HEADER PROTEIN BINDING 16-JUN-03 1UGK TITLE SOLUTION STRUCTURE OF THE FIRST C2 DOMAIN OF SYNAPTOTAGMIN IV FROM TITLE 2 HUMAN FETAL BRAIN (KIAA1342) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOTAGMIN IV; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN; COMPND 5 SYNONYM: KIAA1342; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FJ00418; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P020924-36; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA SANDWICH, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE,T.YABUKI, AUTHOR 2 M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA,A.TANAKA,T.OSANAI, AUTHOR 3 Y.MATSUO,O.OHARA,T.NAGASE,R.KIKUNO,M.NAKAYAMA,S.YOKOYAMA,RIKEN AUTHOR 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UGK 1 REMARK REVDAT 3 02-MAR-22 1UGK 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UGK 1 VERSN REVDAT 1 16-DEC-03 1UGK 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE, JRNL AUTH 2 T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA, JRNL AUTH 3 A.TANAKA,T.OSANAI,Y.MATSUO,O.OHARA,T.NAGASE,R.KIKUNO, JRNL AUTH 4 M.NAKAYAMA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST C2 DOMAIN OF SYNAPTOTAGMIN JRNL TITL 2 IV FROM HUMAN FETAL BRAIN (KIAA1342) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UGK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005798. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM TRIS-D11; 100MM NACL; 1MM REMARK 210 DTT; 0.1MM NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.822, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 52 H LYS A 56 1.47 REMARK 500 OD1 ASP A 45 H LYS A 67 1.51 REMARK 500 O PRO A 83 H THR A 85 1.56 REMARK 500 O GLN A 86 H GLU A 89 1.58 REMARK 500 O TYR A 84 H ILE A 87 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 106.94 -163.03 REMARK 500 1 SER A 5 104.88 -178.60 REMARK 500 1 LEU A 8 76.96 45.72 REMARK 500 1 ASN A 18 68.87 -68.42 REMARK 500 1 LYS A 22 67.32 38.47 REMARK 500 1 LYS A 29 -139.62 -61.55 REMARK 500 1 GLU A 39 60.74 -107.76 REMARK 500 1 GLN A 40 -68.78 -122.17 REMARK 500 1 ASP A 45 73.67 -118.54 REMARK 500 1 GLU A 55 -61.56 -15.50 REMARK 500 1 LYS A 57 -80.85 -67.01 REMARK 500 1 HIS A 58 92.36 -51.26 REMARK 500 1 ARG A 63 147.02 -38.22 REMARK 500 1 LEU A 65 178.60 -56.31 REMARK 500 1 LYS A 67 97.23 48.56 REMARK 500 1 THR A 68 114.91 174.61 REMARK 500 1 ASP A 74 50.83 39.70 REMARK 500 1 TYR A 84 -56.15 67.34 REMARK 500 1 ALA A 91 129.02 -172.92 REMARK 500 1 ASP A 100 64.76 -165.29 REMARK 500 1 ARG A 101 -170.03 45.08 REMARK 500 1 PHE A 102 25.20 44.98 REMARK 500 1 SER A 103 83.53 40.15 REMARK 500 1 SER A 116 91.29 -64.23 REMARK 500 1 SER A 137 92.49 46.25 REMARK 500 2 SER A 3 -54.90 -156.07 REMARK 500 2 LEU A 8 -91.98 -117.85 REMARK 500 2 LYS A 22 70.27 35.38 REMARK 500 2 LYS A 29 -136.37 -61.12 REMARK 500 2 ALA A 36 157.61 -45.65 REMARK 500 2 GLU A 39 -58.21 -125.06 REMARK 500 2 MET A 42 78.08 -61.94 REMARK 500 2 ASP A 45 72.97 -118.23 REMARK 500 2 GLU A 55 -64.79 -25.62 REMARK 500 2 HIS A 58 94.40 -62.47 REMARK 500 2 LYS A 67 84.94 42.91 REMARK 500 2 THR A 68 119.77 -177.83 REMARK 500 2 ASP A 74 43.95 38.04 REMARK 500 2 TYR A 84 -57.80 67.23 REMARK 500 2 ALA A 91 124.78 -178.00 REMARK 500 2 ASP A 100 48.51 -92.37 REMARK 500 2 ARG A 101 42.18 33.77 REMARK 500 2 PHE A 102 26.19 -153.60 REMARK 500 2 SER A 103 -57.51 73.51 REMARK 500 2 ARG A 104 126.52 -36.98 REMARK 500 2 SER A 116 91.28 -68.10 REMARK 500 3 SER A 6 84.97 -155.72 REMARK 500 3 LYS A 22 69.07 37.18 REMARK 500 3 LYS A 29 -137.77 -62.21 REMARK 500 3 GLU A 39 -109.14 -93.59 REMARK 500 REMARK 500 THIS ENTRY HAS 429 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001316.1 RELATED DB: TARGETDB DBREF 1UGK A 8 132 UNP Q9H2B2 SYT4_HUMAN 154 278 SEQADV 1UGK GLY A 1 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK SER A 2 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK SER A 3 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK GLY A 4 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK SER A 5 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK SER A 6 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK GLY A 7 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK SER A 133 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK GLY A 134 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK PRO A 135 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK SER A 136 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK SER A 137 UNP Q9H2B2 CLONING ARTIFACT SEQADV 1UGK GLY A 138 UNP Q9H2B2 CLONING ARTIFACT SEQRES 1 A 138 GLY SER SER GLY SER SER GLY LEU GLY THR LEU PHE PHE SEQRES 2 A 138 SER LEU GLU TYR ASN PHE GLU ARG LYS ALA PHE VAL VAL SEQRES 3 A 138 ASN ILE LYS GLU ALA ARG GLY LEU PRO ALA MET ASP GLU SEQRES 4 A 138 GLN SER MET THR SER ASP PRO TYR ILE LYS MET THR ILE SEQRES 5 A 138 LEU PRO GLU LYS LYS HIS LYS VAL LYS THR ARG VAL LEU SEQRES 6 A 138 ARG LYS THR LEU ASP PRO ALA PHE ASP GLU THR PHE THR SEQRES 7 A 138 PHE TYR GLY ILE PRO TYR THR GLN ILE GLN GLU LEU ALA SEQRES 8 A 138 LEU HIS PHE THR ILE LEU SER PHE ASP ARG PHE SER ARG SEQRES 9 A 138 ASP ASP ILE ILE GLY GLU VAL LEU ILE PRO LEU SER GLY SEQRES 10 A 138 ILE GLU LEU SER GLU GLY LYS MET LEU MET ASN ARG GLU SEQRES 11 A 138 ILE ILE SER GLY PRO SER SER GLY HELIX 1 1 PHE A 19 ARG A 21 5 3 HELIX 2 2 GLN A 86 GLU A 89 5 4 SHEET 1 A 4 ALA A 72 TYR A 80 0 SHEET 2 A 4 ALA A 23 ARG A 32 -1 N PHE A 24 O PHE A 79 SHEET 3 A 4 THR A 10 ASN A 18 -1 N THR A 10 O ARG A 32 SHEET 4 A 4 MET A 125 GLU A 130 -1 O MET A 127 N PHE A 13 SHEET 1 B 4 LYS A 59 LYS A 61 0 SHEET 2 B 4 ASP A 45 LEU A 53 -1 N MET A 50 O VAL A 60 SHEET 3 B 4 ALA A 91 PHE A 99 -1 O ALA A 91 N LEU A 53 SHEET 4 B 4 GLY A 109 PRO A 114 -1 O ILE A 113 N LEU A 92 CISPEP 1 LEU A 53 PRO A 54 1 0.00 CISPEP 2 LEU A 53 PRO A 54 2 0.01 CISPEP 3 LEU A 53 PRO A 54 3 -0.01 CISPEP 4 LEU A 53 PRO A 54 4 0.05 CISPEP 5 LEU A 53 PRO A 54 5 0.01 CISPEP 6 LEU A 53 PRO A 54 6 0.00 CISPEP 7 LEU A 53 PRO A 54 7 0.01 CISPEP 8 LEU A 53 PRO A 54 8 -0.06 CISPEP 9 LEU A 53 PRO A 54 9 -0.08 CISPEP 10 LEU A 53 PRO A 54 10 0.06 CISPEP 11 LEU A 53 PRO A 54 11 0.03 CISPEP 12 LEU A 53 PRO A 54 12 0.04 CISPEP 13 LEU A 53 PRO A 54 13 -0.05 CISPEP 14 LEU A 53 PRO A 54 14 0.03 CISPEP 15 LEU A 53 PRO A 54 15 -0.06 CISPEP 16 LEU A 53 PRO A 54 16 0.03 CISPEP 17 LEU A 53 PRO A 54 17 0.04 CISPEP 18 LEU A 53 PRO A 54 18 -0.04 CISPEP 19 LEU A 53 PRO A 54 19 -0.07 CISPEP 20 LEU A 53 PRO A 54 20 -0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1