data_1UMQ # _entry.id 1UMQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UMQ pdb_00001umq 10.2210/pdb1umq/pdb PDBE EBI-13385 ? ? WWPDB D_1290013385 ? ? BMRB 5920 ? ? # _pdbx_database_related.db_id 5920 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UMQ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-08-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Laguri, C.' 1 'Phillips-Jones, M.K.' 2 'Williamson, M.P.' 3 # _citation.id primary _citation.title ;Solution Structure and DNA Binding of the Effector Domain from the Global Regulator Prra(Rega) from Rhodobacter Sphaeroides: Insights Into DNA Binding Specificity ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 31 _citation.page_first 6778 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14627811 _citation.pdbx_database_id_DOI 10.1093/NAR/GKG891 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Laguri, C.' 1 ? primary 'Phillips-Jones, M.K.' 2 ? primary 'Williamson, M.P.' 3 ? # _cell.entry_id 1UMQ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UMQ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'PHOTOSYNTHETIC APPARATUS REGULATORY PROTEIN' _entity.formula_weight 9482.878 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'DNA BINDING DOMAIN, RESIDUES 125-184' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'REGA, REGA PROTEIN, RESPONSE REGULATOR, PRRA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMLAKGESLPPPPENPMSADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKRSP R ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMLAKGESLPPPPENPMSADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKRSP R ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 LEU n 1 23 ALA n 1 24 LYS n 1 25 GLY n 1 26 GLU n 1 27 SER n 1 28 LEU n 1 29 PRO n 1 30 PRO n 1 31 PRO n 1 32 PRO n 1 33 GLU n 1 34 ASN n 1 35 PRO n 1 36 MET n 1 37 SER n 1 38 ALA n 1 39 ASP n 1 40 ARG n 1 41 VAL n 1 42 ARG n 1 43 TRP n 1 44 GLU n 1 45 HIS n 1 46 ILE n 1 47 GLN n 1 48 ARG n 1 49 ILE n 1 50 TYR n 1 51 GLU n 1 52 MET n 1 53 CYS n 1 54 ASP n 1 55 ARG n 1 56 ASN n 1 57 VAL n 1 58 SER n 1 59 GLU n 1 60 THR n 1 61 ALA n 1 62 ARG n 1 63 ARG n 1 64 LEU n 1 65 ASN n 1 66 MET n 1 67 HIS n 1 68 ARG n 1 69 ARG n 1 70 THR n 1 71 LEU n 1 72 GLN n 1 73 ARG n 1 74 ILE n 1 75 LEU n 1 76 ALA n 1 77 LYS n 1 78 ARG n 1 79 SER n 1 80 PRO n 1 81 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RHODOBACTER SPHAEROIDES' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1063 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET14B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1UMQ 1 ? ? 1UMQ ? 2 UNP REGA_RHOSH 1 ? ? Q53228 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UMQ A 1 ? 21 ? 1UMQ 1 ? 21 ? 1 21 2 2 1UMQ A 22 ? 81 ? Q53228 125 ? 184 ? 22 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '13C-15N EDITED NOESY' 1 2 1 'CBCA(CO)NH' 1 3 1 HNCA 1 4 1 HNCACB 1 5 1 HNCO 1 6 1 'HN(CA)CO' 1 7 1 HCCH 1 8 1 'CCH TOCSY' 1 9 1 13C 1 10 1 '15N HSQC' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 275 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.6 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 DRX Bruker 500 2 DRX Bruker 600 # _pdbx_nmr_refine.entry_id 1UMQ _pdbx_nmr_refine.method 'DISTANCE AND DIHEDRAL RESTRAINTS (TALOS)' _pdbx_nmr_refine.details 'REFINEMENT IN EXPLICIT WATER AS DESCRIBED IN THE REFERENCE ABOVE' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1UMQ _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PRRA C-TERMINAL DOMAIN' # _pdbx_nmr_ensemble.entry_id 1UMQ _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria RANDOM # _pdbx_nmr_representative.entry_id 1UMQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement ARIA 1.2 'LINGE ET AL 2003' 1 'structure solution' ARIA 1.2 ? 2 # _exptl.entry_id 1UMQ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1UMQ _struct.title ;solution structure and DNA binding of the effector domain from the global regulator PrrA(RegA) from R. sphaeroides: Insights into DNA binding specificity ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UMQ _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;DNA-BINDING PROTEIN, RESPONSE REGULATOR, DNA BINDING DOMAIN, HELIX-TURN-HELIX, SENSORY TRANSDUCTION, PHOSPHORYLATION, TRANSCRIPTION REGULATION, DNA-BINDING, ACTIVATOR, DNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 38 ? CYS A 53 ? ALA A 38 CYS A 53 1 ? 16 HELX_P HELX_P2 2 VAL A 57 ? LEU A 64 ? VAL A 57 LEU A 64 1 ? 8 HELX_P HELX_P3 3 ARG A 68 ? LYS A 77 ? ARG A 68 LYS A 77 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1UMQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UMQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 HIS 5 5 ? ? ? A . n A 1 6 HIS 6 6 ? ? ? A . n A 1 7 HIS 7 7 ? ? ? A . n A 1 8 HIS 8 8 ? ? ? A . n A 1 9 HIS 9 9 ? ? ? A . n A 1 10 HIS 10 10 ? ? ? A . n A 1 11 SER 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 GLY 13 13 ? ? ? A . n A 1 14 LEU 14 14 ? ? ? A . n A 1 15 VAL 15 15 ? ? ? A . n A 1 16 PRO 16 16 ? ? ? A . n A 1 17 ARG 17 17 ? ? ? A . n A 1 18 GLY 18 18 ? ? ? A . n A 1 19 SER 19 19 ? ? ? A . n A 1 20 HIS 20 20 ? ? ? A . n A 1 21 MET 21 21 ? ? ? A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 MET 66 66 66 MET MET A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ARG 81 81 81 ARG ARG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-21 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-01-15 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Database references' 5 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.status_code_cs' 2 4 'Structure model' '_pdbx_database_status.status_code_mr' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 1UMQ _pdbx_entry_details.compound_details ;INVOLVED IN TRANSACTIVATING ANAEROBIC EXPRESSION OF THE PHOTOSYNTHETIC APPARATUS. IT IS A TRANSCRIPTIONAL REGULATOR THAT IS RESPONSIBLE FOR ACTIVATING EXPRESSION OF THE PUF, PUH, AND PUC OPERONS IN RESPONSE TO A DECREASE IN OXYGEN TENSION. THIS ENTRY CORRESPONDS TO RESIDUES 125 THROUGH 184 OF THE INTACT PROTEIN. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG3 A MET 66 ? ? HB A THR 70 ? ? 1.35 2 2 HB3 A SER 37 ? ? HB2 A ARG 40 ? ? 1.27 3 3 HG22 A ILE 49 ? ? HG22 A THR 60 ? ? 1.32 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 23 ? ? 61.69 177.70 2 1 PRO A 29 ? ? -32.32 119.84 3 1 ASN A 65 ? ? 62.94 69.65 4 1 PRO A 80 ? ? -77.80 29.82 5 2 SER A 27 ? ? 74.25 117.25 6 2 PRO A 29 ? ? -30.18 106.05 7 2 GLU A 33 ? ? 61.88 -117.39 8 2 SER A 37 ? ? 71.47 142.84 9 2 ASP A 54 ? ? 67.05 80.76 10 2 ARG A 78 ? ? -48.27 97.03 11 2 PRO A 80 ? ? -71.94 34.48 12 3 SER A 27 ? ? -156.19 -37.18 13 3 LEU A 28 ? ? 67.81 107.56 14 3 PRO A 29 ? ? -26.90 103.68 15 3 SER A 37 ? ? 65.80 125.42 16 3 ASP A 54 ? ? 60.48 76.89 17 3 PRO A 80 ? ? -70.25 41.90 18 4 PRO A 29 ? ? -31.65 111.09 19 4 PRO A 35 ? ? -38.97 -37.52 20 4 ARG A 78 ? ? -79.34 46.97 21 5 ALA A 23 ? ? -80.90 -155.53 22 5 SER A 27 ? ? 179.05 164.95 23 5 PRO A 29 ? ? -30.10 112.01 24 5 GLU A 33 ? ? 66.98 -167.52 25 5 PRO A 35 ? ? -37.54 -39.28 26 5 ASP A 54 ? ? 56.95 72.34 27 5 ARG A 78 ? ? -77.97 39.72 28 5 SER A 79 ? ? -147.83 -54.35 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A HIS 5 ? A HIS 5 6 1 Y 1 A HIS 6 ? A HIS 6 7 1 Y 1 A HIS 7 ? A HIS 7 8 1 Y 1 A HIS 8 ? A HIS 8 9 1 Y 1 A HIS 9 ? A HIS 9 10 1 Y 1 A HIS 10 ? A HIS 10 11 1 Y 1 A SER 11 ? A SER 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A GLY 13 ? A GLY 13 14 1 Y 1 A LEU 14 ? A LEU 14 15 1 Y 1 A VAL 15 ? A VAL 15 16 1 Y 1 A PRO 16 ? A PRO 16 17 1 Y 1 A ARG 17 ? A ARG 17 18 1 Y 1 A GLY 18 ? A GLY 18 19 1 Y 1 A SER 19 ? A SER 19 20 1 Y 1 A HIS 20 ? A HIS 20 21 1 Y 1 A MET 21 ? A MET 21 22 2 Y 1 A MET 1 ? A MET 1 23 2 Y 1 A GLY 2 ? A GLY 2 24 2 Y 1 A SER 3 ? A SER 3 25 2 Y 1 A SER 4 ? A SER 4 26 2 Y 1 A HIS 5 ? A HIS 5 27 2 Y 1 A HIS 6 ? A HIS 6 28 2 Y 1 A HIS 7 ? A HIS 7 29 2 Y 1 A HIS 8 ? A HIS 8 30 2 Y 1 A HIS 9 ? A HIS 9 31 2 Y 1 A HIS 10 ? A HIS 10 32 2 Y 1 A SER 11 ? A SER 11 33 2 Y 1 A SER 12 ? A SER 12 34 2 Y 1 A GLY 13 ? A GLY 13 35 2 Y 1 A LEU 14 ? A LEU 14 36 2 Y 1 A VAL 15 ? A VAL 15 37 2 Y 1 A PRO 16 ? A PRO 16 38 2 Y 1 A ARG 17 ? A ARG 17 39 2 Y 1 A GLY 18 ? A GLY 18 40 2 Y 1 A SER 19 ? A SER 19 41 2 Y 1 A HIS 20 ? A HIS 20 42 2 Y 1 A MET 21 ? A MET 21 43 3 Y 1 A MET 1 ? A MET 1 44 3 Y 1 A GLY 2 ? A GLY 2 45 3 Y 1 A SER 3 ? A SER 3 46 3 Y 1 A SER 4 ? A SER 4 47 3 Y 1 A HIS 5 ? A HIS 5 48 3 Y 1 A HIS 6 ? A HIS 6 49 3 Y 1 A HIS 7 ? A HIS 7 50 3 Y 1 A HIS 8 ? A HIS 8 51 3 Y 1 A HIS 9 ? A HIS 9 52 3 Y 1 A HIS 10 ? A HIS 10 53 3 Y 1 A SER 11 ? A SER 11 54 3 Y 1 A SER 12 ? A SER 12 55 3 Y 1 A GLY 13 ? A GLY 13 56 3 Y 1 A LEU 14 ? A LEU 14 57 3 Y 1 A VAL 15 ? A VAL 15 58 3 Y 1 A PRO 16 ? A PRO 16 59 3 Y 1 A ARG 17 ? A ARG 17 60 3 Y 1 A GLY 18 ? A GLY 18 61 3 Y 1 A SER 19 ? A SER 19 62 3 Y 1 A HIS 20 ? A HIS 20 63 3 Y 1 A MET 21 ? A MET 21 64 4 Y 1 A MET 1 ? A MET 1 65 4 Y 1 A GLY 2 ? A GLY 2 66 4 Y 1 A SER 3 ? A SER 3 67 4 Y 1 A SER 4 ? A SER 4 68 4 Y 1 A HIS 5 ? A HIS 5 69 4 Y 1 A HIS 6 ? A HIS 6 70 4 Y 1 A HIS 7 ? A HIS 7 71 4 Y 1 A HIS 8 ? A HIS 8 72 4 Y 1 A HIS 9 ? A HIS 9 73 4 Y 1 A HIS 10 ? A HIS 10 74 4 Y 1 A SER 11 ? A SER 11 75 4 Y 1 A SER 12 ? A SER 12 76 4 Y 1 A GLY 13 ? A GLY 13 77 4 Y 1 A LEU 14 ? A LEU 14 78 4 Y 1 A VAL 15 ? A VAL 15 79 4 Y 1 A PRO 16 ? A PRO 16 80 4 Y 1 A ARG 17 ? A ARG 17 81 4 Y 1 A GLY 18 ? A GLY 18 82 4 Y 1 A SER 19 ? A SER 19 83 4 Y 1 A HIS 20 ? A HIS 20 84 4 Y 1 A MET 21 ? A MET 21 85 5 Y 1 A MET 1 ? A MET 1 86 5 Y 1 A GLY 2 ? A GLY 2 87 5 Y 1 A SER 3 ? A SER 3 88 5 Y 1 A SER 4 ? A SER 4 89 5 Y 1 A HIS 5 ? A HIS 5 90 5 Y 1 A HIS 6 ? A HIS 6 91 5 Y 1 A HIS 7 ? A HIS 7 92 5 Y 1 A HIS 8 ? A HIS 8 93 5 Y 1 A HIS 9 ? A HIS 9 94 5 Y 1 A HIS 10 ? A HIS 10 95 5 Y 1 A SER 11 ? A SER 11 96 5 Y 1 A SER 12 ? A SER 12 97 5 Y 1 A GLY 13 ? A GLY 13 98 5 Y 1 A LEU 14 ? A LEU 14 99 5 Y 1 A VAL 15 ? A VAL 15 100 5 Y 1 A PRO 16 ? A PRO 16 101 5 Y 1 A ARG 17 ? A ARG 17 102 5 Y 1 A GLY 18 ? A GLY 18 103 5 Y 1 A SER 19 ? A SER 19 104 5 Y 1 A HIS 20 ? A HIS 20 105 5 Y 1 A MET 21 ? A MET 21 #