HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-JUL-03 1UHU TITLE SOLUTION STRUCTURE OF THE RETROVIRAL GAG MA-LIKE DOMAIN OF RIKEN CDNA TITLE 2 3110009E22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRODUCT OF RIKEN CDNA 3110009E22; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAG MA-LIKE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: IN VITRO TRANSLATION KEYWDS STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,H.HATANAKA,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 Y.HAYASHIZAKI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UHU 1 REMARK REVDAT 3 02-MAR-22 1UHU 1 AUTHOR JRNL REMARK REVDAT 2 24-FEB-09 1UHU 1 VERSN REVDAT 1 27-JUL-04 1UHU 0 JRNL AUTH S.SUZUKI,H.HATANAKA,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 Y.HAYASHIZAKI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RETROVIRAL GAG MA-LIKE DOMAIN OF JRNL TITL 2 RIKEN CDNA 3110009E22 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UHU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000005844. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.2MM 13C/15N-GAG MA, 20MM REMARK 210 PHOSPHATE BUFFER NA, 100MM NACL, REMARK 210 1MM D-DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.771, OLIVIA 1.9.5, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 65 H PHE A 69 1.50 REMARK 500 O LEU A 58 H PHE A 62 1.53 REMARK 500 O ALA A 23 H VAL A 28 1.53 REMARK 500 O GLN A 79 H ILE A 83 1.53 REMARK 500 O GLN A 80 HG1 THR A 84 1.55 REMARK 500 O PRO A 34 H PHE A 38 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 113.77 -165.98 REMARK 500 1 SER A 5 148.20 -171.10 REMARK 500 1 SER A 27 44.15 72.90 REMARK 500 1 ALA A 40 -60.62 -97.47 REMARK 500 1 SER A 41 36.23 -152.27 REMARK 500 1 ASP A 47 84.53 78.27 REMARK 500 1 VAL A 48 -45.05 -159.94 REMARK 500 1 PHE A 56 38.73 -99.25 REMARK 500 1 PHE A 69 41.61 -90.31 REMARK 500 1 ILE A 97 -61.40 -100.67 REMARK 500 1 SER A 102 82.48 63.46 REMARK 500 2 SER A 1 101.60 60.71 REMARK 500 2 SER A 2 114.63 63.53 REMARK 500 2 SER A 4 -60.19 -125.16 REMARK 500 2 SER A 27 50.98 78.00 REMARK 500 2 SER A 41 40.26 -151.49 REMARK 500 2 ASP A 47 89.16 74.63 REMARK 500 2 VAL A 48 -44.27 -160.84 REMARK 500 2 PHE A 69 42.79 -91.54 REMARK 500 2 SER A 75 151.84 -44.65 REMARK 500 2 ILE A 97 -60.18 -102.31 REMARK 500 2 SER A 103 111.56 62.96 REMARK 500 3 SER A 2 79.39 45.71 REMARK 500 3 SER A 4 78.52 58.75 REMARK 500 3 SER A 41 38.48 -159.01 REMARK 500 3 ASP A 47 82.23 47.62 REMARK 500 3 VAL A 48 -59.44 -151.68 REMARK 500 3 PHE A 56 43.03 -97.33 REMARK 500 3 PHE A 69 48.02 -96.04 REMARK 500 3 SER A 75 150.40 -44.63 REMARK 500 3 ASN A 92 63.83 -112.47 REMARK 500 3 SER A 93 116.96 -38.46 REMARK 500 4 SER A 1 -58.97 -147.59 REMARK 500 4 SER A 4 -59.13 -142.15 REMARK 500 4 ALA A 40 -68.69 -95.20 REMARK 500 4 SER A 41 37.03 -143.75 REMARK 500 4 ASP A 47 84.99 55.54 REMARK 500 4 VAL A 48 -52.12 -157.76 REMARK 500 4 PHE A 69 41.82 -87.85 REMARK 500 4 SER A 93 109.81 -57.46 REMARK 500 4 ILE A 97 -60.73 -104.99 REMARK 500 4 SER A 102 -75.34 -102.75 REMARK 500 5 SER A 5 -62.92 -167.24 REMARK 500 5 SER A 41 36.17 -154.09 REMARK 500 5 ASP A 47 82.41 61.84 REMARK 500 5 VAL A 48 -59.09 -159.76 REMARK 500 5 PHE A 56 30.53 -94.43 REMARK 500 5 PHE A 69 42.52 -89.78 REMARK 500 5 ILE A 97 -62.86 -103.71 REMARK 500 5 SER A 102 113.85 -177.17 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001004487.1 RELATED DB: TARGETDB DBREF 1UHU A 0 104 PDB 1UHU 1UHU 0 104 SEQRES 1 A 105 GLY SER SER GLY SER SER GLY THR PRO LEU SER LEU THR SEQRES 2 A 105 LEU ASP HIS TRP SER GLU ILE ARG SER ARG ALA HIS ASN SEQRES 3 A 105 LEU SER VAL GLU ILE LYS LYS GLY PRO TRP ARG THR PHE SEQRES 4 A 105 CYS ALA SER GLU TRP PRO THR PHE ASP VAL GLY TRP PRO SEQRES 5 A 105 PRO GLU GLY THR PHE ASP LEU THR VAL ILE PHE GLU VAL SEQRES 6 A 105 LYS ALA ILE VAL PHE GLN ASP GLY PRO GLY SER HIS PRO SEQRES 7 A 105 ASP GLN GLN PRO TYR ILE THR VAL TRP GLN ASP LEU VAL SEQRES 8 A 105 GLN ASN SER PRO PRO TRP ILE LYS SER GLY PRO SER SER SEQRES 9 A 105 GLY HELIX 1 1 THR A 7 HIS A 15 1 9 HELIX 2 2 HIS A 15 SER A 27 1 13 HELIX 3 3 LYS A 31 GLU A 42 1 12 HELIX 4 4 ASP A 57 PHE A 69 1 13 HELIX 5 5 GLN A 79 ASN A 92 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1