HEADER RNA BINDING PROTEIN 17-JUL-03 1UIL TITLE DOUBLE-STRANDED RNA-BINDING MOTIF OF HYPOTHETICAL PROTEIN BAB28848 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE-STRANDED RNA-BINDING MOTIF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-113; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN BAB28848; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2810480H04; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P021209-28 KEYWDS STRUCTURAL GENOMICS, DOUBLE-STRANDED RNA-BINDING MOTIF, DSRM, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,F.HAYASHI,H.HAMANA,M.SHIROUZU,T.TERADA,T.KIGAWA, AUTHOR 2 M.INOUE,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA, AUTHOR 3 N.KOBAYASHI,A.TANAKA,T.OSANAI,Y.MATSUO,Y.HAYASHIZAKI,S.YOKOYAMA, AUTHOR 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UIL 1 REMARK REVDAT 3 02-MAR-22 1UIL 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UIL 1 VERSN REVDAT 1 16-NOV-04 1UIL 0 JRNL AUTH T.NAGATA,Y.MUTO,F.HAYASHI,H.HAMANA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 T.KIGAWA,M.INOUE,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA, JRNL AUTH 3 M.YOSHIDA,N.KOBAYASHI,A.TANAKA,T.OSANAI,Y.MATSUO, JRNL AUTH 4 Y.HAYASHIZAKI,S.YOKOYAMA JRNL TITL STRUCTURE OF DOUBLE-STRANDED RNA-BINDING MOTIF OF JRNL TITL 2 HYPOTHETICAL PROTEIN BAB28848 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : KUJIRA 0.816, CYANA 1.0 REMARK 3 AUTHORS : KOBAYASHI, N. (KUJIRA), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UIL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000005863. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM PROTEIN U-15N, 13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, NMRPIPE 1.8, REMARK 210 CYANA 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 48 H ILE A 59 1.54 REMARK 500 O ASN A 16 H LEU A 19 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -58.39 74.74 REMARK 500 1 SER A 3 164.22 61.94 REMARK 500 1 LEU A 15 -75.77 -116.14 REMARK 500 1 LEU A 25 -39.82 -33.78 REMARK 500 1 LYS A 29 -74.35 -47.29 REMARK 500 1 ARG A 76 95.50 -167.12 REMARK 500 1 LEU A 84 -73.49 -47.50 REMARK 500 1 ALA A 105 148.37 -39.42 REMARK 500 1 SER A 108 95.48 -44.19 REMARK 500 1 SER A 111 170.82 58.34 REMARK 500 2 SER A 2 129.53 63.40 REMARK 500 2 SER A 3 -59.17 -129.02 REMARK 500 2 SER A 5 101.97 64.15 REMARK 500 2 SER A 6 79.13 -159.97 REMARK 500 2 LEU A 8 84.94 55.58 REMARK 500 2 SER A 10 84.84 -61.62 REMARK 500 2 ASP A 14 109.98 58.28 REMARK 500 2 LEU A 15 -74.12 -109.53 REMARK 500 2 LYS A 29 -73.04 -45.36 REMARK 500 2 ARG A 76 97.55 -171.21 REMARK 500 2 LEU A 84 -72.10 -39.70 REMARK 500 2 TYR A 106 -149.45 -61.66 REMARK 500 2 SER A 107 38.79 171.47 REMARK 500 3 SER A 2 96.68 48.91 REMARK 500 3 LEU A 8 62.32 -118.97 REMARK 500 3 GLU A 9 47.02 39.99 REMARK 500 3 SER A 10 87.80 -55.75 REMARK 500 3 GLU A 12 42.78 -89.53 REMARK 500 3 LEU A 15 -70.04 -86.94 REMARK 500 3 LYS A 29 -74.26 -39.96 REMARK 500 3 ASN A 55 86.83 -151.35 REMARK 500 3 ARG A 76 92.42 -166.46 REMARK 500 3 LYS A 83 -71.01 -46.96 REMARK 500 3 LEU A 84 -70.93 -39.60 REMARK 500 3 ALA A 90 -71.33 -45.54 REMARK 500 3 LEU A 91 -35.55 -39.61 REMARK 500 3 ALA A 105 139.26 -39.55 REMARK 500 3 SER A 112 -58.82 -136.21 REMARK 500 4 SER A 6 128.99 -177.98 REMARK 500 4 SER A 10 85.48 -61.81 REMARK 500 4 LEU A 15 -75.97 -92.14 REMARK 500 4 ALA A 30 -70.61 -49.46 REMARK 500 4 ARG A 76 88.50 -170.09 REMARK 500 4 SER A 80 -67.85 -96.65 REMARK 500 4 LYS A 83 -72.69 -53.49 REMARK 500 4 LEU A 84 -73.45 -41.51 REMARK 500 4 LEU A 91 -33.09 -39.54 REMARK 500 4 ALA A 105 139.50 -39.53 REMARK 500 4 SER A 108 170.42 -53.16 REMARK 500 4 SER A 111 112.07 -171.49 REMARK 500 REMARK 500 THIS ENTRY HAS 262 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007009190.1 RELATED DB: TARGETDB DBREF 1UIL A 8 107 UNP O70133 DHX9_MOUSE 163 262 SEQADV 1UIL GLY A 1 UNP O70133 CLONING ARTIFACT SEQADV 1UIL SER A 2 UNP O70133 CLONING ARTIFACT SEQADV 1UIL SER A 3 UNP O70133 CLONING ARTIFACT SEQADV 1UIL GLY A 4 UNP O70133 CLONING ARTIFACT SEQADV 1UIL SER A 5 UNP O70133 CLONING ARTIFACT SEQADV 1UIL SER A 6 UNP O70133 CLONING ARTIFACT SEQADV 1UIL GLY A 7 UNP O70133 CLONING ARTIFACT SEQADV 1UIL SER A 108 UNP O70133 CLONING ARTIFACT SEQADV 1UIL GLY A 109 UNP O70133 CLONING ARTIFACT SEQADV 1UIL PRO A 110 UNP O70133 CLONING ARTIFACT SEQADV 1UIL SER A 111 UNP O70133 CLONING ARTIFACT SEQADV 1UIL SER A 112 UNP O70133 CLONING ARTIFACT SEQADV 1UIL GLY A 113 UNP O70133 CLONING ARTIFACT SEQRES 1 A 113 GLY SER SER GLY SER SER GLY LEU GLU SER GLU GLU VAL SEQRES 2 A 113 ASP LEU ASN ALA GLY LEU HIS GLY ASN TRP THR LEU GLU SEQRES 3 A 113 ASN ALA LYS ALA ARG LEU ASN GLN TYR PHE GLN LYS GLU SEQRES 4 A 113 LYS ILE GLN GLY GLU TYR LYS TYR THR GLN VAL GLY PRO SEQRES 5 A 113 ASP HIS ASN ARG SER PHE ILE ALA GLU MET THR ILE TYR SEQRES 6 A 113 ILE LYS GLN LEU GLY ARG ARG ILE PHE ALA ARG GLU HIS SEQRES 7 A 113 GLY SER ASN LYS LYS LEU ALA ALA GLN SER CYS ALA LEU SEQRES 8 A 113 SER LEU VAL ARG GLN LEU TYR HIS LEU GLY VAL ILE GLU SEQRES 9 A 113 ALA TYR SER SER GLY PRO SER SER GLY HELIX 1 1 ASN A 16 GLY A 21 1 6 HELIX 2 2 THR A 24 GLU A 39 1 16 HELIX 3 3 ASN A 81 GLY A 101 1 21 SHEET 1 A 3 LYS A 46 VAL A 50 0 SHEET 2 A 3 SER A 57 ILE A 66 -1 O ILE A 59 N THR A 48 SHEET 3 A 3 ARG A 71 ARG A 76 -1 O ARG A 71 N ILE A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1