HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JUN-03 1UH6 TITLE SOLUTION STRUCTURE OF THE MURINE UBIQUITIN-LIKE 5 PROTEIN FROM RIKEN TITLE 2 CDNA 0610031K06 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE 5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 0610031K06; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: 011010-5; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-GRASP FOLD, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE,T.YABUKI,M.AOKI, AUTHOR 2 E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA,A.TANAKA,T.OSANAI,T.ARAKAWA, AUTHOR 3 P.CARNINCI,J.KAWAI,Y.HAYASHIZAKI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 4 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UH6 1 REMARK REVDAT 3 02-MAR-22 1UH6 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UH6 1 VERSN REVDAT 1 25-DEC-03 1UH6 0 JRNL AUTH F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE,T.YABUKI, JRNL AUTH 2 M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA,A.TANAKA, JRNL AUTH 3 T.OSANAI,T.ARAKAWA,P.CARNINCI,J.KAWAI,Y.HAYASHIZAKI, JRNL AUTH 4 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE MURINE UBIQUITIN-LIKE 5 PROTEIN JRNL TITL 2 FROM RIKEN CDNA 0610031K06 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UH6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005820. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 520MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM PHOSPHATE BUFFER; 500MM REMARK 210 NACL; 4MM DTT; 0.4MM NAN3; 8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.816, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 51 H LYS A 55 1.51 REMARK 500 O ILE A 58 H THR A 62 1.55 REMARK 500 H VAL A 70 O TYR A 98 1.59 REMARK 500 O ARG A 65 H LYS A 68 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 153.56 178.30 REMARK 500 1 SER A 5 160.03 65.93 REMARK 500 1 HIS A 6 -62.35 -140.77 REMARK 500 1 SER A 13 134.07 -174.30 REMARK 500 1 LEU A 17 99.55 65.61 REMARK 500 1 ARG A 20 116.76 61.00 REMARK 500 1 GLU A 23 -74.66 67.29 REMARK 500 1 ALA A 26 78.47 -153.48 REMARK 500 1 TRP A 74 -79.54 65.61 REMARK 500 1 TYR A 75 33.43 -149.24 REMARK 500 2 HIS A 7 147.45 62.78 REMARK 500 2 HIS A 8 91.80 57.13 REMARK 500 2 HIS A 9 118.98 65.87 REMARK 500 2 HIS A 10 97.83 -164.82 REMARK 500 2 SER A 12 89.53 50.66 REMARK 500 2 SER A 13 79.62 63.69 REMARK 500 2 ALA A 15 -66.35 -157.98 REMARK 500 2 SER A 16 121.78 66.96 REMARK 500 2 SER A 22 98.83 53.39 REMARK 500 2 ALA A 26 77.31 -157.64 REMARK 500 2 THR A 64 -172.16 -67.37 REMARK 500 2 TRP A 74 -85.12 64.84 REMARK 500 2 ASP A 91 83.90 -65.87 REMARK 500 3 ALA A 15 108.61 -45.87 REMARK 500 3 ARG A 20 171.15 62.41 REMARK 500 3 THR A 64 -151.71 -59.20 REMARK 500 3 TRP A 74 -78.26 65.99 REMARK 500 3 TYR A 75 35.30 -151.67 REMARK 500 3 LYS A 79 178.51 -53.82 REMARK 500 3 HIS A 81 44.10 -95.37 REMARK 500 4 HIS A 6 76.09 41.75 REMARK 500 4 HIS A 7 131.44 -175.38 REMARK 500 4 SER A 12 80.16 -176.58 REMARK 500 4 LEU A 17 136.96 79.88 REMARK 500 4 THR A 64 -142.27 -65.54 REMARK 500 4 TRP A 74 -85.50 64.10 REMARK 500 4 GLU A 88 28.41 49.99 REMARK 500 4 ILE A 89 158.75 -40.54 REMARK 500 4 MET A 93 160.28 -40.36 REMARK 500 5 SER A 12 -69.68 69.46 REMARK 500 5 SER A 13 96.40 59.91 REMARK 500 5 SER A 16 -54.05 -136.04 REMARK 500 5 VAL A 18 -51.68 163.14 REMARK 500 5 ALA A 26 70.51 49.95 REMARK 500 5 ARG A 36 33.63 -98.89 REMARK 500 5 THR A 64 -153.57 -59.00 REMARK 500 5 TRP A 74 -72.98 68.25 REMARK 500 5 TYR A 75 -44.04 -133.85 REMARK 500 5 LYS A 79 -174.74 -61.47 REMARK 500 6 SER A 5 -59.13 74.75 REMARK 500 REMARK 500 THIS ENTRY HAS 227 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001005042.1 RELATED DB: TARGETDB DBREF 1UH6 A 28 100 UNP Q9EPV8 UBL5_MOUSE 1 73 SEQADV 1UH6 MET A 1 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 LYS A 2 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 GLY A 3 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 SER A 4 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 SER A 5 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 HIS A 6 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 HIS A 7 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 HIS A 8 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 HIS A 9 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 HIS A 10 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 HIS A 11 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 SER A 12 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 SER A 13 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 GLY A 14 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 ALA A 15 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 SER A 16 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 LEU A 17 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 VAL A 18 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 PRO A 19 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 ARG A 20 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 GLY A 21 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 SER A 22 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 GLU A 23 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 GLY A 24 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 ALA A 25 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 ALA A 26 UNP Q9EPV8 CLONING ARTIFACT SEQADV 1UH6 THR A 27 UNP Q9EPV8 CLONING ARTIFACT SEQRES 1 A 100 MET LYS GLY SER SER HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 100 GLY ALA SER LEU VAL PRO ARG GLY SER GLU GLY ALA ALA SEQRES 3 A 100 THR MET ILE GLU VAL VAL CYS ASN ASP ARG LEU GLY LYS SEQRES 4 A 100 LYS VAL ARG VAL LYS CYS ASN THR ASP ASP THR ILE GLY SEQRES 5 A 100 ASP LEU LYS LYS LEU ILE ALA ALA GLN THR GLY THR ARG SEQRES 6 A 100 TRP ASN LYS ILE VAL LEU LYS LYS TRP TYR THR ILE PHE SEQRES 7 A 100 LYS ASP HIS VAL SER LEU GLY ASP TYR GLU ILE HIS ASP SEQRES 8 A 100 GLY MET ASN LEU GLU LEU TYR TYR GLN HELIX 1 1 THR A 50 GLY A 63 1 14 HELIX 2 2 ARG A 65 ILE A 69 5 5 HELIX 3 3 SER A 83 GLU A 88 1 6 SHEET 1 A 5 VAL A 41 ASN A 46 0 SHEET 2 A 5 MET A 28 ASN A 34 -1 N CYS A 33 O VAL A 41 SHEET 3 A 5 MET A 93 TYR A 98 1 O LEU A 95 N ASN A 34 SHEET 4 A 5 VAL A 70 LYS A 73 -1 N VAL A 70 O TYR A 98 SHEET 5 A 5 THR A 76 ILE A 77 -1 O THR A 76 N LYS A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1