HEADER SIGNALING PROTEIN 09-SEP-03 1UL3 TITLE CRYSTAL STRUCTURE OF PII FROM SYNECHOCYSTIS SP. PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PII SIGNAL TRANSDUCING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1143; SOURCE 4 GENE: GLNB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAB11 KEYWDS NITROGEN REGULATION, CYANOBACTERIA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XU,P.D.CARR,P.CLANCY,M.GARCIA-DOMINGUEZ,K.FORCHHAMMER,F.FLORENCIO, AUTHOR 2 N.TANDEAU DE MARSAC,S.G.VASUDEVAN,D.L.OLLIS REVDAT 4 25-OCT-23 1UL3 1 REMARK LINK REVDAT 3 13-JUL-11 1UL3 1 VERSN REVDAT 2 24-FEB-09 1UL3 1 VERSN REVDAT 1 16-DEC-03 1UL3 0 JRNL AUTH Y.XU,P.D.CARR,P.CLANCY,M.GARCIA-DOMINGUEZ,K.FORCHHAMMER, JRNL AUTH 2 F.FLORENCIO,S.G.VASUDEVAN,N.TANDEAU DE MARSAC,D.L.OLLIS JRNL TITL THE STRUCTURES OF THE PII PROTEINS FROM THE CYANOBACTERIA JRNL TITL 2 SYNECHOCOCCUS SP. PCC 7942 AND SYNECHOCYSTIS SP. PCC 6803. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 2183 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 14646076 JRNL DOI 10.1107/S0907444903019589 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 30958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2456 REMARK 3 BIN FREE R VALUE : 0.3159 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.36000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : 2.73000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 25.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.260 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.64 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.170 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000005946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.950 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.16700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PII MINUS RESIDUES 37-55 AND 109-112 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, CALCIUM CHLORIDE, SODIUM REMARK 280 ACETATE, PH 4.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.78450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.40335 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.77633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.78450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.40335 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.77633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.78450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.40335 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.77633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.80670 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.55267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.80670 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.55267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.80670 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.55267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAINS A, B, C FORM A TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 64.78450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 112.21005 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -64.78450 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 112.21005 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 224.42009 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -129.56900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 149.61339 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 24.77633 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -129.56900 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 149.61339 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -49.55267 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 GLN A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 ARG A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 THR A 52 REMARK 465 VAL A 53 REMARK 465 GLY B 37 REMARK 465 ARG B 38 REMARK 465 GLN B 39 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 GLN B 42 REMARK 465 THR B 43 REMARK 465 GLU B 44 REMARK 465 ARG B 45 REMARK 465 TYR B 46 REMARK 465 ARG B 47 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 GLU B 50 REMARK 465 TYR B 51 REMARK 465 THR B 52 REMARK 465 VAL B 53 REMARK 465 GLU B 54 REMARK 465 GLY C 37 REMARK 465 ARG C 38 REMARK 465 GLN C 39 REMARK 465 LYS C 40 REMARK 465 GLY C 41 REMARK 465 GLN C 42 REMARK 465 THR C 43 REMARK 465 GLU C 44 REMARK 465 ARG C 45 REMARK 465 TYR C 46 REMARK 465 ARG C 47 REMARK 465 GLY C 48 REMARK 465 SER C 49 REMARK 465 GLU C 50 REMARK 465 TYR C 51 REMARK 465 THR C 52 REMARK 465 VAL C 53 REMARK 465 GLU C 54 REMARK 465 GLN D 39 REMARK 465 LYS D 40 REMARK 465 GLY D 41 REMARK 465 GLN D 42 REMARK 465 THR D 43 REMARK 465 GLU D 44 REMARK 465 ARG D 45 REMARK 465 TYR D 46 REMARK 465 ARG D 47 REMARK 465 GLY D 48 REMARK 465 SER D 49 REMARK 465 GLU D 50 REMARK 465 TYR D 51 REMARK 465 THR D 52 REMARK 465 VAL D 53 REMARK 465 ALA D 111 REMARK 465 ILE D 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 ARG D 38 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 54 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 3.63 -69.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 11 O REMARK 620 2 ASP A 14 OD1 95.9 REMARK 620 3 ASP A 14 OD2 112.4 44.0 REMARK 620 4 GLU A 15 OE1 78.8 79.8 122.5 REMARK 620 5 PHE C 11 O 174.3 87.1 66.7 106.5 REMARK 620 6 ASP C 14 OD1 82.7 121.9 82.9 152.9 91.6 REMARK 620 7 ASP C 14 OD2 68.0 81.4 56.5 139.7 107.8 44.1 REMARK 620 8 GLU C 15 OE2 87.8 151.9 155.5 73.5 91.7 86.3 125.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 11 O REMARK 620 2 ASP B 14 OD2 113.4 REMARK 620 3 ASP B 14 OD1 85.1 45.4 REMARK 620 4 GLU B 15 OE2 80.6 110.6 71.5 REMARK 620 5 PHE D 11 O 173.1 65.2 89.6 93.5 REMARK 620 6 ASP D 14 OD1 89.2 93.2 129.4 156.1 97.6 REMARK 620 7 ASP D 14 OD2 73.3 57.7 78.0 141.3 109.9 52.4 REMARK 620 8 GLU D 15 OE1 87.2 159.3 141.7 70.2 94.2 87.9 134.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PII RELATED DB: PDB REMARK 900 SAME PROTEIN FROM E.COLI REMARK 900 RELATED ID: 1HWU RELATED DB: PDB REMARK 900 SAME PROTEIN FROM HERBASPIRILLUM SEROPEDICAE DBREF 1UL3 A 1 112 UNP Q55247 GLNB_SYNY3 1 112 DBREF 1UL3 B 1 112 UNP Q55247 GLNB_SYNY3 1 112 DBREF 1UL3 C 1 112 UNP Q55247 GLNB_SYNY3 1 112 DBREF 1UL3 D 1 112 UNP Q55247 GLNB_SYNY3 1 112 SEQRES 1 A 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 A 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 A 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 A 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 A 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 A 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 A 112 GLY GLU LYS ASP THR GLU ALA ILE SEQRES 1 B 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 B 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 B 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 B 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 B 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 B 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 B 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 B 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 B 112 GLY GLU LYS ASP THR GLU ALA ILE SEQRES 1 C 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 C 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 C 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 C 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 C 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 C 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 C 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 C 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 C 112 GLY GLU LYS ASP THR GLU ALA ILE SEQRES 1 D 112 MET LYS LYS VAL GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 D 112 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 D 112 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 D 112 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 D 112 VAL GLU PHE LEU GLN LYS LEU LYS ILE GLU ILE VAL VAL SEQRES 6 D 112 ASP GLU GLY GLN VAL ASP MET VAL VAL ASP LYS LEU VAL SEQRES 7 D 112 SER ALA ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 8 D 112 PHE ILE SER PRO VAL ASP SER VAL VAL ARG ILE ARG THR SEQRES 9 D 112 GLY GLU LYS ASP THR GLU ALA ILE HET GOL A 500 6 HET CA B 602 1 HET CA C 601 1 HET GOL C 501 6 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 CA 2(CA 2+) FORMUL 9 HOH *212(H2 O) HELIX 1 1 ARG A 9 PHE A 11 5 3 HELIX 2 2 LYS A 12 ASN A 22 1 11 HELIX 3 3 ASP A 66 GLY A 68 5 3 HELIX 4 4 GLN A 69 ARG A 82 1 14 HELIX 5 5 ARG B 9 PHE B 11 5 3 HELIX 6 6 LYS B 12 ASN B 22 1 11 HELIX 7 7 ASP B 66 GLY B 68 5 3 HELIX 8 8 GLN B 69 ARG B 82 1 14 HELIX 9 9 ARG C 9 PHE C 11 5 3 HELIX 10 10 LYS C 12 ALA C 23 1 12 HELIX 11 11 ASP C 66 GLY C 68 5 3 HELIX 12 12 GLN C 69 ARG C 82 1 14 HELIX 13 13 ARG D 9 PHE D 11 5 3 HELIX 14 14 LYS D 12 ALA D 23 1 12 HELIX 15 15 ASP D 66 GLY D 68 5 3 HELIX 16 16 GLN D 69 ARG D 82 1 14 SHEET 1 A25 LYS A 107 THR A 109 0 SHEET 2 A25 SER A 98 ARG A 101 -1 O VAL A 99 N ASP A 108 SHEET 3 A25 LYS B 90 PRO B 95 -1 O ILE B 91 N VAL A 100 SHEET 4 A25 LYS B 2 ILE B 8 -1 N LYS B 3 O SER B 94 SHEET 5 A25 LEU B 56 VAL B 65 -1 N LEU B 59 O ILE B 8 SHEET 6 A25 MET B 28 PHE B 36 -1 O THR B 29 N GLU B 62 SHEET 7 A25 MET A 28 GLY A 35 -1 O MET A 28 N PHE B 36 SHEET 8 A25 THR C 29 PHE C 36 1 N VAL C 30 O ARG A 34 SHEET 9 A25 LEU C 56 VAL C 65 -1 O LEU C 56 N GLY C 35 SHEET 10 A25 LYS C 2 ILE C 8 -1 N LYS C 2 O VAL C 65 SHEET 11 A25 LYS C 90 PRO C 95 -1 O LYS C 90 N ILE C 7 SHEET 12 A25 SER B 98 ARG B 101 -1 O SER B 98 N ILE C 93 SHEET 13 A25 GLU B 106 THR B 109 -1 O GLU B 106 N ARG B 101 SHEET 14 A25 SER B 98 ARG B 101 -1 O VAL B 99 N ASP B 108 SHEET 15 A25 LYS C 90 PRO C 95 -1 O ILE C 91 N VAL B 100 SHEET 16 A25 LYS C 2 ILE C 8 -1 N LYS C 3 O SER C 94 SHEET 17 A25 LEU C 56 VAL C 65 -1 O LEU C 59 N ILE C 8 SHEET 18 A25 THR C 29 PHE C 36 -1 O THR C 29 N GLU C 62 SHEET 19 A25 MET B 28 PHE B 36 -1 O MET B 28 N PHE C 36 SHEET 20 A25 MET A 28 GLY A 35 -1 O MET A 28 N PHE B 36 SHEET 21 A25 LEU A 56 VAL A 65 -1 O LEU A 56 N GLY A 35 SHEET 22 A25 LYS A 2 ILE A 8 -1 N LYS A 2 O VAL A 65 SHEET 23 A25 LYS A 90 PRO A 95 -1 O LYS A 90 N ILE A 7 SHEET 24 A25 SER C 98 ARG C 101 -1 O SER C 98 N ILE A 93 SHEET 25 A25 GLU C 106 THR C 109 -1 O GLU C 106 N ARG C 101 SHEET 1 B 4 THR D 29 PHE D 36 0 SHEET 2 B 4 PHE D 55 VAL D 65 -1 O LEU D 56 N GLY D 35 SHEET 3 B 4 LYS D 2 ILE D 8 -1 N LYS D 2 O VAL D 65 SHEET 4 B 4 LYS D 90 PRO D 95 -1 O LYS D 90 N ILE D 7 SHEET 1 C 2 VAL D 99 VAL D 100 0 SHEET 2 C 2 LYS D 107 ASP D 108 -1 N ASP D 108 O VAL D 99 LINK O PHE A 11 CA CA C 601 6465 1555 2.31 LINK OD1 ASP A 14 CA CA C 601 6465 1555 2.24 LINK OD2 ASP A 14 CA CA C 601 6465 1555 3.15 LINK OE1AGLU A 15 CA CA C 601 6465 1555 2.12 LINK O PHE B 11 CA CA B 602 1555 1555 2.45 LINK OD2 ASP B 14 CA CA B 602 1555 1555 3.06 LINK OD1 ASP B 14 CA CA B 602 1555 1555 2.38 LINK OE2AGLU B 15 CA CA B 602 1555 1555 2.22 LINK CA CA B 602 O PHE D 11 1555 5564 2.25 LINK CA CA B 602 OD1 ASP D 14 1555 5564 2.04 LINK CA CA B 602 OD2 ASP D 14 1555 5564 2.72 LINK CA CA B 602 OE1AGLU D 15 1555 5564 2.64 LINK O PHE C 11 CA CA C 601 1555 1555 2.27 LINK OD1 ASP C 14 CA CA C 601 1555 1555 2.31 LINK OD2 ASP C 14 CA CA C 601 1555 1555 3.16 LINK OE2AGLU C 15 CA CA C 601 1555 1555 2.21 SITE 1 AC1 6 PHE A 11 ASP A 14 GLU A 15 PHE C 11 SITE 2 AC1 6 ASP C 14 GLU C 15 SITE 1 AC2 6 PHE B 11 ASP B 14 GLU B 15 PHE D 11 SITE 2 AC2 6 ASP D 14 GLU D 15 SITE 1 AC3 7 PHE A 36 LYS A 58 GLY A 89 LYS A 90 SITE 2 AC3 7 HOH A 525 HOH A 526 MET C 28 SITE 1 AC4 7 LYS A 90 PHE A 92 VAL C 26 GLY C 27 SITE 2 AC4 7 ILE C 63 VAL C 64 HOH C 627 CRYST1 129.569 129.569 74.329 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007718 0.004456 0.000000 0.00000 SCALE2 0.000000 0.008912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013454 0.00000