ASP THR PRO GLU ALA ILE HIS GLN ALA THR ARG GLU LEU SEQRES 3 A 122 LEU LEU LYS MET LEU GLU ALA ASN GLY ILE GLN SER TYR SEQRES 4 A 122 GLU GLU LEU ALA ALA VAL ILE PHE THR VAL THR GLU ASP SEQRES 5 A 122 LEU THR SER ALA PHE PRO ALA GLU ALA ALA ARG GLN ILE SEQRES 6 A 122 GLY MET HIS ARG VAL PRO LEU LEU SER ALA ARG GLU VAL SEQRES 7 A 122 PRO VAL PRO GLY SER LEU PRO ARG VAL ILE ARG VAL LEU SEQRES 8 A 122 ALA LEU TRP ASN THR ASP THR PRO GLN ASP ARG VAL ARG SEQRES 9 A 122 HIS VAL TYR LEU ARG GLU ALA VAL ARG LEU ARG PRO ASP SEQRES 10 A 122 LEU GLU SER ALA GLN HET CL A 401 1 HET MLI A 201 7 HET MES A 301 12 HET MES A 302 12 HET MES A 303 12 HET MES A 304 12 HETNAM CL CHLORIDE ION HETNAM MLI MALONATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 CL CL 1- FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 MES 4(C6 H13 N O4 S) FORMUL 8 HOH *132(H2 O) HELIX 1 1 THR A 15 ASN A 34 1 20 HELIX 2 2 SER A 38 GLU A 40 5 3 HELIX 3 3 PHE A 57 ILE A 65 1 9 HELIX 4 4 GLY A 66 VAL A 70 5 5 HELIX 5 5 PRO A 99 VAL A 103 5 5 HELIX 6 6 ARG A 109 GLU A 119 5 11 SHEET 1 A 5 LEU A 72 ARG A 76 0 SHEET 2 A 5 LEU A 42 VAL A 49 1 N PHE A 47 O LEU A 73 SHEET 3 A 5 VAL A 87 ASN A 95 -1 O LEU A 91 N ILE A 46 SHEET 4 A 5 VAL A 2 THR A 10 -1 N ILE A 9 O ILE A 88 SHEET 5 A 5 VAL A 106 LEU A 108 1 O LEU A 108 N ALA A 8 SITE 1 AC1 5 ARG A 69 VAL A 103 HIS A 105 HOH A 447 SITE 2 AC1 5 HOH A 450 SITE 1 AC2 8 ARG A 6 ARG A 63 ARG A 89 TYR A 107 SITE 2 AC2 8 LEU A 114 ARG A 115 HOH A 429 HOH A 436 SITE 1 AC3 5 GLN A 21 ARG A 24 LEU A 31 GLU A 32 SITE 2 AC3 5 ILE A 36 SITE 1 AC4 13 THR A 50 PRO A 79 VAL A 80 GLY A 82 SITE 2 AC4 13 SER A 83 LEU A 84 HOH A 425 HOH A 443 SITE 3 AC4 13 HOH A 456 HOH A 463 HOH A 473 HOH A 484 SITE 4 AC4 13 HOH A 500 SITE 1 AC5 8 HIS A 105 VAL A 106 TYR A 107 LEU A 118 SITE 2 AC5 8 GLU A 119 SER A 120 ALA A 121 HOH A 505 SITE 1 AC6 7 GLU A 17 HIS A 20 ARG A 24 GLU A 40 SITE 2 AC6 7 GLU A 41 GLN A 64 HOH A 432 CRYST1 71.252 71.252 152.360 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014035 0.008103 0.000000 0.00000 SCALE2 0.000000 0.016206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006563 0.00000