HEADER ANTIBIOTIC 15-JUL-03 1UI5 TITLE CRYSTAL STRUCTURE OF GAMMA-BUTYROLACTONE RECEPTOR (ARPA LIKE PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-FACTOR RECEPTOR HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CPRB, BACTERIAL AUTOREGULATOR RECEPTOR PROTEIN, GAMMA- COMPND 5 BUTYROLACTONE RECEPTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELIX-TURN-HELIX, ALPHA-HELIX-BUNDLE, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR R.NATSUME,T.SENDA,S.HORINOUCHI REVDAT 4 27-DEC-23 1UI5 1 SEQADV LINK REVDAT 3 13-JUL-11 1UI5 1 VERSN REVDAT 2 24-FEB-09 1UI5 1 VERSN REVDAT 1 27-JUL-04 1UI5 0 JRNL AUTH R.NATSUME,Y.OHNISHI,T.SENDA,S.HORINOUCHI JRNL TITL CRYSTAL STRUCTURE OF A GAMMA-BUTYROLACTONE AUTOREGULATOR JRNL TITL 2 RECEPTOR PROTEIN IN STREPTOMYCES COELICOLOR A3(2) JRNL REF J.MOL.BIOL. V. 336 409 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14757054 JRNL DOI 10.1016/J.JMB.2003.12.040 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 5.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.705 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.328 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.597 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3173 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3079 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4267 ; 1.339 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7041 ; 0.809 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 4.338 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;20.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3413 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 877 ; 0.382 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2803 ; 0.193 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.255 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.179 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.153 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.196 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 0.751 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3150 ; 1.448 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 2.634 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1117 ; 4.383 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1090 71.4530 -7.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: 0.0418 REMARK 3 T33: 0.0340 T12: -0.0146 REMARK 3 T13: -0.0181 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.2704 L22: 1.9707 REMARK 3 L33: 5.4386 L12: -0.5874 REMARK 3 L13: -1.0061 L23: -1.1137 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: 0.0763 S13: 0.1118 REMARK 3 S21: -0.0021 S22: 0.0637 S23: 0.0146 REMARK 3 S31: -0.1916 S32: 0.3207 S33: -0.0960 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6510 50.2580 14.9930 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.1008 REMARK 3 T33: 0.0691 T12: 0.0041 REMARK 3 T13: -0.0231 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.3716 L22: 1.5350 REMARK 3 L33: 0.9765 L12: -0.2027 REMARK 3 L13: 0.1023 L23: -0.3060 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.0342 S13: -0.0365 REMARK 3 S21: 0.0101 S22: -0.0344 S23: -0.1202 REMARK 3 S31: 0.0204 S32: 0.0219 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2260 86.1910 21.4560 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.0430 REMARK 3 T33: 0.0295 T12: -0.0082 REMARK 3 T13: 0.0099 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.8857 L22: 4.9052 REMARK 3 L33: 2.3512 L12: -0.2399 REMARK 3 L13: -1.2110 L23: 1.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: 0.0607 S13: 0.2565 REMARK 3 S21: -0.2939 S22: -0.0073 S23: -0.0244 REMARK 3 S31: -0.0063 S32: 0.1065 S33: -0.1309 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 75 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7060 57.2150 30.6520 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1151 REMARK 3 T33: 0.0694 T12: -0.0100 REMARK 3 T13: 0.0076 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.4152 L22: 2.6428 REMARK 3 L33: 1.1932 L12: -0.5085 REMARK 3 L13: 0.0999 L23: -0.4868 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0395 S13: 0.0068 REMARK 3 S21: -0.1717 S22: -0.0414 S23: -0.1212 REMARK 3 S31: -0.0259 S32: 0.1024 S33: 0.0229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000005855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792, 0.9795, 0.9710 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26420 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.20 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 2.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, LITHIUM SULFATE, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.07650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.71100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.03300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.71100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.07650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.03300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A DIMER THAT IS CONTAINED IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 119 REMARK 465 GLY A 168 REMARK 465 GLY A 169 REMARK 465 THR A 170 REMARK 465 LEU A 171 REMARK 465 GLU A 172 REMARK 465 PRO A 173 REMARK 465 ALA A 174 REMARK 465 GLY A 175 REMARK 465 GLY A 213 REMARK 465 THR A 214 REMARK 465 ALA A 215 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 GLN B 4 REMARK 465 ASP B 76 REMARK 465 GLY B 77 REMARK 465 ARG B 78 REMARK 465 GLY B 79 REMARK 465 PRO B 118 REMARK 465 PRO B 119 REMARK 465 THR B 214 REMARK 465 ALA B 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 84 O HOH A 253 1.91 REMARK 500 OE1 GLN A 9 O HOH A 252 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 137 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 23 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 143 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 149 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 151 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 212 -63.09 -95.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MSE B 184 -10.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UI6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN DIFFERENT CRYSTAL FORM DBREF 1UI5 A 1 215 UNP O66122 O66122_STRCO 1 215 DBREF 1UI5 B 1 215 UNP O66122 O66122_STRCO 1 215 SEQADV 1UI5 MSE A 87 UNP O66122 MET 87 MODIFIED RESIDUE SEQADV 1UI5 MSE A 93 UNP O66122 MET 93 MODIFIED RESIDUE SEQADV 1UI5 MSE A 184 UNP O66122 MET 184 MODIFIED RESIDUE SEQADV 1UI5 MSE A 192 UNP O66122 MET 192 MODIFIED RESIDUE SEQADV 1UI5 MSE B 87 UNP O66122 MET 87 MODIFIED RESIDUE SEQADV 1UI5 MSE B 93 UNP O66122 MET 93 MODIFIED RESIDUE SEQADV 1UI5 MSE B 184 UNP O66122 MET 184 MODIFIED RESIDUE SEQADV 1UI5 MSE B 192 UNP O66122 MET 192 MODIFIED RESIDUE SEQRES 1 A 215 MET ALA ARG GLN LEU ARG ALA GLU GLN THR ARG ALA THR SEQRES 2 A 215 ILE ILE GLY ALA ALA ALA ASP LEU PHE ASP ARG ARG GLY SEQRES 3 A 215 TYR GLU SER THR THR LEU SER GLU ILE VAL ALA HIS ALA SEQRES 4 A 215 GLY VAL THR LYS GLY ALA LEU TYR PHE HIS PHE ALA ALA SEQRES 5 A 215 LYS GLU ASP LEU ALA HIS ALA ILE LEU GLU ILE GLN SER SEQRES 6 A 215 ARG THR SER ARG ARG LEU ALA LYS ASP LEU ASP GLY ARG SEQRES 7 A 215 GLY TYR SER SER LEU GLU ALA LEU MSE ARG LEU THR PHE SEQRES 8 A 215 GLY MSE ALA ARG LEU CYS VAL GLN GLY PRO VAL LEU ARG SEQRES 9 A 215 ALA GLY LEU ARG LEU ALA THR ALA GLY VAL PRO VAL ARG SEQRES 10 A 215 PRO PRO LEU PRO HIS PRO PHE THR GLU TRP ARG GLU ILE SEQRES 11 A 215 ALA THR SER ARG LEU LEU ASP ALA VAL ARG GLN SER ASP SEQRES 12 A 215 VAL HIS GLN ASP ILE ASP VAL ASP SER VAL ALA HIS THR SEQRES 13 A 215 LEU VAL CYS SER VAL VAL GLY THR ARG VAL VAL GLY GLY SEQRES 14 A 215 THR LEU GLU PRO ALA GLY ARG GLU PRO ARG ARG LEU ALA SEQRES 15 A 215 GLU MSE TRP TYR ILE LEU ILE ARG GLY MSE VAL PRO VAL SEQRES 16 A 215 THR ARG ARG ALA ARG TYR VAL THR LEU ALA ALA ARG LEU SEQRES 17 A 215 GLU GLN GLU THR GLY THR ALA SEQRES 1 B 215 MET ALA ARG GLN LEU ARG ALA GLU GLN THR ARG ALA THR SEQRES 2 B 215 ILE ILE GLY ALA ALA ALA ASP LEU PHE ASP ARG ARG GLY SEQRES 3 B 215 TYR GLU SER THR THR LEU SER GLU ILE VAL ALA HIS ALA SEQRES 4 B 215 GLY VAL THR LYS GLY ALA LEU TYR PHE HIS PHE ALA ALA SEQRES 5 B 215 LYS GLU ASP LEU ALA HIS ALA ILE LEU GLU ILE GLN SER SEQRES 6 B 215 ARG THR SER ARG ARG LEU ALA LYS ASP LEU ASP GLY ARG SEQRES 7 B 215 GLY TYR SER SER LEU GLU ALA LEU MSE ARG LEU THR PHE SEQRES 8 B 215 GLY MSE ALA ARG LEU CYS VAL GLN GLY PRO VAL LEU ARG SEQRES 9 B 215 ALA GLY LEU ARG LEU ALA THR ALA GLY VAL PRO VAL ARG SEQRES 10 B 215 PRO PRO LEU PRO HIS PRO PHE THR GLU TRP ARG GLU ILE SEQRES 11 B 215 ALA THR SER ARG LEU LEU ASP ALA VAL ARG GLN SER ASP SEQRES 12 B 215 VAL HIS GLN ASP ILE ASP VAL ASP SER VAL ALA HIS THR SEQRES 13 B 215 LEU VAL CYS SER VAL VAL GLY THR ARG VAL VAL GLY GLY SEQRES 14 B 215 THR LEU GLU PRO ALA GLY ARG GLU PRO ARG ARG LEU ALA SEQRES 15 B 215 GLU MSE TRP TYR ILE LEU ILE ARG GLY MSE VAL PRO VAL SEQRES 16 B 215 THR ARG ARG ALA ARG TYR VAL THR LEU ALA ALA ARG LEU SEQRES 17 B 215 GLU GLN GLU THR GLY THR ALA MODRES 1UI5 MSE A 87 MET SELENOMETHIONINE MODRES 1UI5 MSE A 93 MET SELENOMETHIONINE MODRES 1UI5 MSE A 184 MET SELENOMETHIONINE MODRES 1UI5 MSE A 192 MET SELENOMETHIONINE MODRES 1UI5 MSE B 87 MET SELENOMETHIONINE MODRES 1UI5 MSE B 93 MET SELENOMETHIONINE MODRES 1UI5 MSE B 184 MET SELENOMETHIONINE MODRES 1UI5 MSE B 192 MET SELENOMETHIONINE HET MSE A 87 8 HET MSE A 93 8 HET MSE A 184 8 HET MSE A 192 8 HET MSE B 87 8 HET MSE B 93 8 HET MSE B 184 8 HET MSE B 192 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *75(H2 O) HELIX 1 1 GLN A 9 GLY A 26 1 18 HELIX 2 2 THR A 31 GLY A 40 1 10 HELIX 3 3 THR A 42 PHE A 50 1 9 HELIX 4 4 ALA A 52 LEU A 75 1 24 HELIX 5 5 SER A 81 GLY A 100 1 20 HELIX 6 6 GLY A 100 ALA A 112 1 13 HELIX 7 7 HIS A 122 GLN A 141 1 20 HELIX 8 8 ASP A 149 GLY A 163 1 15 HELIX 9 9 ARG A 176 VAL A 193 1 18 HELIX 10 10 ARG A 197 THR A 212 1 16 HELIX 11 11 LEU B 5 GLY B 26 1 22 HELIX 12 12 THR B 31 GLY B 40 1 10 HELIX 13 13 THR B 42 PHE B 50 1 9 HELIX 14 14 ALA B 52 ASP B 74 1 23 HELIX 15 15 SER B 81 GLY B 100 1 20 HELIX 16 16 PRO B 101 ALA B 112 1 12 HELIX 17 17 HIS B 122 GLN B 141 1 20 HELIX 18 18 ASP B 149 GLY B 163 1 15 HELIX 19 19 THR B 164 GLY B 168 5 5 HELIX 20 20 ARG B 176 VAL B 193 1 18 HELIX 21 21 ARG B 197 GLY B 213 1 17 SSBOND 1 CYS A 159 CYS B 159 1555 1555 2.03 LINK C LEU A 86 N MSE A 87 1555 1555 1.36 LINK C MSE A 87 N ARG A 88 1555 1555 1.34 LINK C GLY A 92 N MSE A 93 1555 1555 1.35 LINK C MSE A 93 N ALA A 94 1555 1555 1.41 LINK C GLU A 183 N MSE A 184 1555 1555 1.36 LINK C MSE A 184 N TRP A 185 1555 1555 1.41 LINK C GLY A 191 N MSE A 192 1555 1555 1.30 LINK C MSE A 192 N VAL A 193 1555 1555 1.32 LINK C LEU B 86 N MSE B 87 1555 1555 1.41 LINK C MSE B 87 N ARG B 88 1555 1555 1.32 LINK C GLY B 92 N MSE B 93 1555 1555 1.47 LINK C MSE B 93 N ALA B 94 1555 1555 1.29 LINK C GLU B 183 N MSE B 184 1555 1555 1.42 LINK C MSE B 184 N TRP B 185 1555 1555 1.40 LINK C GLY B 191 N MSE B 192 1555 1555 1.40 LINK C MSE B 192 N VAL B 193 1555 1555 1.39 CRYST1 38.153 68.066 145.422 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006877 0.00000