data_1UMU # _entry.id 1UMU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1UMU WWPDB D_1000176956 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UMU _pdbx_database_status.recvd_initial_deposition_date 1996-03-07 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Peat, T.S.' 1 'Hendrickson, W.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structure of the UmuD' protein and its regulation in response to DNA damage. ; Nature 380 727 730 1996 NATUAS UK 0028-0836 0006 ? 8614470 10.1038/380727a0 1 ;Production and Crystallization of a Selenomethionyl Variant of UmuD', an Escherichia Coli SOS Response Protein ; 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Peat, T.S.' 1 primary 'Frank, E.G.' 2 primary 'McDonald, J.P.' 3 primary 'Levine, A.S.' 4 primary 'Woodgate, R.' 5 primary 'Hendrickson, W.A.' 6 1 'Peat, T.S.' 7 1 'Frank, E.G.' 8 1 'Woodgate, R.' 9 1 'Hendrickson, W.A.' 10 # _cell.entry_id 1UMU _cell.length_a 52.800 _cell.length_b 52.800 _cell.length_c 160.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UMU _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man "UMUD'" 12429.735 2 3.4.21.- 'DEL(1-24), M138T, M61 AND M110 SUBSTITUTED BY SELENOMETHIONINE' ;UMUD', RESIDUES 25 - 139 ; ? 2 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDS(MSE)IDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQ LRPTVQLIP(MSE)NSAYSPITISSEDTLDVFGVVIHVVKAATR ; _entity_poly.pdbx_seq_one_letter_code_can ;GFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLRPT VQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAATR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PHE n 1 3 PRO n 1 4 SER n 1 5 PRO n 1 6 ALA n 1 7 ALA n 1 8 ASP n 1 9 TYR n 1 10 VAL n 1 11 GLU n 1 12 GLN n 1 13 ARG n 1 14 ILE n 1 15 ASP n 1 16 LEU n 1 17 ASN n 1 18 GLN n 1 19 LEU n 1 20 LEU n 1 21 ILE n 1 22 GLN n 1 23 HIS n 1 24 PRO n 1 25 SER n 1 26 ALA n 1 27 THR n 1 28 TYR n 1 29 PHE n 1 30 VAL n 1 31 LYS n 1 32 ALA n 1 33 SER n 1 34 GLY n 1 35 ASP n 1 36 SER n 1 37 MSE n 1 38 ILE n 1 39 ASP n 1 40 GLY n 1 41 GLY n 1 42 ILE n 1 43 SER n 1 44 ASP n 1 45 GLY n 1 46 ASP n 1 47 LEU n 1 48 LEU n 1 49 ILE n 1 50 VAL n 1 51 ASP n 1 52 SER n 1 53 ALA n 1 54 ILE n 1 55 THR n 1 56 ALA n 1 57 SER n 1 58 HIS n 1 59 GLY n 1 60 ASP n 1 61 ILE n 1 62 VAL n 1 63 ILE n 1 64 ALA n 1 65 ALA n 1 66 VAL n 1 67 ASP n 1 68 GLY n 1 69 GLU n 1 70 PHE n 1 71 THR n 1 72 VAL n 1 73 LYS n 1 74 LYS n 1 75 LEU n 1 76 GLN n 1 77 LEU n 1 78 ARG n 1 79 PRO n 1 80 THR n 1 81 VAL n 1 82 GLN n 1 83 LEU n 1 84 ILE n 1 85 PRO n 1 86 MSE n 1 87 ASN n 1 88 SER n 1 89 ALA n 1 90 TYR n 1 91 SER n 1 92 PRO n 1 93 ILE n 1 94 THR n 1 95 ILE n 1 96 SER n 1 97 SER n 1 98 GLU n 1 99 ASP n 1 100 THR n 1 101 LEU n 1 102 ASP n 1 103 VAL n 1 104 PHE n 1 105 GLY n 1 106 VAL n 1 107 VAL n 1 108 ILE n 1 109 HIS n 1 110 VAL n 1 111 VAL n 1 112 LYS n 1 113 ALA n 1 114 ALA n 1 115 THR n 1 116 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene 'UMUD, WITH THE FIRST 24 AMINO ACID CODONS REMOVED' _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PALTER _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'T7 PROMOTER' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UMUD_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P04153 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITA SHGDIVIAAVDGEFTVKKLQLRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UMU A 1 ? 116 ? P04153 25 ? 139 ? 25 140 2 1 1UMU B 1 ? 116 ? P04153 25 ? 139 ? 25 140 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1UMU MSE A 37 ? UNP P04153 MET 61 CONFLICT 61 1 1 1UMU MSE A 86 ? UNP P04153 MET 110 CONFLICT 110 2 1 1UMU ALA A 113 ? UNP P04153 ? ? INSERTION 137 3 1 1UMU THR A 115 ? UNP P04153 MET 138 CONFLICT 139 4 2 1UMU MSE B 37 ? UNP P04153 MET 61 CONFLICT 61 5 2 1UMU MSE B 86 ? UNP P04153 MET 110 CONFLICT 110 6 2 1UMU ALA B 113 ? UNP P04153 ? ? INSERTION 137 7 2 1UMU THR B 115 ? UNP P04153 MET 138 CONFLICT 139 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1UMU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 47. _exptl_crystal.description 'THE COMPLETENESS GIVEN ABOVE IS CALCULATED NOT SEPARATING THE BIJVOETS.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;THE CRYSTALS WERE GROWN FROM 600MM LISO4, 20MM MGCL2, 100MM CACODYLATE BUFFER PH 5.8, 5MM DTT AT 20C WITH A PROTEIN CONCENTRATION OF 12-15 MG/ML. THE CRYSTALS WERE FROZEN AT 100K IN PARATONE FOR DATA COLLECTION AT THE NSLS X4A BEAMLINE. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date 1994-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9871 1.0 2 0.9794 1.0 3 0.9792 1.0 4 0.9686 1.0 5 0.9793 1.0 6 0.9791 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9871, 0.9794, 0.9792, 0.9686; 0.9793, 0.9791, 0.9686' # _reflns.entry_id 1UMU _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 3.0 _reflns.number_obs 7500 _reflns.number_all ? _reflns.percent_possible_obs 98. _reflns.pdbx_Rmerge_I_obs 0.0670000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 2. _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.1 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1UMU _refine.ls_number_reflns_obs 7016 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6. _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs 0.2070000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2070000 _refine.ls_R_factor_R_free 0.3030000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6. _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 24.2 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MAD METHOD' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2129 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 2206 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 6. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1UMU _struct.title ;STRUCTURE DETERMINATION OF UMUD' BY MAD PHASING OF THE SELENOMETHIONYL PROTEIN ; _struct.pdbx_descriptor "UMUD'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UMU _struct_keywords.pdbx_keywords 'SOS MUTAGENESIS' _struct_keywords.text 'INDUCED MUTAGENESIS, SOS MUTAGENESIS, DNA REPAIR, BETA-LACTAMASE CLEAVAGE REACTION, LEXA REPRESSOR, LAMBDA CI' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 16 ? LEU A 20 ? LEU A 40 LEU A 44 1 ? 5 HELX_P HELX_P2 3 ILE A 38 ? GLY A 40 ? ILE A 62 GLY A 64 5 ? 3 HELX_P HELX_P3 4 LEU B 16 ? LEU B 20 ? LEU B 40 LEU B 44 1 ? 5 HELX_P HELX_P4 5 PRO B 24 ? ALA B 26 ? PRO B 48 ALA B 50 5 ? 3 HELX_P HELX_P5 6 ILE B 38 ? GLY B 40 ? ILE B 62 GLY B 64 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 37 N ? ? ? 1_555 A SER 36 C ? ? A MSE 61 A SER 60 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 37 C ? ? ? 1_555 A ILE 38 N ? ? A MSE 61 A ILE 62 1_555 ? ? ? ? ? ? ? 1.340 ? covale3 covale ? ? A MSE 86 N ? ? ? 1_555 A PRO 85 C ? ? A MSE 110 A PRO 109 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 86 C ? ? ? 1_555 A ASN 87 N ? ? A MSE 110 A ASN 111 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? B MSE 37 N ? ? ? 1_555 B SER 36 C ? ? B MSE 61 B SER 60 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale ? ? B MSE 37 C ? ? ? 1_555 B ILE 38 N ? ? B MSE 61 B ILE 62 1_555 ? ? ? ? ? ? ? 1.337 ? covale7 covale ? ? B MSE 86 N ? ? ? 1_555 B PRO 85 C ? ? B MSE 110 B PRO 109 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? B MSE 86 C ? ? ? 1_555 B ASN 87 N ? ? B MSE 110 B ASN 111 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 78 A . ? ARG 102 A PRO 79 A ? PRO 103 A 1 0.00 2 ARG 78 B . ? ARG 102 B PRO 79 B ? PRO 103 B 1 -0.24 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 27 ? LYS A 31 ? THR A 51 LYS A 55 A 2 LEU A 47 ? ASP A 51 ? LEU A 71 ASP A 75 A 3 LEU A 101 ? VAL A 111 ? LEU A 125 VAL A 135 A 4 ILE A 61 ? VAL A 66 ? ILE A 85 VAL A 90 A 5 GLU A 69 ? GLN A 76 ? GLU A 93 GLN A 100 A 6 GLN A 82 ? ILE A 84 ? GLN A 106 ILE A 108 B 1 THR B 27 ? LYS B 31 ? THR B 51 LYS B 55 B 2 LEU B 47 ? ASP B 51 ? LEU B 71 ASP B 75 B 3 LEU B 101 ? VAL B 111 ? LEU B 125 VAL B 135 B 4 ILE B 61 ? VAL B 66 ? ILE B 85 VAL B 90 B 5 GLU B 69 ? GLN B 76 ? GLU B 93 GLN B 100 B 6 GLN B 82 ? ILE B 84 ? GLN B 106 ILE B 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 28 ? O TYR A 52 N VAL A 50 ? N VAL A 74 A 2 3 O LEU A 47 ? O LEU A 71 N VAL A 111 ? N VAL A 135 A 3 4 O ASP A 102 ? O ASP A 126 N ALA A 65 ? N ALA A 89 A 4 5 O VAL A 62 ? O VAL A 86 N LYS A 73 ? N LYS A 97 A 5 6 O LYS A 74 ? O LYS A 98 N ILE A 84 ? N ILE A 108 B 1 2 O TYR B 28 ? O TYR B 52 N VAL B 50 ? N VAL B 74 B 2 3 O LEU B 47 ? O LEU B 71 N VAL B 111 ? N VAL B 135 B 3 4 O ASP B 102 ? O ASP B 126 N ALA B 65 ? N ALA B 89 B 4 5 O VAL B 62 ? O VAL B 86 N LYS B 73 ? N LYS B 97 B 5 6 O LYS B 74 ? O LYS B 98 N ILE B 84 ? N ILE B 108 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CAA Unknown ? ? ? ? 2 ;THE CATALYTIC SITE INVOLVES RESIDUES SER 60 AND LYS 97. UMUD GOES THROUGH A SELF CLEAVAGE REACTION TO FORM THE MUTAGENETICALLY ACTIVE FORM OF THE PROTEIN UMUD'. ; CAB Unknown ? ? ? ? 2 ;THE CATALYTIC SITE INVOLVES RESIDUES SER 60 AND LYS 97. UMUD GOES THROUGH A SELF CLEAVAGE REACTION TO FORM THE MUTAGENETICALLY ACTIVE FORM OF THE PROTEIN UMUD'. ; # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAA 2 SER A 36 ? SER A 60 . ? 1_555 ? 2 CAA 2 LYS A 73 ? LYS A 97 . ? 1_555 ? 3 CAB 2 SER B 36 ? SER B 60 . ? 1_555 ? 4 CAB 2 LYS B 73 ? LYS B 97 . ? 1_555 ? # _database_PDB_matrix.entry_id 1UMU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UMU _atom_sites.fract_transf_matrix[1][1] 0.018939 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018939 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006246 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 25 ? ? ? A . n A 1 2 PHE 2 26 ? ? ? A . n A 1 3 PRO 3 27 ? ? ? A . n A 1 4 SER 4 28 ? ? ? A . n A 1 5 PRO 5 29 ? ? ? A . n A 1 6 ALA 6 30 ? ? ? A . n A 1 7 ALA 7 31 ? ? ? A . n A 1 8 ASP 8 32 32 ASP ASP A . n A 1 9 TYR 9 33 33 TYR TYR A . n A 1 10 VAL 10 34 34 VAL VAL A . n A 1 11 GLU 11 35 35 GLU GLU A . n A 1 12 GLN 12 36 36 GLN GLN A . n A 1 13 ARG 13 37 37 ARG ARG A . n A 1 14 ILE 14 38 38 ILE ILE A . n A 1 15 ASP 15 39 39 ASP ASP A . n A 1 16 LEU 16 40 40 LEU LEU A . n A 1 17 ASN 17 41 41 ASN ASN A . n A 1 18 GLN 18 42 42 GLN GLN A . n A 1 19 LEU 19 43 43 LEU LEU A . n A 1 20 LEU 20 44 44 LEU LEU A . n A 1 21 ILE 21 45 45 ILE ILE A . n A 1 22 GLN 22 46 46 GLN GLN A . n A 1 23 HIS 23 47 47 HIS HIS A . n A 1 24 PRO 24 48 48 PRO PRO A . n A 1 25 SER 25 49 49 SER SER A . n A 1 26 ALA 26 50 50 ALA ALA A . n A 1 27 THR 27 51 51 THR THR A . n A 1 28 TYR 28 52 52 TYR TYR A . n A 1 29 PHE 29 53 53 PHE PHE A . n A 1 30 VAL 30 54 54 VAL VAL A . n A 1 31 LYS 31 55 55 LYS LYS A . n A 1 32 ALA 32 56 56 ALA ALA A . n A 1 33 SER 33 57 57 SER SER A . n A 1 34 GLY 34 58 58 GLY GLY A . n A 1 35 ASP 35 59 59 ASP ASP A . n A 1 36 SER 36 60 60 SER SER A . n A 1 37 MSE 37 61 61 MSE MSE A . n A 1 38 ILE 38 62 62 ILE ILE A . n A 1 39 ASP 39 63 63 ASP ASP A . n A 1 40 GLY 40 64 64 GLY GLY A . n A 1 41 GLY 41 65 65 GLY GLY A . n A 1 42 ILE 42 66 66 ILE ILE A . n A 1 43 SER 43 67 67 SER SER A . n A 1 44 ASP 44 68 68 ASP ASP A . n A 1 45 GLY 45 69 69 GLY GLY A . n A 1 46 ASP 46 70 70 ASP ASP A . n A 1 47 LEU 47 71 71 LEU LEU A . n A 1 48 LEU 48 72 72 LEU LEU A . n A 1 49 ILE 49 73 73 ILE ILE A . n A 1 50 VAL 50 74 74 VAL VAL A . n A 1 51 ASP 51 75 75 ASP ASP A . n A 1 52 SER 52 76 76 SER SER A . n A 1 53 ALA 53 77 77 ALA ALA A . n A 1 54 ILE 54 78 78 ILE ILE A . n A 1 55 THR 55 79 79 THR THR A . n A 1 56 ALA 56 80 80 ALA ALA A . n A 1 57 SER 57 81 81 SER SER A . n A 1 58 HIS 58 82 82 HIS HIS A . n A 1 59 GLY 59 83 83 GLY GLY A . n A 1 60 ASP 60 84 84 ASP ASP A . n A 1 61 ILE 61 85 85 ILE ILE A . n A 1 62 VAL 62 86 86 VAL VAL A . n A 1 63 ILE 63 87 87 ILE ILE A . n A 1 64 ALA 64 88 88 ALA ALA A . n A 1 65 ALA 65 89 89 ALA ALA A . n A 1 66 VAL 66 90 90 VAL VAL A . n A 1 67 ASP 67 91 91 ASP ASP A . n A 1 68 GLY 68 92 92 GLY GLY A . n A 1 69 GLU 69 93 93 GLU GLU A . n A 1 70 PHE 70 94 94 PHE PHE A . n A 1 71 THR 71 95 95 THR THR A . n A 1 72 VAL 72 96 96 VAL VAL A . n A 1 73 LYS 73 97 97 LYS LYS A . n A 1 74 LYS 74 98 98 LYS LYS A . n A 1 75 LEU 75 99 99 LEU LEU A . n A 1 76 GLN 76 100 100 GLN GLN A . n A 1 77 LEU 77 101 101 LEU LEU A . n A 1 78 ARG 78 102 102 ARG ARG A . n A 1 79 PRO 79 103 103 PRO PRO A . n A 1 80 THR 80 104 104 THR THR A . n A 1 81 VAL 81 105 105 VAL VAL A . n A 1 82 GLN 82 106 106 GLN GLN A . n A 1 83 LEU 83 107 107 LEU LEU A . n A 1 84 ILE 84 108 108 ILE ILE A . n A 1 85 PRO 85 109 109 PRO PRO A . n A 1 86 MSE 86 110 110 MSE MSE A . n A 1 87 ASN 87 111 111 ASN ASN A . n A 1 88 SER 88 112 112 SER SER A . n A 1 89 ALA 89 113 113 ALA ALA A . n A 1 90 TYR 90 114 114 TYR TYR A . n A 1 91 SER 91 115 115 SER SER A . n A 1 92 PRO 92 116 116 PRO PRO A . n A 1 93 ILE 93 117 117 ILE ILE A . n A 1 94 THR 94 118 118 THR THR A . n A 1 95 ILE 95 119 119 ILE ILE A . n A 1 96 SER 96 120 120 SER SER A . n A 1 97 SER 97 121 121 SER SER A . n A 1 98 GLU 98 122 122 GLU GLU A . n A 1 99 ASP 99 123 123 ASP ASP A . n A 1 100 THR 100 124 124 THR THR A . n A 1 101 LEU 101 125 125 LEU LEU A . n A 1 102 ASP 102 126 126 ASP ASP A . n A 1 103 VAL 103 127 127 VAL VAL A . n A 1 104 PHE 104 128 128 PHE PHE A . n A 1 105 GLY 105 129 129 GLY GLY A . n A 1 106 VAL 106 130 130 VAL VAL A . n A 1 107 VAL 107 131 131 VAL VAL A . n A 1 108 ILE 108 132 132 ILE ILE A . n A 1 109 HIS 109 133 133 HIS HIS A . n A 1 110 VAL 110 134 134 VAL VAL A . n A 1 111 VAL 111 135 135 VAL VAL A . n A 1 112 LYS 112 136 136 LYS LYS A . n A 1 113 ALA 113 137 ? ? ? A . n A 1 114 ALA 114 138 ? ? ? A . n A 1 115 THR 115 139 ? ? ? A . n A 1 116 ARG 116 140 ? ? ? A . n B 1 1 GLY 1 25 ? ? ? B . n B 1 2 PHE 2 26 ? ? ? B . n B 1 3 PRO 3 27 ? ? ? B . n B 1 4 SER 4 28 ? ? ? B . n B 1 5 PRO 5 29 ? ? ? B . n B 1 6 ALA 6 30 ? ? ? B . n B 1 7 ALA 7 31 ? ? ? B . n B 1 8 ASP 8 32 32 ASP ASP B . n B 1 9 TYR 9 33 33 TYR TYR B . n B 1 10 VAL 10 34 34 VAL VAL B . n B 1 11 GLU 11 35 35 GLU GLU B . n B 1 12 GLN 12 36 36 GLN GLN B . n B 1 13 ARG 13 37 37 ARG ARG B . n B 1 14 ILE 14 38 38 ILE ILE B . n B 1 15 ASP 15 39 39 ASP ASP B . n B 1 16 LEU 16 40 40 LEU LEU B . n B 1 17 ASN 17 41 41 ASN ASN B . n B 1 18 GLN 18 42 42 GLN GLN B . n B 1 19 LEU 19 43 43 LEU LEU B . n B 1 20 LEU 20 44 44 LEU LEU B . n B 1 21 ILE 21 45 45 ILE ILE B . n B 1 22 GLN 22 46 46 GLN GLN B . n B 1 23 HIS 23 47 47 HIS HIS B . n B 1 24 PRO 24 48 48 PRO PRO B . n B 1 25 SER 25 49 49 SER SER B . n B 1 26 ALA 26 50 50 ALA ALA B . n B 1 27 THR 27 51 51 THR THR B . n B 1 28 TYR 28 52 52 TYR TYR B . n B 1 29 PHE 29 53 53 PHE PHE B . n B 1 30 VAL 30 54 54 VAL VAL B . n B 1 31 LYS 31 55 55 LYS LYS B . n B 1 32 ALA 32 56 56 ALA ALA B . n B 1 33 SER 33 57 57 SER SER B . n B 1 34 GLY 34 58 58 GLY GLY B . n B 1 35 ASP 35 59 59 ASP ASP B . n B 1 36 SER 36 60 60 SER SER B . n B 1 37 MSE 37 61 61 MSE MSE B . n B 1 38 ILE 38 62 62 ILE ILE B . n B 1 39 ASP 39 63 63 ASP ASP B . n B 1 40 GLY 40 64 64 GLY GLY B . n B 1 41 GLY 41 65 65 GLY GLY B . n B 1 42 ILE 42 66 66 ILE ILE B . n B 1 43 SER 43 67 67 SER SER B . n B 1 44 ASP 44 68 68 ASP ASP B . n B 1 45 GLY 45 69 69 GLY GLY B . n B 1 46 ASP 46 70 70 ASP ASP B . n B 1 47 LEU 47 71 71 LEU LEU B . n B 1 48 LEU 48 72 72 LEU LEU B . n B 1 49 ILE 49 73 73 ILE ILE B . n B 1 50 VAL 50 74 74 VAL VAL B . n B 1 51 ASP 51 75 75 ASP ASP B . n B 1 52 SER 52 76 76 SER SER B . n B 1 53 ALA 53 77 77 ALA ALA B . n B 1 54 ILE 54 78 78 ILE ILE B . n B 1 55 THR 55 79 79 THR THR B . n B 1 56 ALA 56 80 80 ALA ALA B . n B 1 57 SER 57 81 81 SER SER B . n B 1 58 HIS 58 82 82 HIS HIS B . n B 1 59 GLY 59 83 83 GLY GLY B . n B 1 60 ASP 60 84 84 ASP ASP B . n B 1 61 ILE 61 85 85 ILE ILE B . n B 1 62 VAL 62 86 86 VAL VAL B . n B 1 63 ILE 63 87 87 ILE ILE B . n B 1 64 ALA 64 88 88 ALA ALA B . n B 1 65 ALA 65 89 89 ALA ALA B . n B 1 66 VAL 66 90 90 VAL VAL B . n B 1 67 ASP 67 91 91 ASP ASP B . n B 1 68 GLY 68 92 92 GLY GLY B . n B 1 69 GLU 69 93 93 GLU GLU B . n B 1 70 PHE 70 94 94 PHE PHE B . n B 1 71 THR 71 95 95 THR THR B . n B 1 72 VAL 72 96 96 VAL VAL B . n B 1 73 LYS 73 97 97 LYS LYS B . n B 1 74 LYS 74 98 98 LYS LYS B . n B 1 75 LEU 75 99 99 LEU LEU B . n B 1 76 GLN 76 100 100 GLN GLN B . n B 1 77 LEU 77 101 101 LEU LEU B . n B 1 78 ARG 78 102 102 ARG ARG B . n B 1 79 PRO 79 103 103 PRO PRO B . n B 1 80 THR 80 104 104 THR THR B . n B 1 81 VAL 81 105 105 VAL VAL B . n B 1 82 GLN 82 106 106 GLN GLN B . n B 1 83 LEU 83 107 107 LEU LEU B . n B 1 84 ILE 84 108 108 ILE ILE B . n B 1 85 PRO 85 109 109 PRO PRO B . n B 1 86 MSE 86 110 110 MSE MSE B . n B 1 87 ASN 87 111 111 ASN ASN B . n B 1 88 SER 88 112 112 SER SER B . n B 1 89 ALA 89 113 113 ALA ALA B . n B 1 90 TYR 90 114 114 TYR TYR B . n B 1 91 SER 91 115 115 SER SER B . n B 1 92 PRO 92 116 116 PRO PRO B . n B 1 93 ILE 93 117 117 ILE ILE B . n B 1 94 THR 94 118 118 THR THR B . n B 1 95 ILE 95 119 119 ILE ILE B . n B 1 96 SER 96 120 120 SER SER B . n B 1 97 SER 97 121 121 SER SER B . n B 1 98 GLU 98 122 122 GLU GLU B . n B 1 99 ASP 99 123 123 ASP ASP B . n B 1 100 THR 100 124 124 THR THR B . n B 1 101 LEU 101 125 125 LEU LEU B . n B 1 102 ASP 102 126 126 ASP ASP B . n B 1 103 VAL 103 127 127 VAL VAL B . n B 1 104 PHE 104 128 128 PHE PHE B . n B 1 105 GLY 105 129 129 GLY GLY B . n B 1 106 VAL 106 130 130 VAL VAL B . n B 1 107 VAL 107 131 131 VAL VAL B . n B 1 108 ILE 108 132 132 ILE ILE B . n B 1 109 HIS 109 133 133 HIS HIS B . n B 1 110 VAL 110 134 134 VAL VAL B . n B 1 111 VAL 111 135 135 VAL VAL B . n B 1 112 LYS 112 136 136 LYS LYS B . n B 1 113 ALA 113 137 137 ALA ALA B . n B 1 114 ALA 114 138 ? ? ? B . n B 1 115 THR 115 139 ? ? ? B . n B 1 116 ARG 116 140 ? ? ? B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 37 A MSE 61 ? MET SELENOMETHIONINE 2 A MSE 86 A MSE 110 ? MET SELENOMETHIONINE 3 B MSE 37 B MSE 61 ? MET SELENOMETHIONINE 4 B MSE 86 B MSE 110 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-08-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MADSYS phasing . ? 1 X-PLOR 'model building' . ? 2 X-PLOR refinement . ? 3 DENZO 'data reduction' . ? 4 CCP4 'data scaling' 'MODIFIED LOCALLY' ? 5 X-PLOR phasing . ? 6 # _pdbx_entry_details.entry_id 1UMU _pdbx_entry_details.compound_details ;UMUD GOES THROUGH A SELF CLEAVAGE REACTION TO FORM THE MUTAGENETICALLY ACTIVE FORM OF THE PROTEIN UMUD'. UMUD'S CLEAVAGE MECHANISM IS SIMILAR TO THE BETA-LACTAMASE REACTION. THERE IS HOMOLOGY TO C-TERMINAL PORTIONS OF LAMBDA CI, AND E. COLI LEXA REPRESSOR PROTEINS. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 109 ? ? -73.64 -168.76 2 1 MSE A 110 ? ? -150.65 60.68 3 1 ASN A 111 ? ? -166.79 111.34 4 1 PRO A 116 ? ? -58.89 171.65 5 1 ARG B 37 ? ? -33.79 134.62 6 1 HIS B 47 ? ? -118.38 76.93 7 1 ASN B 111 ? ? -168.28 114.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 32 ? CG ? A ASP 8 CG 2 1 Y 1 A ASP 32 ? OD1 ? A ASP 8 OD1 3 1 Y 1 A ASP 32 ? OD2 ? A ASP 8 OD2 4 1 Y 1 A GLU 35 ? CG ? A GLU 11 CG 5 1 Y 1 A GLU 35 ? CD ? A GLU 11 CD 6 1 Y 1 A GLU 35 ? OE1 ? A GLU 11 OE1 7 1 Y 1 A GLU 35 ? OE2 ? A GLU 11 OE2 8 1 Y 1 A GLN 36 ? CD ? A GLN 12 CD 9 1 Y 1 A GLN 36 ? OE1 ? A GLN 12 OE1 10 1 Y 1 A GLN 36 ? NE2 ? A GLN 12 NE2 11 1 Y 1 A ARG 37 ? CG ? A ARG 13 CG 12 1 Y 1 A ARG 37 ? CD ? A ARG 13 CD 13 1 Y 1 A ARG 37 ? NE ? A ARG 13 NE 14 1 Y 1 A ARG 37 ? CZ ? A ARG 13 CZ 15 1 Y 1 A ARG 37 ? NH1 ? A ARG 13 NH1 16 1 Y 1 A ARG 37 ? NH2 ? A ARG 13 NH2 17 1 Y 1 A GLN 42 ? CG ? A GLN 18 CG 18 1 Y 1 A GLN 42 ? CD ? A GLN 18 CD 19 1 Y 1 A GLN 42 ? OE1 ? A GLN 18 OE1 20 1 Y 1 A GLN 42 ? NE2 ? A GLN 18 NE2 21 1 Y 1 B ASP 32 ? CG ? B ASP 8 CG 22 1 Y 1 B ASP 32 ? OD1 ? B ASP 8 OD1 23 1 Y 1 B ASP 32 ? OD2 ? B ASP 8 OD2 24 1 Y 1 B GLU 35 ? CD ? B GLU 11 CD 25 1 Y 1 B GLU 35 ? OE1 ? B GLU 11 OE1 26 1 Y 1 B GLU 35 ? OE2 ? B GLU 11 OE2 27 1 Y 1 B GLN 36 ? CG ? B GLN 12 CG 28 1 Y 1 B GLN 36 ? CD ? B GLN 12 CD 29 1 Y 1 B GLN 36 ? OE1 ? B GLN 12 OE1 30 1 Y 1 B GLN 36 ? NE2 ? B GLN 12 NE2 31 1 Y 1 B GLN 42 ? CG ? B GLN 18 CG 32 1 Y 1 B GLN 42 ? CD ? B GLN 18 CD 33 1 Y 1 B GLN 42 ? OE1 ? B GLN 18 OE1 34 1 Y 1 B GLN 42 ? NE2 ? B GLN 18 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 25 ? A GLY 1 2 1 Y 1 A PHE 26 ? A PHE 2 3 1 Y 1 A PRO 27 ? A PRO 3 4 1 Y 1 A SER 28 ? A SER 4 5 1 Y 1 A PRO 29 ? A PRO 5 6 1 Y 1 A ALA 30 ? A ALA 6 7 1 Y 1 A ALA 31 ? A ALA 7 8 1 Y 1 A ALA 137 ? A ALA 113 9 1 Y 1 A ALA 138 ? A ALA 114 10 1 Y 1 A THR 139 ? A THR 115 11 1 Y 1 A ARG 140 ? A ARG 116 12 1 Y 1 B GLY 25 ? B GLY 1 13 1 Y 1 B PHE 26 ? B PHE 2 14 1 Y 1 B PRO 27 ? B PRO 3 15 1 Y 1 B SER 28 ? B SER 4 16 1 Y 1 B PRO 29 ? B PRO 5 17 1 Y 1 B ALA 30 ? B ALA 6 18 1 Y 1 B ALA 31 ? B ALA 7 19 1 Y 1 B ALA 138 ? B ALA 114 20 1 Y 1 B THR 139 ? B THR 115 21 1 Y 1 B ARG 140 ? B ARG 116 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 141 5 HOH HOH A . C 2 HOH 2 142 6 HOH HOH A . C 2 HOH 3 143 8 HOH HOH A . C 2 HOH 4 144 9 HOH HOH A . C 2 HOH 5 145 10 HOH HOH A . C 2 HOH 6 146 11 HOH HOH A . C 2 HOH 7 147 12 HOH HOH A . C 2 HOH 8 148 13 HOH HOH A . C 2 HOH 9 149 14 HOH HOH A . C 2 HOH 10 150 15 HOH HOH A . C 2 HOH 11 151 17 HOH HOH A . C 2 HOH 12 152 19 HOH HOH A . C 2 HOH 13 153 20 HOH HOH A . C 2 HOH 14 154 23 HOH HOH A . C 2 HOH 15 155 25 HOH HOH A . C 2 HOH 16 156 26 HOH HOH A . C 2 HOH 17 157 27 HOH HOH A . C 2 HOH 18 158 28 HOH HOH A . C 2 HOH 19 159 29 HOH HOH A . C 2 HOH 20 160 39 HOH HOH A . C 2 HOH 21 161 40 HOH HOH A . C 2 HOH 22 162 42 HOH HOH A . C 2 HOH 23 163 45 HOH HOH A . C 2 HOH 24 164 49 HOH HOH A . C 2 HOH 25 165 52 HOH HOH A . C 2 HOH 26 166 53 HOH HOH A . C 2 HOH 27 167 54 HOH HOH A . C 2 HOH 28 168 55 HOH HOH A . C 2 HOH 29 169 56 HOH HOH A . C 2 HOH 30 170 57 HOH HOH A . C 2 HOH 31 171 58 HOH HOH A . C 2 HOH 32 172 59 HOH HOH A . C 2 HOH 33 173 60 HOH HOH A . C 2 HOH 34 174 61 HOH HOH A . C 2 HOH 35 175 67 HOH HOH A . C 2 HOH 36 176 68 HOH HOH A . C 2 HOH 37 177 69 HOH HOH A . C 2 HOH 38 178 70 HOH HOH A . C 2 HOH 39 179 74 HOH HOH A . D 2 HOH 1 141 1 HOH HOH B . D 2 HOH 2 142 2 HOH HOH B . D 2 HOH 3 143 3 HOH HOH B . D 2 HOH 4 144 4 HOH HOH B . D 2 HOH 5 145 7 HOH HOH B . D 2 HOH 6 146 16 HOH HOH B . D 2 HOH 7 147 18 HOH HOH B . D 2 HOH 8 148 21 HOH HOH B . D 2 HOH 9 149 22 HOH HOH B . D 2 HOH 10 150 24 HOH HOH B . D 2 HOH 11 151 30 HOH HOH B . D 2 HOH 12 152 31 HOH HOH B . D 2 HOH 13 153 32 HOH HOH B . D 2 HOH 14 154 33 HOH HOH B . D 2 HOH 15 155 34 HOH HOH B . D 2 HOH 16 156 35 HOH HOH B . D 2 HOH 17 157 36 HOH HOH B . D 2 HOH 18 158 37 HOH HOH B . D 2 HOH 19 159 38 HOH HOH B . D 2 HOH 20 160 41 HOH HOH B . D 2 HOH 21 161 43 HOH HOH B . D 2 HOH 22 162 44 HOH HOH B . D 2 HOH 23 163 46 HOH HOH B . D 2 HOH 24 164 47 HOH HOH B . D 2 HOH 25 165 48 HOH HOH B . D 2 HOH 26 166 50 HOH HOH B . D 2 HOH 27 167 51 HOH HOH B . D 2 HOH 28 168 62 HOH HOH B . D 2 HOH 29 169 63 HOH HOH B . D 2 HOH 30 170 64 HOH HOH B . D 2 HOH 31 171 65 HOH HOH B . D 2 HOH 32 172 66 HOH HOH B . D 2 HOH 33 173 71 HOH HOH B . D 2 HOH 34 174 72 HOH HOH B . D 2 HOH 35 175 73 HOH HOH B . D 2 HOH 36 176 75 HOH HOH B . D 2 HOH 37 177 76 HOH HOH B . D 2 HOH 38 178 77 HOH HOH B . #