HEADER NUCLEOTIDE MONOPHOSPHATE KINASE 07-JAN-98 1UKE TITLE UMP/CMP KINASE FROM SLIME MOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UMP/CMP KINASE; COMPND 5 EC: 2.7.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 STRAIN: AX2-214; SOURCE 5 GENE: KCY_DICDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIMS5-CDUK-1; SOURCE 9 EXPRESSION_SYSTEM_GENE: KCY_DICDI KEYWDS NMP KINASE, NUCLEOTIDE SPECIFICITY, PHOSPHORYL TRANSFER, BISUBSTRATE KEYWDS 2 INHIBITOR, NUCLEOTIDE MONOPHOSPHATE KINASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SCHEFFZEK,W.KLICHE,L.WIESMUELLER,J.REINSTEIN REVDAT 4 03-APR-24 1UKE 1 REMARK REVDAT 3 14-FEB-24 1UKE 1 REMARK LINK REVDAT 2 24-FEB-09 1UKE 1 VERSN REVDAT 1 29-APR-98 1UKE 0 SPRSDE 29-APR-98 1UKE 1UKD JRNL AUTH K.SCHEFFZEK,W.KLICHE,L.WIESMULLER,J.REINSTEIN JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF UMP/CMP KINASE FROM JRNL TITL 2 DICTYOSTELIUM DISCOIDEUM AND THE BISUBSTRATE INHIBITOR JRNL TITL 3 P1-(5'-ADENOSYL) P5-(5'-URIDYL) PENTAPHOSPHATE (UP5A) AND JRNL TITL 4 MG2+ AT 2.2 A: IMPLICATIONS FOR WATER-MEDIATED SPECIFICITY. JRNL REF BIOCHEMISTRY V. 35 9716 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8703943 JRNL DOI 10.1021/BI960642S REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.ABELE,G.E.SCHULZ REMARK 1 TITL HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST REMARK 1 TITL 2 LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF REMARK 1 TITL 3 PHOSPHORYL TRANSFER REMARK 1 REF PROTEIN SCI. V. 4 1262 1995 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.VONRHEIN,G.J.SCHLAUDERER,G.E.SCHULZ REMARK 1 TITL MOVIE OF THE STRUCTURAL CHANGES DURING A CATALYTIC CYCLE OF REMARK 1 TITL 2 NUCLEOSIDE MONOPHOSPHATE KINASES REMARK 1 REF STRUCTURE V. 3 483 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.J.MULLER-DIECKMANN,G.E.SCHULZ REMARK 1 TITL SUBSTRATE SPECIFICITY AND ASSEMBLY OF THE CATALYTIC CENTER REMARK 1 TITL 2 DERIVED FROM TWO STRUCTURES OF LIGATED URIDYLATE KINASE REMARK 1 REF J.MOL.BIOL. V. 246 522 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.WIESMULLER,K.SCHEFFZEK,W.KLICHE,R.S.GOODY,A.WITTINGHOFER, REMARK 1 AUTH 2 J.REINSTEIN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 UMP/CMP-KINASE FROM DICTYOSTELIUM DISCOIDEUM WITH THE REMARK 1 TITL 3 SPECIFIC BISUBSTRATE INHIBITOR P1-(ADENOSINE 5')-P5-(URIDINE REMARK 1 TITL 4 5')-PENTAPHOSPHATE (UP5A) REMARK 1 REF FEBS LETT. V. 363 22 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 5 REMARK 1 AUTH L.WIESMULLER,A.A.NOEGEL,O.BARZU,G.GERISCH,M.SCHLEICHER REMARK 1 TITL CDNA-DERIVED SEQUENCE OF UMP-CMP KINASE FROM DICTYOSTELIUM REMARK 1 TITL 2 DISCOIDEUM AND EXPRESSION OF THE ENZYME IN ESCHERICHIA COLI REMARK 1 REF J.BIOL.CHEM. V. 265 6339 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 SIDE CHAINS OF THE FOLLOWING RESIDUES ARE NOT ENTIRELY WELL REMARK 3 DEFINED IN THE DENSITY AND WERE MODELLED BY REMARK 3 STEREOCHEMISTRY: LYS 2, GLU 3, LYS 5, LYS 50, GLU 53, REMARK 3 LYS 60, LYS 72, GLN 82, LYS 106, PHE 108, SER 135, ARG 137, REMARK 3 LYS 146. IN THE CASE OF ARG 137 DENSITY FOR MAIN CHAIN REMARK 3 ATOMS IS DISCONNECTIVE. REMARK 4 REMARK 4 1UKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-93 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 8. REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NICKEL COATED FRANKS DOUBLE REMARK 200 MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.05200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MULTIPLE ISOMORPHOUS REMARK 200 REPLACEMENT (MIR) REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: ADENYLATE KINASE (PORCINE), PDB ENTRY 1ADK3 REMARK 200 REMARK 200 REMARK: NUMBER OF MEASURED REFLECTIONS : 119529 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REFERENCE 4, PH 8. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.75000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.25000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.37500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.25000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.12500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.37500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.12500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 93 H1 HOH A 233 0.92 REMARK 500 H GLY A 14 H2 HOH A 226 1.00 REMARK 500 HH11 ARG A 42 H2 HOH A 238 1.27 REMARK 500 HH21 ARG A 93 H2 HOH A 213 1.31 REMARK 500 H3U UP5 A 195 H2 HOH A 200 1.32 REMARK 500 HE21 GLN A 155 H2 HOH A 214 1.32 REMARK 500 HD22 ASN A 150 H1 HOH A 211 1.32 REMARK 500 H GLY A 38 H1 HOH A 208 1.35 REMARK 500 OD1 ASN A 97 H1 HOH A 200 1.53 REMARK 500 OD2 ASP A 89 H1 HOH A 227 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 -32.49 -175.67 REMARK 500 GLU A 53 -43.43 81.97 REMARK 500 ASN A 81 60.79 -119.92 REMARK 500 SER A 135 51.63 28.41 REMARK 500 ASP A 140 50.41 -93.52 REMARK 500 ASN A 175 42.56 -90.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 196 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UP5 A 195 O2B REMARK 620 2 UP5 A 195 O2G 80.0 REMARK 620 3 HOH A 198 O 87.5 97.2 REMARK 620 4 HOH A 215 O 159.9 80.8 100.9 REMARK 620 5 HOH A 220 O 85.2 82.5 172.6 86.3 REMARK 620 6 HOH A 227 O 104.8 168.3 93.7 93.0 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UP5 A 195 DBREF 1UKE A 1 194 UNP P20425 KCY_DICDI 1 194 SEQRES 1 A 194 MET GLU LYS SER LYS PRO ASN VAL VAL PHE VAL LEU GLY SEQRES 2 A 194 GLY PRO GLY SER GLY LYS GLY THR GLN CYS ALA ASN ILE SEQRES 3 A 194 VAL ARG ASP PHE GLY TRP VAL HIS LEU SER ALA GLY ASP SEQRES 4 A 194 LEU LEU ARG GLN GLU GLN GLN SER GLY SER LYS ASP GLY SEQRES 5 A 194 GLU MET ILE ALA THR MET ILE LYS ASN GLY GLU ILE VAL SEQRES 6 A 194 PRO SER ILE VAL THR VAL LYS LEU LEU LYS ASN ALA ILE SEQRES 7 A 194 ASP ALA ASN GLN GLY LYS ASN PHE LEU VAL ASP GLY PHE SEQRES 8 A 194 PRO ARG ASN GLU GLU ASN ASN ASN SER TRP GLU GLU ASN SEQRES 9 A 194 MET LYS ASP PHE VAL ASP THR LYS PHE VAL LEU PHE PHE SEQRES 10 A 194 ASP CYS PRO GLU GLU VAL MET THR GLN ARG LEU LEU LYS SEQRES 11 A 194 ARG GLY GLU SER SER GLY ARG SER ASP ASP ASN ILE GLU SEQRES 12 A 194 SER ILE LYS LYS ARG PHE ASN THR PHE ASN VAL GLN THR SEQRES 13 A 194 LYS LEU VAL ILE ASP HIS TYR ASN LYS PHE ASP LYS VAL SEQRES 14 A 194 LYS ILE ILE PRO ALA ASN ARG ASP VAL ASN GLU VAL TYR SEQRES 15 A 194 ASN ASP VAL GLU ASN LEU PHE LYS SER MET GLY PHE HET MG A 196 1 HET UP5 A 195 76 HETNAM MG MAGNESIUM ION HETNAM UP5 P1-(ADENOSINE-5'-P5-(URIDINE-5')PENTAPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 UP5 C19 H28 N7 O24 P5 FORMUL 4 HOH *43(H2 O) HELIX 1 1 LYS A 19 PHE A 30 1 12 HELIX 2 2 ALA A 37 GLN A 46 1 10 HELIX 3 3 MET A 54 ASN A 61 1 8 HELIX 4 4 SER A 67 ASN A 81 1 15 HELIX 5 5 GLU A 95 ASN A 104 1 10 HELIX 6 6 GLU A 121 GLU A 133 1 13 HELIX 7 7 ILE A 142 LYS A 165 1 24 HELIX 8 8 VAL A 178 SER A 191 1 14 SHEET 1 A 5 VAL A 33 SER A 36 0 SHEET 2 A 5 PHE A 86 ASP A 89 1 N LEU A 87 O VAL A 33 SHEET 3 A 5 PRO A 6 GLY A 13 1 N VAL A 9 O PHE A 86 SHEET 4 A 5 VAL A 109 ASP A 118 1 N ASP A 110 O PRO A 6 SHEET 5 A 5 VAL A 169 PRO A 173 1 N LYS A 170 O VAL A 114 LINK O2B UP5 A 195 MG MG A 196 1555 1555 2.26 LINK O2G UP5 A 195 MG MG A 196 1555 1555 2.25 LINK MG MG A 196 O HOH A 198 1555 1555 2.29 LINK MG MG A 196 O HOH A 215 1555 1555 2.33 LINK MG MG A 196 O HOH A 220 1555 1555 2.39 LINK MG MG A 196 O HOH A 227 1555 1555 2.35 CISPEP 1 PHE A 91 PRO A 92 0 2.02 SITE 1 AC1 5 UP5 A 195 HOH A 198 HOH A 215 HOH A 220 SITE 2 AC1 5 HOH A 227 SITE 1 AC2 37 GLY A 14 PRO A 15 GLY A 16 SER A 17 SITE 2 AC2 37 GLY A 18 LYS A 19 GLY A 20 THR A 21 SITE 3 AC2 37 ALA A 37 GLY A 38 LEU A 41 ARG A 42 SITE 4 AC2 37 ILE A 59 GLU A 63 ILE A 64 VAL A 65 SITE 5 AC2 37 THR A 70 GLY A 90 PHE A 91 ARG A 93 SITE 6 AC2 37 ARG A 127 ARG A 131 ARG A 137 ARG A 148 SITE 7 AC2 37 ARG A 176 VAL A 178 MG A 196 HOH A 198 SITE 8 AC2 37 HOH A 199 HOH A 200 HOH A 208 HOH A 212 SITE 9 AC2 37 HOH A 213 HOH A 215 HOH A 216 HOH A 220 SITE 10 AC2 37 HOH A 232 CRYST1 78.500 78.500 101.500 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009852 0.00000