data_1UNJ
#
_entry.id 1UNJ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1UNJ pdb_00001unj 10.2210/pdb1unj/pdb
PDBE EBI-13477 ? ?
WWPDB D_1290013477 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2004-12-16
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2011-07-20
4 'Structure model' 1 3 2012-11-30
5 'Structure model' 1 4 2019-03-06
6 'Structure model' 1 5 2019-05-08
7 'Structure model' 1 6 2019-05-22
8 'Structure model' 1 7 2019-07-24
9 'Structure model' 1 8 2019-10-23
10 'Structure model' 2 0 2023-11-15
11 'Structure model' 3 0 2024-07-10
12 'Structure model' 3 1 2024-10-16
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Atomic model'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
4 2 'Structure model' 'Structure summary'
5 2 'Structure model' 'Version format compliance'
6 3 'Structure model' Other
7 3 'Structure model' 'Structure summary'
8 4 'Structure model' Other
9 5 'Structure model' Advisory
10 5 'Structure model' 'Data collection'
11 5 'Structure model' 'Derived calculations'
12 5 'Structure model' 'Experimental preparation'
13 5 'Structure model' Other
14 6 'Structure model' 'Data collection'
15 6 'Structure model' 'Experimental preparation'
16 7 'Structure model' 'Data collection'
17 7 'Structure model' 'Refinement description'
18 8 'Structure model' 'Data collection'
19 9 'Structure model' 'Data collection'
20 9 'Structure model' 'Database references'
21 9 'Structure model' Other
22 10 'Structure model' 'Atomic model'
23 10 'Structure model' 'Data collection'
24 10 'Structure model' 'Database references'
25 10 'Structure model' 'Derived calculations'
26 11 'Structure model' 'Data collection'
27 11 'Structure model' 'Derived calculations'
28 11 'Structure model' 'Non-polymer description'
29 11 'Structure model' 'Source and taxonomy'
30 11 'Structure model' 'Structure summary'
31 12 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' exptl_crystal_grow
2 5 'Structure model' pdbx_database_proc
3 5 'Structure model' pdbx_database_status
4 5 'Structure model' pdbx_seq_map_depositor_info
5 5 'Structure model' pdbx_unobs_or_zero_occ_atoms
6 5 'Structure model' pdbx_validate_polymer_linkage
7 5 'Structure model' struct_conn
8 6 'Structure model' database_PDB_rev
9 6 'Structure model' database_PDB_rev_record
10 6 'Structure model' exptl_crystal_grow
11 6 'Structure model' pdbx_seq_map_depositor_info
12 7 'Structure model' pdbx_seq_map_depositor_info
13 7 'Structure model' refine
14 8 'Structure model' diffrn_source
15 9 'Structure model' pdbx_database_status
16 9 'Structure model' struct_ref_seq_dif
17 10 'Structure model' atom_site
18 10 'Structure model' chem_comp_atom
19 10 'Structure model' chem_comp_bond
20 10 'Structure model' database_2
21 10 'Structure model' struct_conn
22 11 'Structure model' chem_comp
23 11 'Structure model' chem_comp_atom
24 11 'Structure model' chem_comp_bond
25 11 'Structure model' entity
26 11 'Structure model' pdbx_entity_src_syn
27 11 'Structure model' struct_conn
28 12 'Structure model' pdbx_entry_details
29 12 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_exptl_crystal_grow.temp'
2 5 'Structure model' '_pdbx_database_status.recvd_author_approval'
3 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod'
4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
5 6 'Structure model' '_exptl_crystal_grow.method'
6 6 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod'
7 7 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod'
8 7 'Structure model' '_refine.pdbx_ls_cross_valid_method'
9 8 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
10 9 'Structure model' '_pdbx_database_status.status_code_sf'
11 9 'Structure model' '_struct_ref_seq_dif.details'
12 10 'Structure model' '_atom_site.auth_atom_id'
13 10 'Structure model' '_atom_site.label_atom_id'
14 10 'Structure model' '_database_2.pdbx_DOI'
15 10 'Structure model' '_database_2.pdbx_database_accession'
16 10 'Structure model' '_struct_conn.pdbx_dist_value'
17 10 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
18 10 'Structure model' '_struct_conn.ptnr1_label_atom_id'
19 10 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
20 10 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
21 10 'Structure model' '_struct_conn.ptnr2_label_atom_id'
22 10 'Structure model' '_struct_conn.ptnr2_label_comp_id'
23 10 'Structure model' '_struct_conn.ptnr2_label_seq_id'
24 11 'Structure model' '_chem_comp.formula'
25 11 'Structure model' '_chem_comp.formula_weight'
26 11 'Structure model' '_entity.formula_weight'
27 11 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
28 12 'Structure model' '_pdbx_entry_details.has_protein_modification'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1UNJ
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2003-09-10
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3'
PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2'
PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA'
PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2'
PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D'
PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2'
PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2'
PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2'
PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2'
PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)'
PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2'
PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2'
PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2'
PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2'
PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Alexopoulos, E.C.' 1
'Klement, R.' 2
'Jares-Erijman, E.A.' 3
'Uson, I.' 4
'Jovin, T.M.' 5
'Sheldrick, G.M.' 6
#
_citation.id primary
_citation.title
'Crystal and Solution Structures of 7-Amino-Actinomycin D Complexes with D(Ttagbrut), D(Ttagtt) and D(Tttagttt)'
_citation.journal_abbrev 'Acta Crystallogr.,Sect.D'
_citation.journal_volume 61
_citation.page_first 407
_citation.page_last ?
_citation.year 2005
_citation.journal_id_ASTM ABCRE6
_citation.country DK
_citation.journal_id_ISSN 0907-4449
_citation.journal_id_CSD 0766
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15805595
_citation.pdbx_database_id_DOI 10.1107/S090744490500082X
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Alexopoulos, E.C.' 1 ?
primary 'Jares-Erijman, E.A.' 2 ?
primary 'Jovin, T.M.' 3 ?
primary 'Klement, R.' 4 ?
primary 'Machinek, R.' 5 ?
primary 'Sheldrick, G.M.' 6 ?
primary 'Uson, I.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*TP*TP*AP*GP*BRU*TP)-3'" 1879.096 16 ? ? ? ?
2 polymer syn '7-AMINO-ACTINOMYCIN D' 1306.461 8 ? ? ? ?
3 water nat water 18.015 14 ? ? ? ?
#
_entity_name_com.entity_id 2
_entity_name_com.name DACTINOMYCIN
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no yes '(DT)(DT)(DA)(DG)(BRU)(DT)' TTAGUT A,B,C,D,G,H,I,J,M,N,O,P,S,T,U,V ?
2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PX1)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV E,F,K,L,Q,R,W,X ?
#
_pdbx_entity_nonpoly.entity_id 3
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DT n
1 3 DA n
1 4 DG n
1 5 BRU n
1 6 DT n
2 1 THR n
2 2 DVA n
2 3 PRO n
2 4 SAR n
2 5 MVA n
2 6 PX1 n
2 7 THR n
2 8 DVA n
2 9 PRO n
2 10 SAR n
2 11 MVA n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample ? ? 'synthetic construct' ? 32630 ?
2 1 sample ? ? 'STREPTOMYCES ANTIBIOTICUS' ? 1890 ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE"
? 'C9 H12 Br N2 O8 P' 387.078
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"
? 'C10 H14 N5 O6 P' 331.222
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"
? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"
? 'C10 H15 N2 O8 P' 322.208
DVA 'D-peptide linking' . D-VALINE
? 'C5 H11 N O2' 117.146
HOH non-polymer . WATER
? 'H2 O' 18.015
MVA 'L-peptide linking' n N-METHYLVALINE
? 'C6 H13 N O2' 131.173
PRO 'L-peptide linking' y PROLINE
? 'C5 H9 N O2' 115.130
PX1 non-polymer . '(1Z)-7-AMINO-1-(HYDROXYMETHYLENE)-2-IMINO-4,6-DIMETHYL-3-OXO-2,3-DIHYDRO-1H-PHENOXAZINE-9-CARBALDEHYDE'
? 'C16 H13 N3 O6' 343.291
PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
PHENOXAZINE 'C16 H12 N2 O6' 328.276
SAR 'peptide linking' n SARCOSINE
? 'C3 H7 N O2' 89.093
THR 'L-peptide linking' y THREONINE
? 'C4 H9 N O3' 119.119
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 ? ? ? A . n
A 1 2 DT 2 2 2 DT DT A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DG 4 4 4 DG DG A . n
A 1 5 BRU 5 5 5 BRU BRU A . n
A 1 6 DT 6 6 6 DT DT A . n
B 1 1 DT 1 1 ? ? ? B . n
B 1 2 DT 2 2 ? ? ? B . n
B 1 3 DA 3 3 3 DA DA B . n
B 1 4 DG 4 4 4 DG DG B . n
B 1 5 BRU 5 5 5 BRU BRU B . n
B 1 6 DT 6 6 6 DT DT B . n
C 1 1 DT 1 1 ? ? ? C . n
C 1 2 DT 2 2 2 DT DT C . n
C 1 3 DA 3 3 3 DA DA C . n
C 1 4 DG 4 4 4 DG DG C . n
C 1 5 BRU 5 5 5 BRU BRU C . n
C 1 6 DT 6 6 6 DT DT C . n
D 1 1 DT 1 1 ? ? ? D . n
D 1 2 DT 2 2 2 DT DT D . n
D 1 3 DA 3 3 3 DA DA D . n
D 1 4 DG 4 4 4 DG DG D . n
D 1 5 BRU 5 5 5 BRU BRU D . n
D 1 6 DT 6 6 6 DT DT D . n
E 2 1 THR 1 1 1 THR THR E . n
E 2 2 DVA 2 2 2 DVA DVA E . n
E 2 3 PRO 3 3 3 PRO PRO E . n
E 2 4 SAR 4 4 4 SAR SAR E . n
E 2 5 MVA 5 5 5 MVA MVA E . n
E 2 6 PX1 6 6 6 PX1 PX1 E . n
E 2 7 THR 7 7 7 THR THR E . n
E 2 8 DVA 8 8 8 DVA DVA E . n
E 2 9 PRO 9 9 9 PRO PRO E . n
E 2 10 SAR 10 10 10 SAR SAR E . n
E 2 11 MVA 11 11 11 MVA MVA E . n
F 2 1 THR 1 1 1 THR THR F . n
F 2 2 DVA 2 2 2 DVA DVA F . n
F 2 3 PRO 3 3 3 PRO PRO F . n
F 2 4 SAR 4 4 4 SAR SAR F . n
F 2 5 MVA 5 5 5 MVA MVA F . n
F 2 6 PX1 6 6 6 PX1 PX1 F . n
F 2 7 THR 7 7 7 THR THR F . n
F 2 8 DVA 8 8 8 DVA DVA F . n
F 2 9 PRO 9 9 9 PRO PRO F . n
F 2 10 SAR 10 10 10 SAR SAR F . n
F 2 11 MVA 11 11 11 MVA MVA F . n
G 1 1 DT 1 1 ? ? ? G . n
G 1 2 DT 2 2 2 DT DT G . n
G 1 3 DA 3 3 3 DA DA G . n
G 1 4 DG 4 4 4 DG DG G . n
G 1 5 BRU 5 5 5 BRU BRU G . n
G 1 6 DT 6 6 6 DT DT G . n
H 1 1 DT 1 1 ? ? ? H . n
H 1 2 DT 2 2 ? ? ? H . n
H 1 3 DA 3 3 3 DA DA H . n
H 1 4 DG 4 4 4 DG DG H . n
H 1 5 BRU 5 5 5 BRU BRU H . n
H 1 6 DT 6 6 6 DT DT H . n
I 1 1 DT 1 1 ? ? ? I . n
I 1 2 DT 2 2 2 DT DT I . n
I 1 3 DA 3 3 3 DA DA I . n
I 1 4 DG 4 4 4 DG DG I . n
I 1 5 BRU 5 5 5 BRU BRU I . n
I 1 6 DT 6 6 6 DT DT I . n
J 1 1 DT 1 1 ? ? ? J . n
J 1 2 DT 2 2 2 DT DT J . n
J 1 3 DA 3 3 3 DA DA J . n
J 1 4 DG 4 4 4 DG DG J . n
J 1 5 BRU 5 5 5 BRU BRU J . n
J 1 6 DT 6 6 6 DT DT J . n
K 2 1 THR 1 1 1 THR THR K . n
K 2 2 DVA 2 2 2 DVA DVA K . n
K 2 3 PRO 3 3 3 PRO PRO K . n
K 2 4 SAR 4 4 4 SAR SAR K . n
K 2 5 MVA 5 5 5 MVA MVA K . n
K 2 6 PX1 6 6 6 PX1 PX1 K . n
K 2 7 THR 7 7 7 THR THR K . n
K 2 8 DVA 8 8 8 DVA DVA K . n
K 2 9 PRO 9 9 9 PRO PRO K . n
K 2 10 SAR 10 10 10 SAR SAR K . n
K 2 11 MVA 11 11 11 MVA MVA K . n
L 2 1 THR 1 1 1 THR THR L . n
L 2 2 DVA 2 2 2 DVA DVA L . n
L 2 3 PRO 3 3 3 PRO PRO L . n
L 2 4 SAR 4 4 4 SAR SAR L . n
L 2 5 MVA 5 5 5 MVA MVA L . n
L 2 6 PX1 6 6 6 PX1 PX1 L . n
L 2 7 THR 7 7 7 THR THR L . n
L 2 8 DVA 8 8 8 DVA DVA L . n
L 2 9 PRO 9 9 9 PRO PRO L . n
L 2 10 SAR 10 10 10 SAR SAR L . n
L 2 11 MVA 11 11 11 MVA MVA L . n
M 1 1 DT 1 1 ? ? ? M . n
M 1 2 DT 2 2 2 DT DT M . n
M 1 3 DA 3 3 3 DA DA M . n
M 1 4 DG 4 4 4 DG DG M . n
M 1 5 BRU 5 5 5 BRU BRU M . n
M 1 6 DT 6 6 6 DT DT M . n
N 1 1 DT 1 1 ? ? ? N . n
N 1 2 DT 2 2 2 DT DT N . n
N 1 3 DA 3 3 3 DA DA N . n
N 1 4 DG 4 4 4 DG DG N . n
N 1 5 BRU 5 5 5 BRU BRU N . n
N 1 6 DT 6 6 6 DT DT N . n
O 1 1 DT 1 1 ? ? ? O . n
O 1 2 DT 2 2 2 DT DT O . n
O 1 3 DA 3 3 3 DA DA O . n
O 1 4 DG 4 4 4 DG DG O . n
O 1 5 BRU 5 5 5 BRU BRU O . n
O 1 6 DT 6 6 6 DT DT O . n
P 1 1 DT 1 1 ? ? ? P . n
P 1 2 DT 2 2 2 DT DT P . n
P 1 3 DA 3 3 3 DA DA P . n
P 1 4 DG 4 4 4 DG DG P . n
P 1 5 BRU 5 5 5 BRU BRU P . n
P 1 6 DT 6 6 6 DT DT P . n
Q 2 1 THR 1 1 1 THR THR Q . n
Q 2 2 DVA 2 2 2 DVA DVA Q . n
Q 2 3 PRO 3 3 3 PRO PRO Q . n
Q 2 4 SAR 4 4 4 SAR SAR Q . n
Q 2 5 MVA 5 5 5 MVA MVA Q . n
Q 2 6 PX1 6 6 6 PX1 PX1 Q . n
Q 2 7 THR 7 7 7 THR THR Q . n
Q 2 8 DVA 8 8 8 DVA DVA Q . n
Q 2 9 PRO 9 9 9 PRO PRO Q . n
Q 2 10 SAR 10 10 10 SAR SAR Q . n
Q 2 11 MVA 11 11 11 MVA MVA Q . n
R 2 1 THR 1 1 1 THR THR R . n
R 2 2 DVA 2 2 2 DVA DVA R . n
R 2 3 PRO 3 3 3 PRO PRO R . n
R 2 4 SAR 4 4 4 SAR SAR R . n
R 2 5 MVA 5 5 5 MVA MVA R . n
R 2 6 PX1 6 6 6 PX1 PX1 R . n
R 2 7 THR 7 7 7 THR THR R . n
R 2 8 DVA 8 8 8 DVA DVA R . n
R 2 9 PRO 9 9 9 PRO PRO R . n
R 2 10 SAR 10 10 10 SAR SAR R . n
R 2 11 MVA 11 11 11 MVA MVA R . n
S 1 1 DT 1 1 ? ? ? S . n
S 1 2 DT 2 2 2 DT DT S . n
S 1 3 DA 3 3 3 DA DA S . n
S 1 4 DG 4 4 4 DG DG S . n
S 1 5 BRU 5 5 5 BRU BRU S . n
S 1 6 DT 6 6 6 DT DT S . n
T 1 1 DT 1 1 ? ? ? T . n
T 1 2 DT 2 2 2 DT DT T . n
T 1 3 DA 3 3 3 DA DA T . n
T 1 4 DG 4 4 4 DG DG T . n
T 1 5 BRU 5 5 5 BRU BRU T . n
T 1 6 DT 6 6 6 DT DT T . n
U 1 1 DT 1 1 ? ? ? U . n
U 1 2 DT 2 2 2 DT DT U . n
U 1 3 DA 3 3 3 DA DA U . n
U 1 4 DG 4 4 4 DG DG U . n
U 1 5 BRU 5 5 5 BRU BRU U . n
U 1 6 DT 6 6 6 DT DT U . n
V 1 1 DT 1 1 1 DT DT V . n
V 1 2 DT 2 2 2 DT DT V . n
V 1 3 DA 3 3 3 DA DA V . n
V 1 4 DG 4 4 4 DG DG V . n
V 1 5 BRU 5 5 5 BRU BRU V . n
V 1 6 DT 6 6 6 DT DT V . n
W 2 1 THR 1 1 1 THR THR W . n
W 2 2 DVA 2 2 2 DVA DVA W . n
W 2 3 PRO 3 3 3 PRO PRO W . n
W 2 4 SAR 4 4 4 SAR SAR W . n
W 2 5 MVA 5 5 5 MVA MVA W . n
W 2 6 PX1 6 6 6 PX1 PX1 W . n
W 2 7 THR 7 7 7 THR THR W . n
W 2 8 DVA 8 8 8 DVA DVA W . n
W 2 9 PRO 9 9 9 PRO PRO W . n
W 2 10 SAR 10 10 10 SAR SAR W . n
W 2 11 MVA 11 11 11 MVA MVA W . n
X 2 1 THR 1 1 1 THR THR X . n
X 2 2 DVA 2 2 2 DVA DVA X . n
X 2 3 PRO 3 3 3 PRO PRO X . n
X 2 4 SAR 4 4 4 SAR SAR X . n
X 2 5 MVA 5 5 5 MVA MVA X . n
X 2 6 PX1 6 6 6 PX1 PX1 X . n
X 2 7 THR 7 7 7 THR THR X . n
X 2 8 DVA 8 8 8 DVA DVA X . n
X 2 9 PRO 9 9 9 PRO PRO X . n
X 2 10 SAR 10 10 10 SAR SAR X . n
X 2 11 MVA 11 11 11 MVA MVA X . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 3 HOH 1 2001 2001 HOH HOH C .
Z 3 HOH 1 2001 2001 HOH HOH G .
AA 3 HOH 1 2001 2001 HOH HOH I .
BA 3 HOH 1 2001 2001 HOH HOH K .
CA 3 HOH 1 2001 2001 HOH HOH L .
CA 3 HOH 2 2002 2002 HOH HOH L .
DA 3 HOH 1 2001 2001 HOH HOH M .
DA 3 HOH 2 2002 2002 HOH HOH M .
EA 3 HOH 1 2001 2001 HOH HOH N .
FA 3 HOH 1 2001 2001 HOH HOH O .
GA 3 HOH 1 2001 2001 HOH HOH Q .
HA 3 HOH 1 2001 2001 HOH HOH R .
IA 3 HOH 1 2001 2001 HOH HOH S .
JA 3 HOH 1 2001 2001 HOH HOH W .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 B DT 6 ? "O3'" ? B DT 6 "O3'"
2 1 Y 1 C DT 6 ? "C5'" ? C DT 6 "C5'"
3 1 Y 1 C DT 6 ? "C4'" ? C DT 6 "C4'"
4 1 Y 1 C DT 6 ? "O4'" ? C DT 6 "O4'"
5 1 Y 1 C DT 6 ? "C3'" ? C DT 6 "C3'"
6 1 Y 1 C DT 6 ? "O3'" ? C DT 6 "O3'"
7 1 Y 1 C DT 6 ? "C2'" ? C DT 6 "C2'"
8 1 Y 1 C DT 6 ? "C1'" ? C DT 6 "C1'"
9 1 Y 1 C DT 6 ? N1 ? C DT 6 N1
10 1 Y 1 C DT 6 ? C2 ? C DT 6 C2
11 1 Y 1 C DT 6 ? O2 ? C DT 6 O2
12 1 Y 1 C DT 6 ? N3 ? C DT 6 N3
13 1 Y 1 C DT 6 ? C4 ? C DT 6 C4
14 1 Y 1 C DT 6 ? O4 ? C DT 6 O4
15 1 Y 1 C DT 6 ? C5 ? C DT 6 C5
16 1 Y 1 C DT 6 ? C7 ? C DT 6 C7
17 1 Y 1 C DT 6 ? C6 ? C DT 6 C6
18 1 Y 1 G DT 2 ? P ? G DT 2 P
19 1 Y 1 G DT 2 ? OP1 ? G DT 2 OP1
20 1 Y 1 G DT 2 ? OP2 ? G DT 2 OP2
21 1 Y 1 G DT 2 ? "O5'" ? G DT 2 "O5'"
22 1 Y 1 H DT 6 ? "O3'" ? H DT 6 "O3'"
23 1 Y 1 J DT 2 ? P ? J DT 2 P
24 1 Y 1 J DT 2 ? OP1 ? J DT 2 OP1
25 1 Y 1 J DT 2 ? OP2 ? J DT 2 OP2
26 1 Y 1 J DT 2 ? "O5'" ? J DT 2 "O5'"
27 1 Y 1 N DT 2 ? P ? N DT 2 P
28 1 Y 1 N DT 2 ? OP1 ? N DT 2 OP1
29 1 Y 1 N DT 2 ? OP2 ? N DT 2 OP2
30 1 Y 1 N DT 2 ? "O5'" ? N DT 2 "O5'"
31 1 Y 1 N DT 2 ? "C5'" ? N DT 2 "C5'"
32 1 Y 1 N DT 2 ? "C4'" ? N DT 2 "C4'"
33 1 Y 1 N DT 2 ? "O4'" ? N DT 2 "O4'"
34 1 Y 1 N DT 2 ? "C3'" ? N DT 2 "C3'"
35 1 Y 1 N DT 2 ? "C2'" ? N DT 2 "C2'"
36 1 Y 1 N DT 2 ? "C1'" ? N DT 2 "C1'"
37 1 Y 1 N DT 2 ? N1 ? N DT 2 N1
38 1 Y 1 N DT 2 ? C2 ? N DT 2 C2
39 1 Y 1 N DT 2 ? O2 ? N DT 2 O2
40 1 Y 1 N DT 2 ? N3 ? N DT 2 N3
41 1 Y 1 N DT 2 ? C4 ? N DT 2 C4
42 1 Y 1 N DT 2 ? O4 ? N DT 2 O4
43 1 Y 1 N DT 2 ? C5 ? N DT 2 C5
44 1 Y 1 N DT 2 ? C7 ? N DT 2 C7
45 1 Y 1 N DT 2 ? C6 ? N DT 2 C6
46 1 Y 1 T DT 2 ? P ? T DT 2 P
47 1 Y 1 T DT 2 ? OP1 ? T DT 2 OP1
48 1 Y 1 T DT 2 ? OP2 ? T DT 2 OP2
49 1 Y 1 T DT 2 ? "O5'" ? T DT 2 "O5'"
50 1 Y 1 T DT 2 ? "C5'" ? T DT 2 "C5'"
51 1 Y 1 T DT 2 ? "C4'" ? T DT 2 "C4'"
52 1 Y 1 T DT 2 ? "O4'" ? T DT 2 "O4'"
53 1 Y 1 T DT 2 ? "C3'" ? T DT 2 "C3'"
54 1 Y 1 T DT 2 ? "C2'" ? T DT 2 "C2'"
55 1 Y 1 T DT 2 ? "C1'" ? T DT 2 "C1'"
56 1 Y 1 T DT 2 ? N1 ? T DT 2 N1
57 1 Y 1 T DT 2 ? C2 ? T DT 2 C2
58 1 Y 1 T DT 2 ? O2 ? T DT 2 O2
59 1 Y 1 T DT 2 ? N3 ? T DT 2 N3
60 1 Y 1 T DT 2 ? C4 ? T DT 2 C4
61 1 Y 1 T DT 2 ? O4 ? T DT 2 O4
62 1 Y 1 T DT 2 ? C5 ? T DT 2 C5
63 1 Y 1 T DT 2 ? C7 ? T DT 2 C7
64 1 Y 1 T DT 2 ? C6 ? T DT 2 C6
65 1 Y 1 T DT 6 ? "O3'" ? T DT 6 "O3'"
66 1 Y 1 U DT 2 ? P ? U DT 2 P
67 1 Y 1 U DT 2 ? OP1 ? U DT 2 OP1
68 1 Y 1 U DT 2 ? OP2 ? U DT 2 OP2
69 1 Y 1 U DT 2 ? "O5'" ? U DT 2 "O5'"
70 1 Y 1 V DT 1 ? "O5'" ? V DT 1 "O5'"
71 1 Y 1 V DT 1 ? "C5'" ? V DT 1 "C5'"
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SHELXL-97 refinement . ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
SHELXD phasing . ? 4
#
_cell.entry_id 1UNJ
_cell.length_a 71.222
_cell.length_b 71.222
_cell.length_c 108.400
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 96
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1UNJ
_symmetry.space_group_name_H-M 'P 32 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 154
#
_exptl.entry_id 1UNJ
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.97
_exptl_crystal.density_percent_sol 40
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.60
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details 'NA.CITRATE PH 5.6, NA.ACETATE,(NH4)2SO4,HANGING DROP,T 293K'
#
_diffrn.id 1
_diffrn.ambient_temp 100.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector ?
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 2002-07-15
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
loop_
_diffrn_radiation_wavelength.id
_diffrn_radiation_wavelength.wavelength
_diffrn_radiation_wavelength.wt
1 0.9050 1.0
2 0.9196 1.0
3 0.9204 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline BW7A
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9050,0.9196,0.9204
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 1UNJ
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 20.000
_reflns.d_resolution_high 2.500
_reflns.number_obs 11527
_reflns.number_all ?
_reflns.percent_possible_obs 99.0
_reflns.pdbx_Rmerge_I_obs 0.08000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 6.5700
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 10.150
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 2.50
_reflns_shell.d_res_low 2.60
_reflns_shell.percent_possible_all 93.3
_reflns_shell.Rmerge_I_obs 0.48000
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 5.270
_reflns_shell.pdbx_redundancy 9.37
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 1UNJ
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all 11527
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 20
_refine.ls_d_res_high 2.5
_refine.ls_percent_reflns_obs 99
_refine.ls_R_factor_obs 0.2760
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free 0.3163
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5
_refine.ls_number_reflns_R_free 577
_refine.ls_number_parameters 8996
_refine.ls_number_restraints 17002
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct MAD
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details 'IN THIN SHELLS'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.entry_id 1UNJ
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues 0
_refine_analyze.occupancy_sum_hydrogen 0.0
_refine_analyze.occupancy_sum_non_hydrogen 2236.88
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 728
_refine_hist.pdbx_number_atoms_nucleic_acid 1503
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 14
_refine_hist.number_atoms_total 2245
_refine_hist.d_res_high 2.5
_refine_hist.d_res_low 20
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist 0.029 ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.159 ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol 0.003 ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr 0.004 ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt 0.002 ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.entry_id 1UNJ
_pdbx_refine.R_factor_all_no_cutoff ?
_pdbx_refine.R_factor_obs_no_cutoff 0.2760
_pdbx_refine.free_R_factor_no_cutoff 0.3163
_pdbx_refine.free_R_error_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5
_pdbx_refine.free_R_val_test_set_ct_no_cutoff 577
_pdbx_refine.R_factor_all_4sig_cutoff ?
_pdbx_refine.R_factor_obs_4sig_cutoff 0.2576
_pdbx_refine.free_R_factor_4sig_cutoff 0.2962
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 13.2
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 501
_pdbx_refine.number_reflns_obs_4sig_cutoff 9358
#
_database_PDB_matrix.entry_id 1UNJ
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1UNJ
_struct.title 'Crystal structure of a 7-Aminoactinomycin D complex with non-complementary DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1UNJ
_struct_keywords.pdbx_keywords DNA/ANTIBIOTIC
_struct_keywords.text
;ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX, FLUORESCENT AGENT, HOOGSTEN BASE-PAIR
;
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 1 ?
D N N 1 ?
E N N 2 ?
F N N 2 ?
G N N 1 ?
H N N 1 ?
I N N 1 ?
J N N 1 ?
K N N 2 ?
L N N 2 ?
M N N 1 ?
N N N 1 ?
O N N 1 ?
P N N 1 ?
Q N N 2 ?
R N N 2 ?
S N N 1 ?
T N N 1 ?
U N N 1 ?
V N N 1 ?
W N N 2 ?
X N N 2 ?
Y N N 3 ?
Z N N 3 ?
AA N N 3 ?
BA N N 3 ?
CA N N 3 ?
DA N N 3 ?
EA N N 3 ?
FA N N 3 ?
GA N N 3 ?
HA N N 3 ?
IA N N 3 ?
JA N N 3 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
1 PDB 1UNJ 1 ? ? 1UNJ ?
2 NOR NOR00228 2 ? ? NOR00228 ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1UNJ A 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
2 1 1UNJ B 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
3 1 1UNJ C 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
4 1 1UNJ D 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
5 1 1UNJ G 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
6 1 1UNJ H 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
7 1 1UNJ I 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
8 1 1UNJ J 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
9 1 1UNJ M 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
10 1 1UNJ N 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
11 1 1UNJ O 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
12 1 1UNJ P 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
13 1 1UNJ S 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
14 1 1UNJ T 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
15 1 1UNJ U 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
16 1 1UNJ V 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6
17 2 1UNJ E 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
18 2 1UNJ F 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
19 2 1UNJ K 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
20 2 1UNJ L 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
21 2 1UNJ Q 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
22 2 1UNJ R 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
23 2 1UNJ W 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
24 2 1UNJ X 1 ? 11 ? NOR00228 1 ? 11 ? 1 11
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
17 1UNJ PX1 E 6 ? NOR NOR00228 PXZ 6 chromophore 6 1
18 1UNJ PX1 F 6 ? NOR NOR00228 PXZ 6 chromophore 6 2
19 1UNJ PX1 K 6 ? NOR NOR00228 PXZ 6 chromophore 6 3
20 1UNJ PX1 L 6 ? NOR NOR00228 PXZ 6 chromophore 6 4
21 1UNJ PX1 Q 6 ? NOR NOR00228 PXZ 6 chromophore 6 5
22 1UNJ PX1 R 6 ? NOR NOR00228 PXZ 6 chromophore 6 6
23 1UNJ PX1 W 6 ? NOR NOR00228 PXZ 6 chromophore 6 7
24 1UNJ PX1 X 6 ? NOR NOR00228 PXZ 6 chromophore 6 8
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_defined_assembly ? dodecameric 12
2 author_defined_assembly ? dodecameric 12
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D,E,F,G,H,I,J,K,L,Y,Z,AA,BA,CA
2 1 M,N,O,P,Q,R,S,T,U,V,W,X,DA,EA,FA,GA,HA,IA,JA
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A BRU 5 P ? ? A DG 4 A BRU 5 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale2 covale both ? A BRU 5 "O3'" ? ? ? 1_555 A DT 6 P ? ? A BRU 5 A DT 6 1_555 ? ? ? ? ? ? ? 1.613 ? ?
covale3 covale both ? B DG 4 "O3'" ? ? ? 1_555 B BRU 5 P ? ? B DG 4 B BRU 5 1_555 ? ? ? ? ? ? ? 1.613 ? ?
covale4 covale both ? B BRU 5 "O3'" ? ? ? 1_555 B DT 6 P ? ? B BRU 5 B DT 6 1_555 ? ? ? ? ? ? ? 1.606 ? ?
covale5 covale both ? C DG 4 "O3'" ? ? ? 1_555 C BRU 5 P ? ? C DG 4 C BRU 5 1_555 ? ? ? ? ? ? ? 1.616 ? ?
covale6 covale both ? C BRU 5 "O3'" ? ? ? 1_555 C DT 6 P ? ? C BRU 5 C DT 6 1_555 ? ? ? ? ? ? ? 1.605 ? ?
covale7 covale both ? D DG 4 "O3'" ? ? ? 1_555 D BRU 5 P ? ? D DG 4 D BRU 5 1_555 ? ? ? ? ? ? ? 1.615 ? ?
covale8 covale both ? D BRU 5 "O3'" ? ? ? 1_555 D DT 6 P ? ? D BRU 5 D DT 6 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale9 covale both ? E THR 1 C ? ? ? 1_555 E DVA 2 N ? ? E THR 1 E DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale10 covale one ? E THR 1 OG1 ? ? ? 1_555 E MVA 5 C ? ? E THR 1 E MVA 5 1_555 ? ? ? ? ? ? ? 1.346 ? ?
covale11 covale both ? E THR 1 N ? ? ? 1_555 E PX1 6 C0 ? ? E THR 1 E PX1 6 1_555 ? ? ? ? ? ? ? 1.331 ? ?
covale12 covale both ? E DVA 2 C ? ? ? 1_555 E PRO 3 N ? ? E DVA 2 E PRO 3 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale13 covale both ? E PRO 3 C ? ? ? 1_555 E SAR 4 N ? ? E PRO 3 E SAR 4 1_555 ? ? ? ? ? ? ? 1.322 ? ?
covale14 covale both ? E SAR 4 C ? ? ? 1_555 E MVA 5 N ? ? E SAR 4 E MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale15 covale both ? E PX1 6 "C0'" ? ? ? 1_555 E THR 7 N ? ? E PX1 6 E THR 7 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale16 covale both ? E THR 7 C ? ? ? 1_555 E DVA 8 N ? ? E THR 7 E DVA 8 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale17 covale one ? E THR 7 OG1 ? ? ? 1_555 E MVA 11 C ? ? E THR 7 E MVA 11 1_555 ? ? ? ? ? ? ? 1.350 ? ?
covale18 covale both ? E DVA 8 C ? ? ? 1_555 E PRO 9 N ? ? E DVA 8 E PRO 9 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale19 covale both ? E PRO 9 C ? ? ? 1_555 E SAR 10 N ? ? E PRO 9 E SAR 10 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale20 covale both ? E SAR 10 C ? ? ? 1_555 E MVA 11 N ? ? E SAR 10 E MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale21 covale both ? F THR 1 C ? ? ? 1_555 F DVA 2 N ? ? F THR 1 F DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale22 covale one ? F THR 1 OG1 ? ? ? 1_555 F MVA 5 C ? ? F THR 1 F MVA 5 1_555 ? ? ? ? ? ? ? 1.351 ? ?
covale23 covale both ? F THR 1 N ? ? ? 1_555 F PX1 6 C0 ? ? F THR 1 F PX1 6 1_555 ? ? ? ? ? ? ? 1.337 ? ?
covale24 covale both ? F DVA 2 C ? ? ? 1_555 F PRO 3 N ? ? F DVA 2 F PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale25 covale both ? F PRO 3 C ? ? ? 1_555 F SAR 4 N ? ? F PRO 3 F SAR 4 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale26 covale both ? F SAR 4 C ? ? ? 1_555 F MVA 5 N ? ? F SAR 4 F MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale27 covale both ? F PX1 6 "C0'" ? ? ? 1_555 F THR 7 N ? ? F PX1 6 F THR 7 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale28 covale both ? F THR 7 C ? ? ? 1_555 F DVA 8 N ? ? F THR 7 F DVA 8 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale29 covale one ? F THR 7 OG1 ? ? ? 1_555 F MVA 11 C ? ? F THR 7 F MVA 11 1_555 ? ? ? ? ? ? ? 1.357 ? ?
covale30 covale both ? F DVA 8 C ? ? ? 1_555 F PRO 9 N ? ? F DVA 8 F PRO 9 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale31 covale both ? F PRO 9 C ? ? ? 1_555 F SAR 10 N ? ? F PRO 9 F SAR 10 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale32 covale both ? F SAR 10 C ? ? ? 1_555 F MVA 11 N ? ? F SAR 10 F MVA 11 1_555 ? ? ? ? ? ? ? 1.334 ? ?
covale33 covale both ? G DG 4 "O3'" ? ? ? 1_555 G BRU 5 P ? ? G DG 4 G BRU 5 1_555 ? ? ? ? ? ? ? 1.604 ? ?
covale34 covale both ? G BRU 5 "O3'" ? ? ? 1_555 G DT 6 P ? ? G BRU 5 G DT 6 1_555 ? ? ? ? ? ? ? 1.616 ? ?
covale35 covale both ? H DG 4 "O3'" ? ? ? 1_555 H BRU 5 P ? ? H DG 4 H BRU 5 1_555 ? ? ? ? ? ? ? 1.601 ? ?
covale36 covale both ? H BRU 5 "O3'" ? ? ? 1_555 H DT 6 P ? ? H BRU 5 H DT 6 1_555 ? ? ? ? ? ? ? 1.616 ? ?
covale37 covale both ? I DG 4 "O3'" ? ? ? 1_555 I BRU 5 P ? ? I DG 4 I BRU 5 1_555 ? ? ? ? ? ? ? 1.612 ? ?
covale38 covale both ? I BRU 5 "O3'" ? ? ? 1_555 I DT 6 P ? ? I BRU 5 I DT 6 1_555 ? ? ? ? ? ? ? 1.614 ? ?
covale39 covale both ? J DG 4 "O3'" ? ? ? 1_555 J BRU 5 P ? ? J DG 4 J BRU 5 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale40 covale both ? J BRU 5 "O3'" ? ? ? 1_555 J DT 6 P ? ? J BRU 5 J DT 6 1_555 ? ? ? ? ? ? ? 1.615 ? ?
covale41 covale both ? K THR 1 C ? ? ? 1_555 K DVA 2 N ? ? K THR 1 K DVA 2 1_555 ? ? ? ? ? ? ? 1.337 ? ?
covale42 covale one ? K THR 1 OG1 ? ? ? 1_555 K MVA 5 C ? ? K THR 1 K MVA 5 1_555 ? ? ? ? ? ? ? 1.352 ? ?
covale43 covale both ? K THR 1 N ? ? ? 1_555 K PX1 6 C0 ? ? K THR 1 K PX1 6 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale44 covale both ? K DVA 2 C ? ? ? 1_555 K PRO 3 N ? ? K DVA 2 K PRO 3 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale45 covale both ? K PRO 3 C ? ? ? 1_555 K SAR 4 N ? ? K PRO 3 K SAR 4 1_555 ? ? ? ? ? ? ? 1.322 ? ?
covale46 covale both ? K SAR 4 C ? ? ? 1_555 K MVA 5 N ? ? K SAR 4 K MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale47 covale both ? K PX1 6 "C0'" ? ? ? 1_555 K THR 7 N ? ? K PX1 6 K THR 7 1_555 ? ? ? ? ? ? ? 1.329 ? ?
covale48 covale both ? K THR 7 C ? ? ? 1_555 K DVA 8 N ? ? K THR 7 K DVA 8 1_555 ? ? ? ? ? ? ? 1.337 ? ?
covale49 covale one ? K THR 7 OG1 ? ? ? 1_555 K MVA 11 C ? ? K THR 7 K MVA 11 1_555 ? ? ? ? ? ? ? 1.341 ? ?
covale50 covale both ? K DVA 8 C ? ? ? 1_555 K PRO 9 N ? ? K DVA 8 K PRO 9 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale51 covale both ? K PRO 9 C ? ? ? 1_555 K SAR 10 N ? ? K PRO 9 K SAR 10 1_555 ? ? ? ? ? ? ? 1.320 ? ?
covale52 covale both ? K SAR 10 C ? ? ? 1_555 K MVA 11 N ? ? K SAR 10 K MVA 11 1_555 ? ? ? ? ? ? ? 1.334 ? ?
covale53 covale both ? L THR 1 C ? ? ? 1_555 L DVA 2 N ? ? L THR 1 L DVA 2 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale54 covale one ? L THR 1 OG1 ? ? ? 1_555 L MVA 5 C ? ? L THR 1 L MVA 5 1_555 ? ? ? ? ? ? ? 1.348 ? ?
covale55 covale both ? L THR 1 N ? ? ? 1_555 L PX1 6 C0 ? ? L THR 1 L PX1 6 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale56 covale both ? L DVA 2 C ? ? ? 1_555 L PRO 3 N ? ? L DVA 2 L PRO 3 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale57 covale both ? L PRO 3 C ? ? ? 1_555 L SAR 4 N ? ? L PRO 3 L SAR 4 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale58 covale both ? L SAR 4 C ? ? ? 1_555 L MVA 5 N ? ? L SAR 4 L MVA 5 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale59 covale both ? L PX1 6 "C0'" ? ? ? 1_555 L THR 7 N ? ? L PX1 6 L THR 7 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale60 covale both ? L THR 7 C ? ? ? 1_555 L DVA 8 N ? ? L THR 7 L DVA 8 1_555 ? ? ? ? ? ? ? 1.335 ? ?
covale61 covale one ? L THR 7 OG1 ? ? ? 1_555 L MVA 11 C ? ? L THR 7 L MVA 11 1_555 ? ? ? ? ? ? ? 1.349 ? ?
covale62 covale both ? L DVA 8 C ? ? ? 1_555 L PRO 9 N ? ? L DVA 8 L PRO 9 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale63 covale both ? L PRO 9 C ? ? ? 1_555 L SAR 10 N ? ? L PRO 9 L SAR 10 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale64 covale both ? L SAR 10 C ? ? ? 1_555 L MVA 11 N ? ? L SAR 10 L MVA 11 1_555 ? ? ? ? ? ? ? 1.334 ? ?
covale65 covale both ? M DG 4 "O3'" ? ? ? 1_555 M BRU 5 P ? ? M DG 4 M BRU 5 1_555 ? ? ? ? ? ? ? 1.611 ? ?
covale66 covale both ? M BRU 5 "O3'" ? ? ? 1_555 M DT 6 P ? ? M BRU 5 M DT 6 1_555 ? ? ? ? ? ? ? 1.614 ? ?
covale67 covale both ? N DG 4 "O3'" ? ? ? 1_555 N BRU 5 P ? ? N DG 4 N BRU 5 1_555 ? ? ? ? ? ? ? 1.603 ? ?
covale68 covale both ? N BRU 5 "O3'" ? ? ? 1_555 N DT 6 P ? ? N BRU 5 N DT 6 1_555 ? ? ? ? ? ? ? 1.612 ? ?
covale69 covale both ? O DG 4 "O3'" ? ? ? 1_555 O BRU 5 P ? ? O DG 4 O BRU 5 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale70 covale both ? O BRU 5 "O3'" ? ? ? 1_555 O DT 6 P ? ? O BRU 5 O DT 6 1_555 ? ? ? ? ? ? ? 1.601 ? ?
covale71 covale both ? P DG 4 "O3'" ? ? ? 1_555 P BRU 5 P ? ? P DG 4 P BRU 5 1_555 ? ? ? ? ? ? ? 1.611 ? ?
covale72 covale both ? P BRU 5 "O3'" ? ? ? 1_555 P DT 6 P ? ? P BRU 5 P DT 6 1_555 ? ? ? ? ? ? ? 1.611 ? ?
covale73 covale both ? Q THR 1 C ? ? ? 1_555 Q DVA 2 N ? ? Q THR 1 Q DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale74 covale one ? Q THR 1 OG1 ? ? ? 1_555 Q MVA 5 C ? ? Q THR 1 Q MVA 5 1_555 ? ? ? ? ? ? ? 1.347 ? ?
covale75 covale both ? Q THR 1 N ? ? ? 1_555 Q PX1 6 C0 ? ? Q THR 1 Q PX1 6 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale76 covale both ? Q DVA 2 C ? ? ? 1_555 Q PRO 3 N ? ? Q DVA 2 Q PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale77 covale both ? Q PRO 3 C ? ? ? 1_555 Q SAR 4 N ? ? Q PRO 3 Q SAR 4 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale78 covale both ? Q SAR 4 C ? ? ? 1_555 Q MVA 5 N ? ? Q SAR 4 Q MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale79 covale both ? Q PX1 6 "C0'" ? ? ? 1_555 Q THR 7 N ? ? Q PX1 6 Q THR 7 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale80 covale both ? Q THR 7 C ? ? ? 1_555 Q DVA 8 N ? ? Q THR 7 Q DVA 8 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale81 covale one ? Q THR 7 OG1 ? ? ? 1_555 Q MVA 11 C ? ? Q THR 7 Q MVA 11 1_555 ? ? ? ? ? ? ? 1.342 ? ?
covale82 covale both ? Q DVA 8 C ? ? ? 1_555 Q PRO 9 N ? ? Q DVA 8 Q PRO 9 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale83 covale both ? Q PRO 9 C ? ? ? 1_555 Q SAR 10 N ? ? Q PRO 9 Q SAR 10 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale84 covale both ? Q SAR 10 C ? ? ? 1_555 Q MVA 11 N ? ? Q SAR 10 Q MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale85 covale both ? R THR 1 C ? ? ? 1_555 R DVA 2 N ? ? R THR 1 R DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale86 covale one ? R THR 1 OG1 ? ? ? 1_555 R MVA 5 C ? ? R THR 1 R MVA 5 1_555 ? ? ? ? ? ? ? 1.347 ? ?
covale87 covale both ? R THR 1 N ? ? ? 1_555 R PX1 6 C0 ? ? R THR 1 R PX1 6 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale88 covale both ? R DVA 2 C ? ? ? 1_555 R PRO 3 N ? ? R DVA 2 R PRO 3 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale89 covale both ? R PRO 3 C ? ? ? 1_555 R SAR 4 N ? ? R PRO 3 R SAR 4 1_555 ? ? ? ? ? ? ? 1.331 ? ?
covale90 covale both ? R SAR 4 C ? ? ? 1_555 R MVA 5 N ? ? R SAR 4 R MVA 5 1_555 ? ? ? ? ? ? ? 1.331 ? ?
covale91 covale both ? R PX1 6 "C0'" ? ? ? 1_555 R THR 7 N ? ? R PX1 6 R THR 7 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale92 covale both ? R THR 7 C ? ? ? 1_555 R DVA 8 N ? ? R THR 7 R DVA 8 1_555 ? ? ? ? ? ? ? 1.331 ? ?
covale93 covale one ? R THR 7 OG1 ? ? ? 1_555 R MVA 11 C ? ? R THR 7 R MVA 11 1_555 ? ? ? ? ? ? ? 1.346 ? ?
covale94 covale both ? R DVA 8 C ? ? ? 1_555 R PRO 9 N ? ? R DVA 8 R PRO 9 1_555 ? ? ? ? ? ? ? 1.324 ? ?
covale95 covale both ? R PRO 9 C ? ? ? 1_555 R SAR 10 N ? ? R PRO 9 R SAR 10 1_555 ? ? ? ? ? ? ? 1.329 ? ?
covale96 covale both ? R SAR 10 C ? ? ? 1_555 R MVA 11 N ? ? R SAR 10 R MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale97 covale both ? S DG 4 "O3'" ? ? ? 1_555 S BRU 5 P ? ? S DG 4 S BRU 5 1_555 ? ? ? ? ? ? ? 1.603 ? ?
covale98 covale both ? S BRU 5 "O3'" ? ? ? 1_555 S DT 6 P ? ? S BRU 5 S DT 6 1_555 ? ? ? ? ? ? ? 1.606 ? ?
covale99 covale both ? T DG 4 "O3'" ? ? ? 1_555 T BRU 5 P ? ? T DG 4 T BRU 5 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale100 covale both ? T BRU 5 "O3'" ? ? ? 1_555 T DT 6 P ? ? T BRU 5 T DT 6 1_555 ? ? ? ? ? ? ? 1.614 ? ?
covale101 covale both ? U DG 4 "O3'" ? ? ? 1_555 U BRU 5 P ? ? U DG 4 U BRU 5 1_555 ? ? ? ? ? ? ? 1.610 ? ?
covale102 covale both ? U BRU 5 "O3'" ? ? ? 1_555 U DT 6 P ? ? U BRU 5 U DT 6 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale103 covale both ? V DG 4 "O3'" ? ? ? 1_555 V BRU 5 P ? ? V DG 4 V BRU 5 1_555 ? ? ? ? ? ? ? 1.610 ? ?
covale104 covale both ? V BRU 5 "O3'" ? ? ? 1_555 V DT 6 P ? ? V BRU 5 V DT 6 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale105 covale both ? W THR 1 C ? ? ? 1_555 W DVA 2 N ? ? W THR 1 W DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale106 covale one ? W THR 1 OG1 ? ? ? 1_555 W MVA 5 C ? ? W THR 1 W MVA 5 1_555 ? ? ? ? ? ? ? 1.352 ? ?
covale107 covale both ? W THR 1 N ? ? ? 1_555 W PX1 6 C0 ? ? W THR 1 W PX1 6 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale108 covale both ? W DVA 2 C ? ? ? 1_555 W PRO 3 N ? ? W DVA 2 W PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale109 covale both ? W PRO 3 C ? ? ? 1_555 W SAR 4 N ? ? W PRO 3 W SAR 4 1_555 ? ? ? ? ? ? ? 1.321 ? ?
covale110 covale both ? W SAR 4 C ? ? ? 1_555 W MVA 5 N ? ? W SAR 4 W MVA 5 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale111 covale both ? W PX1 6 "C0'" ? ? ? 1_555 W THR 7 N ? ? W PX1 6 W THR 7 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale112 covale both ? W THR 7 C ? ? ? 1_555 W DVA 8 N ? ? W THR 7 W DVA 8 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale113 covale one ? W THR 7 OG1 ? ? ? 1_555 W MVA 11 C ? ? W THR 7 W MVA 11 1_555 ? ? ? ? ? ? ? 1.351 ? ?
covale114 covale both ? W DVA 8 C ? ? ? 1_555 W PRO 9 N ? ? W DVA 8 W PRO 9 1_555 ? ? ? ? ? ? ? 1.324 ? ?
covale115 covale both ? W PRO 9 C ? ? ? 1_555 W SAR 10 N ? ? W PRO 9 W SAR 10 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale116 covale both ? W SAR 10 C ? ? ? 1_555 W MVA 11 N ? ? W SAR 10 W MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale117 covale both ? X THR 1 C ? ? ? 1_555 X DVA 2 N ? ? X THR 1 X DVA 2 1_555 ? ? ? ? ? ? ? 1.335 ? ?
covale118 covale one ? X THR 1 OG1 ? ? ? 1_555 X MVA 5 C ? ? X THR 1 X MVA 5 1_555 ? ? ? ? ? ? ? 1.347 ? ?
covale119 covale both ? X THR 1 N ? ? ? 1_555 X PX1 6 C0 ? ? X THR 1 X PX1 6 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale120 covale both ? X DVA 2 C ? ? ? 1_555 X PRO 3 N ? ? X DVA 2 X PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale121 covale both ? X PRO 3 C ? ? ? 1_555 X SAR 4 N ? ? X PRO 3 X SAR 4 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale122 covale both ? X SAR 4 C ? ? ? 1_555 X MVA 5 N ? ? X SAR 4 X MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale123 covale both ? X PX1 6 "C0'" ? ? ? 1_555 X THR 7 N ? ? X PX1 6 X THR 7 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale124 covale both ? X THR 7 C ? ? ? 1_555 X DVA 8 N ? ? X THR 7 X DVA 8 1_555 ? ? ? ? ? ? ? 1.334 ? ?
covale125 covale one ? X THR 7 OG1 ? ? ? 1_555 X MVA 11 C ? ? X THR 7 X MVA 11 1_555 ? ? ? ? ? ? ? 1.342 ? ?
covale126 covale both ? X DVA 8 C ? ? ? 1_555 X PRO 9 N ? ? X DVA 8 X PRO 9 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale127 covale both ? X PRO 9 C ? ? ? 1_555 X SAR 10 N ? ? X PRO 9 X SAR 10 1_555 ? ? ? ? ? ? ? 1.324 ? ?
covale128 covale both ? X SAR 10 C ? ? ? 1_555 X MVA 11 N ? ? X SAR 10 X MVA 11 1_555 ? ? ? ? ? ? ? 1.331 ? ?
hydrog1 hydrog ? ? A BRU 5 N3 ? ? ? 1_555 C DG 4 O6 ? ? A BRU 5 C DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog2 hydrog ? ? A BRU 5 O2 ? ? ? 1_555 C DG 4 N1 ? ? A BRU 5 C DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog3 hydrog ? ? A DT 6 N3 ? ? ? 1_555 C DA 3 N1 ? ? A DT 6 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 6 O4 ? ? ? 1_555 C DA 3 N6 ? ? A DT 6 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? B DA 3 N1 ? ? ? 1_555 D DT 6 N3 ? ? B DA 3 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? B DA 3 N6 ? ? ? 1_555 D DT 6 O4 ? ? B DA 3 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? B DG 4 N1 ? ? ? 1_555 D BRU 5 O2 ? ? B DG 4 D BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog8 hydrog ? ? B DG 4 O6 ? ? ? 1_555 D BRU 5 N3 ? ? B DG 4 D BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog9 hydrog ? ? B BRU 5 N3 ? ? ? 1_555 D DG 4 O6 ? ? B BRU 5 D DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog10 hydrog ? ? B BRU 5 O2 ? ? ? 1_555 D DG 4 N1 ? ? B BRU 5 D DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog11 hydrog ? ? B DT 6 N3 ? ? ? 1_555 G DG 4 O6 ? ? B DT 6 G DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog12 hydrog ? ? B DT 6 O2 ? ? ? 1_555 G DG 4 N1 ? ? B DT 6 G DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog13 hydrog ? ? D DT 2 N3 ? ? ? 1_555 G DA 3 N1 ? ? D DT 2 G DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? D DT 2 O4 ? ? ? 1_555 G DA 3 N6 ? ? D DT 2 G DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? D DA 3 N1 ? ? ? 1_555 G DT 2 N3 ? ? D DA 3 G DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? D DA 3 N6 ? ? ? 1_555 G DT 2 O4 ? ? D DA 3 G DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? G BRU 5 N3 ? ? ? 1_555 I DG 4 O6 ? ? G BRU 5 I DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog18 hydrog ? ? G BRU 5 O2 ? ? ? 1_555 I DG 4 N1 ? ? G BRU 5 I DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog19 hydrog ? ? G DT 6 N3 ? ? ? 1_555 I DA 3 N1 ? ? G DT 6 I DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? G DT 6 O4 ? ? ? 1_555 I DA 3 N6 ? ? G DT 6 I DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? H DA 3 N1 ? ? ? 1_555 J DT 6 N3 ? ? H DA 3 J DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? H DA 3 N6 ? ? ? 1_555 J DT 6 O4 ? ? H DA 3 J DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? H DG 4 N1 ? ? ? 1_555 J BRU 5 O2 ? ? H DG 4 J BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog24 hydrog ? ? H DG 4 O6 ? ? ? 1_555 J BRU 5 N3 ? ? H DG 4 J BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog25 hydrog ? ? H BRU 5 N3 ? ? ? 1_555 J DG 4 O6 ? ? H BRU 5 J DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog26 hydrog ? ? H BRU 5 O2 ? ? ? 1_555 J DG 4 N1 ? ? H BRU 5 J DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog27 hydrog ? ? M BRU 5 N3 ? ? ? 1_555 O DG 4 O6 ? ? M BRU 5 O DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog28 hydrog ? ? M BRU 5 O2 ? ? ? 1_555 O DG 4 N1 ? ? M BRU 5 O DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog29 hydrog ? ? M DT 6 N3 ? ? ? 1_555 O DA 3 N1 ? ? M DT 6 O DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? M DT 6 O4 ? ? ? 1_555 O DA 3 N6 ? ? M DT 6 O DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? N DA 3 N1 ? ? ? 1_555 P DT 6 N3 ? ? N DA 3 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? N DA 3 N6 ? ? ? 1_555 P DT 6 O4 ? ? N DA 3 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? N DG 4 N1 ? ? ? 1_555 P BRU 5 O2 ? ? N DG 4 P BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog34 hydrog ? ? N DG 4 O6 ? ? ? 1_555 P BRU 5 N3 ? ? N DG 4 P BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog35 hydrog ? ? N BRU 5 N3 ? ? ? 1_555 P DG 4 O6 ? ? N BRU 5 P DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog36 hydrog ? ? N BRU 5 O2 ? ? ? 1_555 P DG 4 N1 ? ? N BRU 5 P DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog37 hydrog ? ? N DT 6 N3 ? ? ? 1_555 S DG 4 O6 ? ? N DT 6 S DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog38 hydrog ? ? N DT 6 O2 ? ? ? 1_555 S DG 4 N1 ? ? N DT 6 S DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog39 hydrog ? ? P DT 2 N3 ? ? ? 1_555 S DA 3 N1 ? ? P DT 2 S DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog40 hydrog ? ? P DT 2 O4 ? ? ? 1_555 S DA 3 N6 ? ? P DT 2 S DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog41 hydrog ? ? P DA 3 N1 ? ? ? 1_555 S DT 2 N3 ? ? P DA 3 S DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog42 hydrog ? ? P DA 3 N6 ? ? ? 1_555 S DT 2 O4 ? ? P DA 3 S DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog43 hydrog ? ? S BRU 5 N3 ? ? ? 1_555 U DG 4 O6 ? ? S BRU 5 U DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog44 hydrog ? ? S BRU 5 O2 ? ? ? 1_555 U DG 4 N1 ? ? S BRU 5 U DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog45 hydrog ? ? S DT 6 N3 ? ? ? 1_555 U DA 3 N1 ? ? S DT 6 U DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog46 hydrog ? ? S DT 6 O4 ? ? ? 1_555 U DA 3 N6 ? ? S DT 6 U DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog47 hydrog ? ? T DA 3 N1 ? ? ? 1_555 V DT 6 N3 ? ? T DA 3 V DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog48 hydrog ? ? T DA 3 N6 ? ? ? 1_555 V DT 6 O4 ? ? T DA 3 V DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog49 hydrog ? ? T DG 4 N1 ? ? ? 1_555 V BRU 5 O2 ? ? T DG 4 V BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog50 hydrog ? ? T DG 4 O6 ? ? ? 1_555 V BRU 5 N3 ? ? T DG 4 V BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog51 hydrog ? ? T BRU 5 N3 ? ? ? 1_555 V DG 4 O6 ? ? T BRU 5 V DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog52 hydrog ? ? T BRU 5 O2 ? ? ? 1_555 V DG 4 N1 ? ? T BRU 5 V DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog53 hydrog ? ? V DT 1 N3 ? ? ? 1_555 V DA 3 N7 ? ? V DT 1 V DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog54 hydrog ? ? V DT 1 O4 ? ? ? 1_555 V DA 3 N6 ? ? V DT 1 V DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 SAR E 4 ? . . . . SAR E 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
2 MVA E 5 ? . . . . MVA E 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
3 SAR E 10 ? . . . . SAR E 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
4 MVA E 11 ? . . . . MVA E 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
5 SAR F 4 ? . . . . SAR F 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
6 MVA F 5 ? . . . . MVA F 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
7 SAR F 10 ? . . . . SAR F 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
8 MVA F 11 ? . . . . MVA F 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
9 SAR K 4 ? . . . . SAR K 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
10 MVA K 5 ? . . . . MVA K 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
11 SAR K 10 ? . . . . SAR K 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
12 MVA K 11 ? . . . . MVA K 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
13 SAR L 4 ? . . . . SAR L 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
14 MVA L 5 ? . . . . MVA L 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
15 SAR L 10 ? . . . . SAR L 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
16 MVA L 11 ? . . . . MVA L 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
17 SAR Q 4 ? . . . . SAR Q 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
18 MVA Q 5 ? . . . . MVA Q 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
19 SAR Q 10 ? . . . . SAR Q 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
20 MVA Q 11 ? . . . . MVA Q 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
21 SAR R 4 ? . . . . SAR R 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
22 MVA R 5 ? . . . . MVA R 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
23 SAR R 10 ? . . . . SAR R 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
24 MVA R 11 ? . . . . MVA R 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
25 SAR W 4 ? . . . . SAR W 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
26 MVA W 5 ? . . . . MVA W 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
27 SAR W 10 ? . . . . SAR W 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
28 MVA W 11 ? . . . . MVA W 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
29 SAR X 4 ? . . . . SAR X 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
30 MVA X 5 ? . . . . MVA X 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
31 SAR X 10 ? . . . . SAR X 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification'
32 MVA X 11 ? . . . . MVA X 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification'
33 PX1 E 6 ? . . . . PX1 E 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
34 PX1 F 6 ? . . . . PX1 F 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
35 PX1 K 6 ? . . . . PX1 K 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
36 PX1 L 6 ? . . . . PX1 L 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
37 PX1 Q 6 ? . . . . PX1 Q 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
38 PX1 R 6 ? . . . . PX1 R 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
39 PX1 W 6 ? . . . . PX1 W 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
40 PX1 X 6 ? . . . . PX1 X 6 ? 1_555 . . . . . . . ? 1 PX1 None 'Non-standard residue'
41 THR E 1 ? MVA E 5 ? THR E 1 ? 1_555 MVA E 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
42 THR E 1 ? PX1 E 6 ? THR E 1 ? 1_555 PX1 E 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
43 THR E 7 ? MVA E 11 ? THR E 7 ? 1_555 MVA E 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
44 THR F 1 ? MVA F 5 ? THR F 1 ? 1_555 MVA F 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
45 THR F 1 ? PX1 F 6 ? THR F 1 ? 1_555 PX1 F 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
46 THR F 7 ? MVA F 11 ? THR F 7 ? 1_555 MVA F 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
47 THR K 1 ? MVA K 5 ? THR K 1 ? 1_555 MVA K 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
48 THR K 1 ? PX1 K 6 ? THR K 1 ? 1_555 PX1 K 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
49 THR K 7 ? MVA K 11 ? THR K 7 ? 1_555 MVA K 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
50 THR L 1 ? MVA L 5 ? THR L 1 ? 1_555 MVA L 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
51 THR L 1 ? PX1 L 6 ? THR L 1 ? 1_555 PX1 L 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
52 THR L 7 ? MVA L 11 ? THR L 7 ? 1_555 MVA L 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
53 THR Q 1 ? MVA Q 5 ? THR Q 1 ? 1_555 MVA Q 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
54 THR Q 1 ? PX1 Q 6 ? THR Q 1 ? 1_555 PX1 Q 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
55 THR Q 7 ? MVA Q 11 ? THR Q 7 ? 1_555 MVA Q 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
56 THR R 1 ? MVA R 5 ? THR R 1 ? 1_555 MVA R 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
57 THR R 1 ? PX1 R 6 ? THR R 1 ? 1_555 PX1 R 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
58 THR R 7 ? MVA R 11 ? THR R 7 ? 1_555 MVA R 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
59 THR W 1 ? MVA W 5 ? THR W 1 ? 1_555 MVA W 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
60 THR W 1 ? PX1 W 6 ? THR W 1 ? 1_555 PX1 W 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
61 THR W 7 ? MVA W 11 ? THR W 7 ? 1_555 MVA W 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
62 THR X 1 ? MVA X 5 ? THR X 1 ? 1_555 MVA X 5 ? 1_555 OG1 C . . . None 'Non-standard linkage'
63 THR X 1 ? PX1 X 6 ? THR X 1 ? 1_555 PX1 X 6 ? 1_555 N C0 . . . None 'Non-standard linkage'
64 THR X 7 ? MVA X 11 ? THR X 7 ? 1_555 MVA X 11 ? 1_555 OG1 C . . . None 'Non-standard linkage'
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 DVA 2 E . ? DVA 2 E PRO 3 E ? PRO 3 E 1 13.05
2 PRO 3 E . ? PRO 3 E SAR 4 E ? SAR 4 E 1 -1.26
3 DVA 8 E . ? DVA 8 E PRO 9 E ? PRO 9 E 1 3.98
4 PRO 9 E . ? PRO 9 E SAR 10 E ? SAR 10 E 1 -10.56
5 DVA 2 F . ? DVA 2 F PRO 3 F ? PRO 3 F 1 8.76
6 PRO 3 F . ? PRO 3 F SAR 4 F ? SAR 4 F 1 -3.41
7 DVA 8 F . ? DVA 8 F PRO 9 F ? PRO 9 F 1 7.29
8 PRO 9 F . ? PRO 9 F SAR 10 F ? SAR 10 F 1 5.00
9 DVA 2 K . ? DVA 2 K PRO 3 K ? PRO 3 K 1 9.46
10 PRO 3 K . ? PRO 3 K SAR 4 K ? SAR 4 K 1 1.73
11 DVA 8 K . ? DVA 8 K PRO 9 K ? PRO 9 K 1 4.94
12 PRO 9 K . ? PRO 9 K SAR 10 K ? SAR 10 K 1 -8.31
13 DVA 2 L . ? DVA 2 L PRO 3 L ? PRO 3 L 1 7.85
14 PRO 3 L . ? PRO 3 L SAR 4 L ? SAR 4 L 1 -4.78
15 DVA 8 L . ? DVA 8 L PRO 9 L ? PRO 9 L 1 5.59
16 PRO 9 L . ? PRO 9 L SAR 10 L ? SAR 10 L 1 6.88
17 DVA 2 Q . ? DVA 2 Q PRO 3 Q ? PRO 3 Q 1 5.71
18 PRO 3 Q . ? PRO 3 Q SAR 4 Q ? SAR 4 Q 1 -3.66
19 DVA 8 Q . ? DVA 8 Q PRO 9 Q ? PRO 9 Q 1 4.41
20 PRO 9 Q . ? PRO 9 Q SAR 10 Q ? SAR 10 Q 1 -5.47
21 DVA 2 R . ? DVA 2 R PRO 3 R ? PRO 3 R 1 10.29
22 PRO 3 R . ? PRO 3 R SAR 4 R ? SAR 4 R 1 -7.25
23 DVA 8 R . ? DVA 8 R PRO 9 R ? PRO 9 R 1 4.04
24 PRO 9 R . ? PRO 9 R SAR 10 R ? SAR 10 R 1 5.67
25 DVA 2 W . ? DVA 2 W PRO 3 W ? PRO 3 W 1 5.92
26 PRO 3 W . ? PRO 3 W SAR 4 W ? SAR 4 W 1 0.89
27 DVA 8 W . ? DVA 8 W PRO 9 W ? PRO 9 W 1 7.99
28 PRO 9 W . ? PRO 9 W SAR 10 W ? SAR 10 W 1 -7.72
29 DVA 2 X . ? DVA 2 X PRO 3 X ? PRO 3 X 1 12.14
30 PRO 3 X . ? PRO 3 X SAR 4 X ? SAR 4 X 1 -12.28
31 DVA 8 X . ? DVA 8 X PRO 9 X ? PRO 9 X 1 5.42
32 PRO 9 X . ? PRO 9 X SAR 10 X ? SAR 10 X 1 4.72
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software ? ? ? ? 11 'BINDING SITE FOR CHAIN E OF 7-AMINO-ACTINOMYCIN D'
AC2 Software ? ? ? ? 8 'BINDING SITE FOR CHAIN F OF 7-AMINO-ACTINOMYCIN D'
AC3 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN K OF 7-AMINO-ACTINOMYCIN D'
AC4 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN L OF 7-AMINO-ACTINOMYCIN D'
AC5 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN Q OF 7-AMINO-ACTINOMYCIN D'
AC6 Software ? ? ? ? 11 'BINDING SITE FOR CHAIN R OF 7-AMINO-ACTINOMYCIN D'
AC7 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN W OF 7-AMINO-ACTINOMYCIN D'
AC8 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN X OF 7-AMINO-ACTINOMYCIN D'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 11 DA A 3 ? DA A 3 . ? 1_555 ?
2 AC1 11 DG A 4 ? DG A 4 . ? 1_555 ?
3 AC1 11 BRU A 5 ? BRU A 5 . ? 1_555 ?
4 AC1 11 DT A 6 ? DT A 6 . ? 1_555 ?
5 AC1 11 DA C 3 ? DA C 3 . ? 1_555 ?
6 AC1 11 DG C 4 ? DG C 4 . ? 1_555 ?
7 AC1 11 BRU C 5 ? BRU C 5 . ? 1_555 ?
8 AC1 11 DT H 6 ? DT H 6 . ? 1_655 ?
9 AC1 11 DT J 2 ? DT J 2 . ? 1_655 ?
10 AC1 11 BRU T 5 ? BRU T 5 . ? 4_566 ?
11 AC1 11 DT V 1 ? DT V 1 . ? 4_566 ?
12 AC2 8 DG B 4 ? DG B 4 . ? 1_555 ?
13 AC2 8 BRU B 5 ? BRU B 5 . ? 1_555 ?
14 AC2 8 DA D 3 ? DA D 3 . ? 1_555 ?
15 AC2 8 DG D 4 ? DG D 4 . ? 1_555 ?
16 AC2 8 BRU D 5 ? BRU D 5 . ? 1_555 ?
17 AC2 8 DT D 6 ? DT D 6 . ? 1_555 ?
18 AC2 8 DT G 2 ? DT G 2 . ? 1_555 ?
19 AC2 8 DA G 3 ? DA G 3 . ? 1_555 ?
20 AC3 10 DT B 6 ? DT B 6 . ? 1_555 ?
21 AC3 10 DT D 2 ? DT D 2 . ? 1_555 ?
22 AC3 10 DA G 3 ? DA G 3 . ? 1_555 ?
23 AC3 10 DG G 4 ? DG G 4 . ? 1_555 ?
24 AC3 10 BRU G 5 ? BRU G 5 . ? 1_555 ?
25 AC3 10 DT G 6 ? DT G 6 . ? 1_555 ?
26 AC3 10 DA I 3 ? DA I 3 . ? 1_555 ?
27 AC3 10 DG I 4 ? DG I 4 . ? 1_555 ?
28 AC3 10 BRU I 5 ? BRU I 5 . ? 1_555 ?
29 AC3 10 DVA L 2 ? DVA L 2 . ? 6_555 ?
30 AC4 10 DT A 2 ? DT A 2 . ? 1_455 ?
31 AC4 10 DA A 3 ? DA A 3 . ? 1_455 ?
32 AC4 10 DG H 4 ? DG H 4 . ? 1_555 ?
33 AC4 10 BRU H 5 ? BRU H 5 . ? 1_555 ?
34 AC4 10 DA J 3 ? DA J 3 . ? 1_555 ?
35 AC4 10 DG J 4 ? DG J 4 . ? 1_555 ?
36 AC4 10 BRU J 5 ? BRU J 5 . ? 4_466 ?
37 AC4 10 BRU J 5 ? BRU J 5 . ? 1_555 ?
38 AC4 10 DT J 6 ? DT J 6 . ? 1_555 ?
39 AC4 10 DVA K 8 ? DVA K 8 . ? 6_555 ?
40 AC5 12 DA M 3 ? DA M 3 . ? 1_555 ?
41 AC5 12 DG M 4 ? DG M 4 . ? 1_555 ?
42 AC5 12 BRU M 5 ? BRU M 5 . ? 1_555 ?
43 AC5 12 DT M 6 ? DT M 6 . ? 1_555 ?
44 AC5 12 DG O 4 ? DG O 4 . ? 1_555 ?
45 AC5 12 BRU O 5 ? BRU O 5 . ? 1_555 ?
46 AC5 12 HOH GA . ? HOH Q 2001 . ? 1_555 ?
47 AC5 12 DVA R 2 ? DVA R 2 . ? 4_556 ?
48 AC5 12 SAR R 4 ? SAR R 4 . ? 4_556 ?
49 AC5 12 DVA R 8 ? DVA R 8 . ? 4_556 ?
50 AC5 12 DT T 6 ? DT T 6 . ? 1_655 ?
51 AC5 12 DT V 2 ? DT V 2 . ? 1_655 ?
52 AC6 11 DA N 3 ? DA N 3 . ? 1_555 ?
53 AC6 11 DG N 4 ? DG N 4 . ? 1_555 ?
54 AC6 11 BRU N 5 ? BRU N 5 . ? 1_555 ?
55 AC6 11 DA P 3 ? DA P 3 . ? 1_555 ?
56 AC6 11 DG P 4 ? DG P 4 . ? 1_555 ?
57 AC6 11 BRU P 5 ? BRU P 5 . ? 1_555 ?
58 AC6 11 DT P 6 ? DT P 6 . ? 1_555 ?
59 AC6 11 DVA Q 2 ? DVA Q 2 . ? 4_556 ?
60 AC6 11 DVA Q 8 ? DVA Q 8 . ? 4_556 ?
61 AC6 11 DT S 2 ? DT S 2 . ? 1_555 ?
62 AC6 11 DA S 3 ? DA S 3 . ? 1_555 ?
63 AC7 10 DT N 6 ? DT N 6 . ? 1_555 ?
64 AC7 10 DT P 2 ? DT P 2 . ? 1_555 ?
65 AC7 10 DA S 3 ? DA S 3 . ? 1_555 ?
66 AC7 10 DG S 4 ? DG S 4 . ? 1_555 ?
67 AC7 10 BRU S 5 ? BRU S 5 . ? 1_555 ?
68 AC7 10 DT S 6 ? DT S 6 . ? 1_555 ?
69 AC7 10 DG U 4 ? DG U 4 . ? 1_555 ?
70 AC7 10 BRU U 5 ? BRU U 5 . ? 1_555 ?
71 AC7 10 HOH JA . ? HOH W 2001 . ? 1_555 ?
72 AC7 10 DVA X 2 ? DVA X 2 . ? 6_555 ?
73 AC8 12 DT M 2 ? DT M 2 . ? 1_455 ?
74 AC8 12 DA M 3 ? DA M 3 . ? 1_455 ?
75 AC8 12 DT S 6 ? DT S 6 . ? 1_555 ?
76 AC8 12 DA T 3 ? DA T 3 . ? 1_555 ?
77 AC8 12 DG T 4 ? DG T 4 . ? 1_555 ?
78 AC8 12 BRU T 5 ? BRU T 5 . ? 1_555 ?
79 AC8 12 DA V 3 ? DA V 3 . ? 1_555 ?
80 AC8 12 DG V 4 ? DG V 4 . ? 1_555 ?
81 AC8 12 BRU V 5 ? BRU V 5 . ? 1_555 ?
82 AC8 12 DT V 6 ? DT V 6 . ? 1_555 ?
83 AC8 12 DVA W 2 ? DVA W 2 . ? 6_555 ?
84 AC8 12 DVA W 8 ? DVA W 8 . ? 6_555 ?
#
_pdbx_entry_details.entry_id 1UNJ
_pdbx_entry_details.compound_details
;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE
ACTINOMYCIN FAMILY.
HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
GROUP: 1
NAME: ACTINOMYCIN D
CHAIN: E, F, K, L, Q, R, W, X
COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 11
DESCRIPTION: ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PX1)
THE CHROMOPHORE PX1 IS A MODIFIED PXZ WITH
C-NH2 REPLACING C-H IN POSITION 7 OF THE
PHENOXAZONE RING.
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O4
_pdbx_validate_symm_contact.auth_asym_id_1 I
_pdbx_validate_symm_contact.auth_comp_id_1 DT
_pdbx_validate_symm_contact.auth_seq_id_1 2
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 N6
_pdbx_validate_symm_contact.auth_asym_id_2 J
_pdbx_validate_symm_contact.auth_comp_id_2 DA
_pdbx_validate_symm_contact.auth_seq_id_2 3
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 4_466
_pdbx_validate_symm_contact.dist 2.19
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9 B DA 3 ? ? 103.64 108.00 -4.36 0.70 N
2 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? N1 C DT 2 ? ? 110.11 108.30 1.81 0.30 N
3 1 "O4'" N DA 3 ? ? "C1'" N DA 3 ? ? N9 N DA 3 ? ? 103.47 108.00 -4.53 0.70 N
4 1 "O4'" O DT 2 ? ? "C1'" O DT 2 ? ? N1 O DT 2 ? ? 111.56 108.30 3.26 0.30 N
5 1 "O4'" P DT 6 ? ? "C4'" P DT 6 ? ? "C3'" P DT 6 ? ? 102.02 104.50 -2.48 0.40 N
#
loop_
_pdbx_validate_main_chain_plane.id
_pdbx_validate_main_chain_plane.PDB_model_num
_pdbx_validate_main_chain_plane.auth_comp_id
_pdbx_validate_main_chain_plane.auth_asym_id
_pdbx_validate_main_chain_plane.auth_seq_id
_pdbx_validate_main_chain_plane.PDB_ins_code
_pdbx_validate_main_chain_plane.label_alt_id
_pdbx_validate_main_chain_plane.improper_torsion_angle
1 1 SAR Q 10 ? ? -10.31
2 1 THR R 1 ? ? -10.57
#
_pdbx_molecule_features.prd_id PRD_000010
_pdbx_molecule_features.name 7-AminoActinomycin
_pdbx_molecule_features.type Polypeptide
_pdbx_molecule_features.class Antibiotic
_pdbx_molecule_features.details
;ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PX1)
THE CHROMOPHORE PX1 IS A MODIFIED PXZ
WITH C-NH2 REPLACING C-H IN POSITION 7 OF THE
PHENOXAZONE RING.
;
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_000010 E
2 PRD_000010 F
3 PRD_000010 K
4 PRD_000010 L
5 PRD_000010 Q
6 PRD_000010 R
7 PRD_000010 W
8 PRD_000010 X
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A BRU 5 A BRU 5 ? DU ?
2 B BRU 5 B BRU 5 ? DU ?
3 C BRU 5 C BRU 5 ? DU ?
4 D BRU 5 D BRU 5 ? DU ?
5 E SAR 4 E SAR 4 ? GLY SARCOSINE
6 E MVA 5 E MVA 5 ? VAL N-METHYLVALINE
7 E SAR 10 E SAR 10 ? GLY SARCOSINE
8 E MVA 11 E MVA 11 ? VAL N-METHYLVALINE
9 F SAR 4 F SAR 4 ? GLY SARCOSINE
10 F MVA 5 F MVA 5 ? VAL N-METHYLVALINE
11 F SAR 10 F SAR 10 ? GLY SARCOSINE
12 F MVA 11 F MVA 11 ? VAL N-METHYLVALINE
13 G BRU 5 G BRU 5 ? DU ?
14 H BRU 5 H BRU 5 ? DU ?
15 I BRU 5 I BRU 5 ? DU ?
16 J BRU 5 J BRU 5 ? DU ?
17 K SAR 4 K SAR 4 ? GLY SARCOSINE
18 K MVA 5 K MVA 5 ? VAL N-METHYLVALINE
19 K SAR 10 K SAR 10 ? GLY SARCOSINE
20 K MVA 11 K MVA 11 ? VAL N-METHYLVALINE
21 L SAR 4 L SAR 4 ? GLY SARCOSINE
22 L MVA 5 L MVA 5 ? VAL N-METHYLVALINE
23 L SAR 10 L SAR 10 ? GLY SARCOSINE
24 L MVA 11 L MVA 11 ? VAL N-METHYLVALINE
25 M BRU 5 M BRU 5 ? DU ?
26 N BRU 5 N BRU 5 ? DU ?
27 O BRU 5 O BRU 5 ? DU ?
28 P BRU 5 P BRU 5 ? DU ?
29 Q SAR 4 Q SAR 4 ? GLY SARCOSINE
30 Q MVA 5 Q MVA 5 ? VAL N-METHYLVALINE
31 Q SAR 10 Q SAR 10 ? GLY SARCOSINE
32 Q MVA 11 Q MVA 11 ? VAL N-METHYLVALINE
33 R SAR 4 R SAR 4 ? GLY SARCOSINE
34 R MVA 5 R MVA 5 ? VAL N-METHYLVALINE
35 R SAR 10 R SAR 10 ? GLY SARCOSINE
36 R MVA 11 R MVA 11 ? VAL N-METHYLVALINE
37 S BRU 5 S BRU 5 ? DU ?
38 T BRU 5 T BRU 5 ? DU ?
39 U BRU 5 U BRU 5 ? DU ?
40 V BRU 5 V BRU 5 ? DU ?
41 W SAR 4 W SAR 4 ? GLY SARCOSINE
42 W MVA 5 W MVA 5 ? VAL N-METHYLVALINE
43 W SAR 10 W SAR 10 ? GLY SARCOSINE
44 W MVA 11 W MVA 11 ? VAL N-METHYLVALINE
45 X SAR 4 X SAR 4 ? GLY SARCOSINE
46 X MVA 5 X MVA 5 ? VAL N-METHYLVALINE
47 X SAR 10 X SAR 10 ? GLY SARCOSINE
48 X MVA 11 X MVA 11 ? VAL N-METHYLVALINE
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A DT 1 ? A DT 1
2 1 Y 1 B DT 1 ? B DT 1
3 1 Y 1 B DT 2 ? B DT 2
4 1 Y 1 C DT 1 ? C DT 1
5 1 Y 1 D DT 1 ? D DT 1
6 1 Y 1 G DT 1 ? G DT 1
7 1 Y 1 H DT 1 ? H DT 1
8 1 Y 1 H DT 2 ? H DT 2
9 1 Y 1 I DT 1 ? I DT 1
10 1 Y 1 J DT 1 ? J DT 1
11 1 Y 1 M DT 1 ? M DT 1
12 1 Y 1 N DT 1 ? N DT 1
13 1 Y 1 O DT 1 ? O DT 1
14 1 Y 1 P DT 1 ? P DT 1
15 1 Y 1 S DT 1 ? S DT 1
16 1 Y 1 T DT 1 ? T DT 1
17 1 Y 1 U DT 1 ? U DT 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BRU N1 N N N 1
BRU C2 C N N 2
BRU N3 N N N 3
BRU C4 C N N 4
BRU C5 C N N 5
BRU C6 C N N 6
BRU O2 O N N 7
BRU O4 O N N 8
BRU BR BR N N 9
BRU "C1'" C N R 10
BRU "C2'" C N N 11
BRU "C3'" C N S 12
BRU "C4'" C N R 13
BRU "O3'" O N N 14
BRU "O4'" O N N 15
BRU "C5'" C N N 16
BRU "O5'" O N N 17
BRU P P N N 18
BRU OP1 O N N 19
BRU OP2 O N N 20
BRU OP3 O N N 21
BRU HN3 H N N 22
BRU H6 H N N 23
BRU "H1'" H N N 24
BRU "H2'" H N N 25
BRU "H2''" H N N 26
BRU "H3'" H N N 27
BRU "H4'" H N N 28
BRU "HO3'" H N N 29
BRU "H5'" H N N 30
BRU "H5''" H N N 31
BRU HOP2 H N N 32
BRU HOP3 H N N 33
DA OP3 O N N 34
DA P P N N 35
DA OP1 O N N 36
DA OP2 O N N 37
DA "O5'" O N N 38
DA "C5'" C N N 39
DA "C4'" C N R 40
DA "O4'" O N N 41
DA "C3'" C N S 42
DA "O3'" O N N 43
DA "C2'" C N N 44
DA "C1'" C N R 45
DA N9 N Y N 46
DA C8 C Y N 47
DA N7 N Y N 48
DA C5 C Y N 49
DA C6 C Y N 50
DA N6 N N N 51
DA N1 N Y N 52
DA C2 C Y N 53
DA N3 N Y N 54
DA C4 C Y N 55
DA HOP3 H N N 56
DA HOP2 H N N 57
DA "H5'" H N N 58
DA "H5''" H N N 59
DA "H4'" H N N 60
DA "H3'" H N N 61
DA "HO3'" H N N 62
DA "H2'" H N N 63
DA "H2''" H N N 64
DA "H1'" H N N 65
DA H8 H N N 66
DA H61 H N N 67
DA H62 H N N 68
DA H2 H N N 69
DG OP3 O N N 70
DG P P N N 71
DG OP1 O N N 72
DG OP2 O N N 73
DG "O5'" O N N 74
DG "C5'" C N N 75
DG "C4'" C N R 76
DG "O4'" O N N 77
DG "C3'" C N S 78
DG "O3'" O N N 79
DG "C2'" C N N 80
DG "C1'" C N R 81
DG N9 N Y N 82
DG C8 C Y N 83
DG N7 N Y N 84
DG C5 C Y N 85
DG C6 C N N 86
DG O6 O N N 87
DG N1 N N N 88
DG C2 C N N 89
DG N2 N N N 90
DG N3 N N N 91
DG C4 C Y N 92
DG HOP3 H N N 93
DG HOP2 H N N 94
DG "H5'" H N N 95
DG "H5''" H N N 96
DG "H4'" H N N 97
DG "H3'" H N N 98
DG "HO3'" H N N 99
DG "H2'" H N N 100
DG "H2''" H N N 101
DG "H1'" H N N 102
DG H8 H N N 103
DG H1 H N N 104
DG H21 H N N 105
DG H22 H N N 106
DT OP3 O N N 107
DT P P N N 108
DT OP1 O N N 109
DT OP2 O N N 110
DT "O5'" O N N 111
DT "C5'" C N N 112
DT "C4'" C N R 113
DT "O4'" O N N 114
DT "C3'" C N S 115
DT "O3'" O N N 116
DT "C2'" C N N 117
DT "C1'" C N R 118
DT N1 N N N 119
DT C2 C N N 120
DT O2 O N N 121
DT N3 N N N 122
DT C4 C N N 123
DT O4 O N N 124
DT C5 C N N 125
DT C7 C N N 126
DT C6 C N N 127
DT HOP3 H N N 128
DT HOP2 H N N 129
DT "H5'" H N N 130
DT "H5''" H N N 131
DT "H4'" H N N 132
DT "H3'" H N N 133
DT "HO3'" H N N 134
DT "H2'" H N N 135
DT "H2''" H N N 136
DT "H1'" H N N 137
DT H3 H N N 138
DT H71 H N N 139
DT H72 H N N 140
DT H73 H N N 141
DT H6 H N N 142
DVA N N N N 143
DVA CA C N R 144
DVA CB C N N 145
DVA CG1 C N N 146
DVA CG2 C N N 147
DVA C C N N 148
DVA O O N N 149
DVA OXT O N N 150
DVA H H N N 151
DVA H2 H N N 152
DVA HA H N N 153
DVA HB H N N 154
DVA HG11 H N N 155
DVA HG12 H N N 156
DVA HG13 H N N 157
DVA HG21 H N N 158
DVA HG22 H N N 159
DVA HG23 H N N 160
DVA HXT H N N 161
HOH O O N N 162
HOH H1 H N N 163
HOH H2 H N N 164
MVA N N N N 165
MVA CN C N N 166
MVA CA C N S 167
MVA CB C N N 168
MVA CG1 C N N 169
MVA CG2 C N N 170
MVA C C N N 171
MVA O O N N 172
MVA OXT O N N 173
MVA H H N N 174
MVA HN1 H N N 175
MVA HN2 H N N 176
MVA HN3 H N N 177
MVA HA H N N 178
MVA HB H N N 179
MVA HG11 H N N 180
MVA HG12 H N N 181
MVA HG13 H N N 182
MVA HG21 H N N 183
MVA HG22 H N N 184
MVA HG23 H N N 185
MVA HXT H N N 186
PRO N N N N 187
PRO CA C N S 188
PRO C C N N 189
PRO O O N N 190
PRO CB C N N 191
PRO CG C N N 192
PRO CD C N N 193
PRO OXT O N N 194
PRO H H N N 195
PRO HA H N N 196
PRO HB2 H N N 197
PRO HB3 H N N 198
PRO HG2 H N N 199
PRO HG3 H N N 200
PRO HD2 H N N 201
PRO HD3 H N N 202
PRO HXT H N N 203
PX1 C1 C N N 204
PX1 C0 C N N 205
PX1 O1 O N N 206
PX1 C2 C N N 207
PX1 N2 N N N 208
PX1 C3 C N N 209
PX1 O3 O N N 210
PX1 C4 C N N 211
PX1 O5 O N N 212
PX1 C6 C Y N 213
PX1 C7 C Y N 214
PX1 C8 C Y N 215
PX1 C9 C Y N 216
PX1 "C0'" C N N 217
PX1 "O1'" O N N 218
PX1 N10 N N N 219
PX1 C11 C N N 220
PX1 C12 C N N 221
PX1 C13 C Y N 222
PX1 C14 C Y N 223
PX1 C15 C N N 224
PX1 C16 C N N 225
PX1 N7 N N N 226
PX1 H4 H N N 227
PX1 H3 H N N 228
PX1 H8 H N N 229
PX1 H151 H N N 230
PX1 H152 H N N 231
PX1 H153 H N N 232
PX1 H161 H N N 233
PX1 H162 H N N 234
PX1 H163 H N N 235
PX1 H7N1 H N N 236
PX1 H7N2 H N N 237
PX1 "OXT'" O N N 238
PX1 OXT O N N 239
PX1 "HXT'" H N N 240
PX1 HXT H N N 241
PXZ C1 C N N 242
PXZ C0 C N N 243
PXZ O1 O N N 244
PXZ C2 C N N 245
PXZ N2 N N N 246
PXZ C3 C N N 247
PXZ O3 O N N 248
PXZ C4 C N N 249
PXZ O5 O N N 250
PXZ C6 C Y N 251
PXZ C7 C Y N 252
PXZ C8 C Y N 253
PXZ C9 C Y N 254
PXZ "C0'" C N N 255
PXZ "O1'" O N N 256
PXZ N10 N N N 257
PXZ C11 C N N 258
PXZ C12 C N N 259
PXZ C13 C Y N 260
PXZ C14 C Y N 261
PXZ C15 C N N 262
PXZ C16 C N N 263
PXZ HN21 H N N 264
PXZ HN22 H N N 265
PXZ H7 H N N 266
PXZ H8 H N N 267
PXZ H151 H N N 268
PXZ H152 H N N 269
PXZ H153 H N N 270
PXZ H161 H N N 271
PXZ H162 H N N 272
PXZ H163 H N N 273
PXZ "OXT'" O N N 274
PXZ OXT O N N 275
PXZ "HXT'" H N N 276
PXZ HXT H N N 277
SAR N N N N 278
SAR CA C N N 279
SAR C C N N 280
SAR O O N N 281
SAR CN C N N 282
SAR OXT O N N 283
SAR H H N N 284
SAR HA2 H N N 285
SAR HA3 H N N 286
SAR HN1 H N N 287
SAR HN2 H N N 288
SAR HN3 H N N 289
SAR HXT H N N 290
THR N N N N 291
THR CA C N S 292
THR C C N N 293
THR O O N N 294
THR CB C N R 295
THR OG1 O N N 296
THR CG2 C N N 297
THR OXT O N N 298
THR H H N N 299
THR H2 H N N 300
THR HA H N N 301
THR HB H N N 302
THR HG1 H N N 303
THR HG21 H N N 304
THR HG22 H N N 305
THR HG23 H N N 306
THR HXT H N N 307
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BRU N1 C2 sing N N 1
BRU N1 C6 sing N N 2
BRU N1 "C1'" sing N N 3
BRU C2 N3 sing N N 4
BRU C2 O2 doub N N 5
BRU N3 C4 sing N N 6
BRU N3 HN3 sing N N 7
BRU C4 C5 sing N N 8
BRU C4 O4 doub N N 9
BRU C5 C6 doub N N 10
BRU C5 BR sing N N 11
BRU C6 H6 sing N N 12
BRU "C1'" "C2'" sing N N 13
BRU "C1'" "O4'" sing N N 14
BRU "C1'" "H1'" sing N N 15
BRU "C2'" "C3'" sing N N 16
BRU "C2'" "H2'" sing N N 17
BRU "C2'" "H2''" sing N N 18
BRU "C3'" "C4'" sing N N 19
BRU "C3'" "O3'" sing N N 20
BRU "C3'" "H3'" sing N N 21
BRU "C4'" "O4'" sing N N 22
BRU "C4'" "C5'" sing N N 23
BRU "C4'" "H4'" sing N N 24
BRU "O3'" "HO3'" sing N N 25
BRU "C5'" "O5'" sing N N 26
BRU "C5'" "H5'" sing N N 27
BRU "C5'" "H5''" sing N N 28
BRU "O5'" P sing N N 29
BRU P OP1 doub N N 30
BRU P OP2 sing N N 31
BRU P OP3 sing N N 32
BRU OP2 HOP2 sing N N 33
BRU OP3 HOP3 sing N N 34
DA OP3 P sing N N 35
DA OP3 HOP3 sing N N 36
DA P OP1 doub N N 37
DA P OP2 sing N N 38
DA P "O5'" sing N N 39
DA OP2 HOP2 sing N N 40
DA "O5'" "C5'" sing N N 41
DA "C5'" "C4'" sing N N 42
DA "C5'" "H5'" sing N N 43
DA "C5'" "H5''" sing N N 44
DA "C4'" "O4'" sing N N 45
DA "C4'" "C3'" sing N N 46
DA "C4'" "H4'" sing N N 47
DA "O4'" "C1'" sing N N 48
DA "C3'" "O3'" sing N N 49
DA "C3'" "C2'" sing N N 50
DA "C3'" "H3'" sing N N 51
DA "O3'" "HO3'" sing N N 52
DA "C2'" "C1'" sing N N 53
DA "C2'" "H2'" sing N N 54
DA "C2'" "H2''" sing N N 55
DA "C1'" N9 sing N N 56
DA "C1'" "H1'" sing N N 57
DA N9 C8 sing Y N 58
DA N9 C4 sing Y N 59
DA C8 N7 doub Y N 60
DA C8 H8 sing N N 61
DA N7 C5 sing Y N 62
DA C5 C6 sing Y N 63
DA C5 C4 doub Y N 64
DA C6 N6 sing N N 65
DA C6 N1 doub Y N 66
DA N6 H61 sing N N 67
DA N6 H62 sing N N 68
DA N1 C2 sing Y N 69
DA C2 N3 doub Y N 70
DA C2 H2 sing N N 71
DA N3 C4 sing Y N 72
DG OP3 P sing N N 73
DG OP3 HOP3 sing N N 74
DG P OP1 doub N N 75
DG P OP2 sing N N 76
DG P "O5'" sing N N 77
DG OP2 HOP2 sing N N 78
DG "O5'" "C5'" sing N N 79
DG "C5'" "C4'" sing N N 80
DG "C5'" "H5'" sing N N 81
DG "C5'" "H5''" sing N N 82
DG "C4'" "O4'" sing N N 83
DG "C4'" "C3'" sing N N 84
DG "C4'" "H4'" sing N N 85
DG "O4'" "C1'" sing N N 86
DG "C3'" "O3'" sing N N 87
DG "C3'" "C2'" sing N N 88
DG "C3'" "H3'" sing N N 89
DG "O3'" "HO3'" sing N N 90
DG "C2'" "C1'" sing N N 91
DG "C2'" "H2'" sing N N 92
DG "C2'" "H2''" sing N N 93
DG "C1'" N9 sing N N 94
DG "C1'" "H1'" sing N N 95
DG N9 C8 sing Y N 96
DG N9 C4 sing Y N 97
DG C8 N7 doub Y N 98
DG C8 H8 sing N N 99
DG N7 C5 sing Y N 100
DG C5 C6 sing N N 101
DG C5 C4 doub Y N 102
DG C6 O6 doub N N 103
DG C6 N1 sing N N 104
DG N1 C2 sing N N 105
DG N1 H1 sing N N 106
DG C2 N2 sing N N 107
DG C2 N3 doub N N 108
DG N2 H21 sing N N 109
DG N2 H22 sing N N 110
DG N3 C4 sing N N 111
DT OP3 P sing N N 112
DT OP3 HOP3 sing N N 113
DT P OP1 doub N N 114
DT P OP2 sing N N 115
DT P "O5'" sing N N 116
DT OP2 HOP2 sing N N 117
DT "O5'" "C5'" sing N N 118
DT "C5'" "C4'" sing N N 119
DT "C5'" "H5'" sing N N 120
DT "C5'" "H5''" sing N N 121
DT "C4'" "O4'" sing N N 122
DT "C4'" "C3'" sing N N 123
DT "C4'" "H4'" sing N N 124
DT "O4'" "C1'" sing N N 125
DT "C3'" "O3'" sing N N 126
DT "C3'" "C2'" sing N N 127
DT "C3'" "H3'" sing N N 128
DT "O3'" "HO3'" sing N N 129
DT "C2'" "C1'" sing N N 130
DT "C2'" "H2'" sing N N 131
DT "C2'" "H2''" sing N N 132
DT "C1'" N1 sing N N 133
DT "C1'" "H1'" sing N N 134
DT N1 C2 sing N N 135
DT N1 C6 sing N N 136
DT C2 O2 doub N N 137
DT C2 N3 sing N N 138
DT N3 C4 sing N N 139
DT N3 H3 sing N N 140
DT C4 O4 doub N N 141
DT C4 C5 sing N N 142
DT C5 C7 sing N N 143
DT C5 C6 doub N N 144
DT C7 H71 sing N N 145
DT C7 H72 sing N N 146
DT C7 H73 sing N N 147
DT C6 H6 sing N N 148
DVA N CA sing N N 149
DVA N H sing N N 150
DVA N H2 sing N N 151
DVA CA CB sing N N 152
DVA CA C sing N N 153
DVA CA HA sing N N 154
DVA CB CG1 sing N N 155
DVA CB CG2 sing N N 156
DVA CB HB sing N N 157
DVA CG1 HG11 sing N N 158
DVA CG1 HG12 sing N N 159
DVA CG1 HG13 sing N N 160
DVA CG2 HG21 sing N N 161
DVA CG2 HG22 sing N N 162
DVA CG2 HG23 sing N N 163
DVA C O doub N N 164
DVA C OXT sing N N 165
DVA OXT HXT sing N N 166
HOH O H1 sing N N 167
HOH O H2 sing N N 168
MVA N CN sing N N 169
MVA N CA sing N N 170
MVA N H sing N N 171
MVA CN HN1 sing N N 172
MVA CN HN2 sing N N 173
MVA CN HN3 sing N N 174
MVA CA CB sing N N 175
MVA CA C sing N N 176
MVA CA HA sing N N 177
MVA CB CG1 sing N N 178
MVA CB CG2 sing N N 179
MVA CB HB sing N N 180
MVA CG1 HG11 sing N N 181
MVA CG1 HG12 sing N N 182
MVA CG1 HG13 sing N N 183
MVA CG2 HG21 sing N N 184
MVA CG2 HG22 sing N N 185
MVA CG2 HG23 sing N N 186
MVA C O doub N N 187
MVA C OXT sing N N 188
MVA OXT HXT sing N N 189
PRO N CA sing N N 190
PRO N CD sing N N 191
PRO N H sing N N 192
PRO CA C sing N N 193
PRO CA CB sing N N 194
PRO CA HA sing N N 195
PRO C O doub N N 196
PRO C OXT sing N N 197
PRO CB CG sing N N 198
PRO CB HB2 sing N N 199
PRO CB HB3 sing N N 200
PRO CG CD sing N N 201
PRO CG HG2 sing N N 202
PRO CG HG3 sing N N 203
PRO CD HD2 sing N N 204
PRO CD HD3 sing N N 205
PRO OXT HXT sing N N 206
PX1 C1 C0 doub N N 207
PX1 C1 C2 sing N N 208
PX1 C1 C11 sing N N 209
PX1 C0 O1 sing N N 210
PX1 O1 H4 sing N N 211
PX1 C2 N2 doub N N 212
PX1 C2 C3 sing N N 213
PX1 N2 H3 sing N N 214
PX1 C3 O3 doub N N 215
PX1 C3 C4 sing N N 216
PX1 C4 C12 doub N N 217
PX1 C4 C15 sing N N 218
PX1 O5 C12 sing N N 219
PX1 O5 C13 sing N N 220
PX1 C6 C7 doub Y N 221
PX1 C6 C13 sing Y N 222
PX1 C6 C16 sing N N 223
PX1 C7 C8 sing Y N 224
PX1 C7 N7 sing N N 225
PX1 C8 C9 doub Y N 226
PX1 C8 H8 sing N N 227
PX1 C9 "C0'" sing N N 228
PX1 C9 C14 sing Y N 229
PX1 "C0'" "O1'" doub N N 230
PX1 N10 C11 doub N N 231
PX1 N10 C14 sing N N 232
PX1 C11 C12 sing N N 233
PX1 C13 C14 doub Y N 234
PX1 C15 H151 sing N N 235
PX1 C15 H152 sing N N 236
PX1 C15 H153 sing N N 237
PX1 C16 H161 sing N N 238
PX1 C16 H162 sing N N 239
PX1 C16 H163 sing N N 240
PX1 N7 H7N1 sing N N 241
PX1 N7 H7N2 sing N N 242
PX1 "C0'" "OXT'" sing N N 243
PX1 C0 OXT sing N N 244
PX1 "OXT'" "HXT'" sing N N 245
PX1 OXT HXT sing N N 246
PXZ C1 C0 sing N N 247
PXZ C1 C2 doub N N 248
PXZ C1 C11 sing N N 249
PXZ C0 O1 doub N N 250
PXZ C2 N2 sing N N 251
PXZ C2 C3 sing N N 252
PXZ N2 HN21 sing N N 253
PXZ N2 HN22 sing N N 254
PXZ C3 O3 doub N N 255
PXZ C3 C4 sing N N 256
PXZ C4 C12 doub N N 257
PXZ C4 C15 sing N N 258
PXZ O5 C12 sing N N 259
PXZ O5 C13 sing N N 260
PXZ C6 C7 doub Y N 261
PXZ C6 C13 sing Y N 262
PXZ C6 C16 sing N N 263
PXZ C7 C8 sing Y N 264
PXZ C7 H7 sing N N 265
PXZ C8 C9 doub Y N 266
PXZ C8 H8 sing N N 267
PXZ C9 "C0'" sing N N 268
PXZ C9 C14 sing Y N 269
PXZ "C0'" "O1'" doub N N 270
PXZ N10 C11 doub N N 271
PXZ N10 C14 sing N N 272
PXZ C11 C12 sing N N 273
PXZ C13 C14 doub Y N 274
PXZ C15 H151 sing N N 275
PXZ C15 H152 sing N N 276
PXZ C15 H153 sing N N 277
PXZ C16 H161 sing N N 278
PXZ C16 H162 sing N N 279
PXZ C16 H163 sing N N 280
PXZ "C0'" "OXT'" sing N N 281
PXZ C0 OXT sing N N 282
PXZ "OXT'" "HXT'" sing N N 283
PXZ OXT HXT sing N N 284
SAR N CA sing N N 285
SAR N CN sing N N 286
SAR N H sing N N 287
SAR CA C sing N N 288
SAR CA HA2 sing N N 289
SAR CA HA3 sing N N 290
SAR C O doub N N 291
SAR C OXT sing N N 292
SAR CN HN1 sing N N 293
SAR CN HN2 sing N N 294
SAR CN HN3 sing N N 295
SAR OXT HXT sing N N 296
THR N CA sing N N 297
THR N H sing N N 298
THR N H2 sing N N 299
THR CA C sing N N 300
THR CA CB sing N N 301
THR CA HA sing N N 302
THR C O doub N N 303
THR C OXT sing N N 304
THR CB OG1 sing N N 305
THR CB CG2 sing N N 306
THR CB HB sing N N 307
THR OG1 HG1 sing N N 308
THR CG2 HG21 sing N N 309
THR CG2 HG22 sing N N 310
THR CG2 HG23 sing N N 311
THR OXT HXT sing N N 312
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
1UNJ 'double helix'
1UNJ 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A BRU 5 1_555 C DG 4 1_555 2.367 -0.537 0.812 -6.693 -4.679 11.019 1 A_BRU5:DG4_C A 5 ? C 4 ? 28 1
1 A DT 6 1_555 C DA 3 1_555 -0.471 -0.320 0.377 7.296 -13.931 -7.479 2 A_DT6:DA3_C A 6 ? C 3 ? 20 1
1 B DA 3 1_555 D DT 6 1_555 0.150 -0.188 0.103 -8.912 -16.137 4.634 3 B_DA3:DT6_D B 3 ? D 6 ? 20 1
1 B DG 4 1_555 D BRU 5 1_555 -2.102 -0.702 0.281 4.075 -1.997 0.770 4 B_DG4:BRU5_D B 4 ? D 5 ? 28 1
1 B BRU 5 1_555 D DG 4 1_555 2.058 -0.736 0.652 -6.310 10.468 -14.079 5 B_BRU5:DG4_D B 5 ? D 4 ? 28 1
1 G DT 2 1_555 D DA 3 1_555 -0.273 -0.282 0.523 -12.801 15.976 -6.769 6 G_DT2:DA3_D G 2 ? D 3 ? 20 1
1 G DA 3 1_555 D DT 2 1_555 -0.203 0.040 0.288 10.098 2.606 0.196 7 G_DA3:DT2_D G 3 ? D 2 ? 20 1
1 G DG 4 1_555 B DT 6 1_555 -2.096 -0.202 0.321 -6.088 11.545 3.087 8 G_DG4:DT6_B G 4 ? B 6 ? 28 1
1 G BRU 5 1_555 I DG 4 1_555 1.876 -0.590 0.797 -10.690 -3.734 7.307 9 G_BRU5:DG4_I G 5 ? I 4 ? 28 1
1 G DT 6 1_555 I DA 3 1_555 0.096 -0.181 -0.021 3.885 -13.505 1.349 10 G_DT6:DA3_I G 6 ? I 3 ? 20 1
1 H DA 3 1_555 J DT 6 1_555 -0.328 0.072 -0.043 -14.507 -15.650 7.021 11 H_DA3:DT6_J H 3 ? J 6 ? 20 1
1 H DG 4 1_555 J BRU 5 1_555 -2.226 -0.197 0.202 -1.202 -1.655 8.984 12 H_DG4:BRU5_J H 4 ? J 5 ? 28 1
1 H BRU 5 1_555 J DG 4 1_555 2.047 -0.378 0.550 -9.884 9.132 -8.540 13 H_BRU5:DG4_J H 5 ? J 4 ? 28 1
1 M BRU 5 1_555 O DG 4 1_555 1.932 -0.636 0.645 -9.329 -4.039 4.480 14 M_BRU5:DG4_O M 5 ? O 4 ? 28 1
1 M DT 6 1_555 O DA 3 1_555 -0.154 -0.048 0.213 3.464 -15.717 0.349 15 M_DT6:DA3_O M 6 ? O 3 ? 20 1
1 N DA 3 1_555 P DT 6 1_555 -0.380 -0.271 0.076 -7.573 -15.816 3.879 16 N_DA3:DT6_P N 3 ? P 6 ? 20 1
1 N DG 4 1_555 P BRU 5 1_555 -2.155 -0.486 0.428 5.506 -4.413 0.985 17 N_DG4:BRU5_P N 4 ? P 5 ? 28 1
1 N BRU 5 1_555 P DG 4 1_555 2.269 -0.719 0.788 -7.851 9.770 -10.080 18 N_BRU5:DG4_P N 5 ? P 4 ? 28 1
1 S DT 2 1_555 P DA 3 1_555 -0.252 -0.213 0.149 -3.678 9.269 0.067 19 S_DT2:DA3_P S 2 ? P 3 ? 20 1
1 S DA 3 1_555 P DT 2 1_555 0.117 -0.160 0.380 11.211 -5.257 2.510 20 S_DA3:DT2_P S 3 ? P 2 ? 20 1
1 S DG 4 1_555 N DT 6 1_555 -2.425 -0.853 0.768 -1.891 9.357 1.804 21 S_DG4:DT6_N S 4 ? N 6 ? 28 1
1 S BRU 5 1_555 U DG 4 1_555 1.866 -0.458 0.713 -8.104 0.338 6.287 22 S_BRU5:DG4_U S 5 ? U 4 ? 28 1
1 S DT 6 1_555 U DA 3 1_555 0.483 -0.206 0.290 4.940 -13.249 3.959 23 S_DT6:DA3_U S 6 ? U 3 ? 20 1
1 T DA 3 1_555 V DT 6 1_555 0.059 -0.289 0.426 -8.164 -17.815 -0.444 24 T_DA3:DT6_V T 3 ? V 6 ? 20 1
1 T DG 4 1_555 V BRU 5 1_555 -1.980 -0.349 0.322 1.596 -3.159 9.003 25 T_DG4:BRU5_V T 4 ? V 5 ? 28 1
1 T BRU 5 1_555 V DG 4 1_555 2.030 -0.660 0.764 -12.960 7.781 -14.283 26 T_BRU5:DG4_V T 5 ? V 4 ? 28 1
1 V DT 1 1_555 V DA 3 1_555 -0.476 3.490 -0.568 6.606 -17.891 -75.195 27 V_DT1:DA3_V V 1 ? V 3 ? 23 3
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A BRU 5 1_555 C DG 4 1_555 A DT 6 1_555 C DA 3 1_555 -1.091 0.208 3.000 5.818 9.114 17.124 -3.076 5.447 2.325 27.346
-17.455 20.231 1 AA_BRU5DT6:DA3DG4_CC A 5 ? C 4 ? A 6 ? C 3 ?
1 A DT 6 1_555 C DA 3 1_555 B DA 3 1_555 D DT 6 1_555 0.547 1.778 4.123 1.546 -5.987 -24.012 -1.746 1.893 4.386 14.094
3.640 -24.785 2 AB_DT6DA3:DT6DA3_DC A 6 ? C 3 ? B 3 ? D 6 ?
1 B DA 3 1_555 D DT 6 1_555 B DG 4 1_555 D BRU 5 1_555 0.044 0.286 2.890 -3.979 14.935 14.491 -4.967 -1.650 2.178 45.507
12.125 21.156 3 BB_DA3DG4:BRU5DT6_DD B 3 ? D 6 ? B 4 ? D 5 ?
1 B BRU 5 1_555 D DG 4 1_555 G DT 2 1_555 D DA 3 1_555 -2.849 3.731 3.924 -10.983 7.892 39.495 4.060 2.354 5.128 11.284
15.704 41.659 4 BG_BRU5DT2:DA3DG4_DD B 5 ? D 4 ? G 2 ? D 3 ?
1 G DT 2 1_555 D DA 3 1_555 G DA 3 1_555 D DT 2 1_555 0.119 -1.214 2.796 1.327 -12.236 32.364 -0.296 -0.012 3.046 -21.028
-2.280 34.567 5 GG_DT2DA3:DT2DA3_DD G 2 ? D 3 ? G 3 ? D 2 ?
1 G DA 3 1_555 D DT 2 1_555 G DG 4 1_555 B DT 6 1_555 4.358 2.872 3.390 9.305 45.250 52.717 0.027 -3.332 4.949 42.951
-8.832 68.985 6 GG_DA3DG4:DT6DT2_BD G 3 ? D 2 ? G 4 ? B 6 ?
1 G BRU 5 1_555 I DG 4 1_555 G DT 6 1_555 I DA 3 1_555 -0.531 0.364 2.778 8.389 12.607 20.850 -2.211 3.209 2.263 30.222
-20.111 25.720 7 GG_BRU5DT6:DA3DG4_II G 5 ? I 4 ? G 6 ? I 3 ?
1 G DT 6 1_555 I DA 3 1_555 H DA 3 1_555 J DT 6 1_555 0.072 1.767 4.274 0.860 -8.567 -28.424 -0.950 0.392 4.595 16.960
1.703 -29.674 8 GH_DT6DA3:DT6DA3_JI G 6 ? I 3 ? H 3 ? J 6 ?
1 H DA 3 1_555 J DT 6 1_555 H DG 4 1_555 J BRU 5 1_555 0.329 0.525 2.915 -5.448 14.225 17.039 -3.454 -2.662 2.430 39.286
15.047 22.818 9 HH_DA3DG4:BRU5DT6_JJ H 3 ? J 6 ? H 4 ? J 5 ?
1 M BRU 5 1_555 O DG 4 1_555 M DT 6 1_555 O DA 3 1_555 -0.562 0.399 2.956 6.209 11.903 20.385 -2.470 3.113 2.529 29.816
-15.553 24.370 10 MM_BRU5DT6:DA3DG4_OO M 5 ? O 4 ? M 6 ? O 3 ?
1 M DT 6 1_555 O DA 3 1_555 N DA 3 1_555 P DT 6 1_555 0.281 1.750 3.953 1.053 -9.003 -27.163 -0.902 0.877 4.287 18.526
2.166 -28.608 11 MN_DT6DA3:DT6DA3_PO M 6 ? O 3 ? N 3 ? P 6 ?
1 N DA 3 1_555 P DT 6 1_555 N DG 4 1_555 P BRU 5 1_555 0.165 0.237 2.934 -6.903 16.747 15.334 -4.566 -2.523 2.025 46.293
19.084 23.691 12 NN_DA3DG4:BRU5DT6_PP N 3 ? P 6 ? N 4 ? P 5 ?
1 N BRU 5 1_555 P DG 4 1_555 S DT 2 1_555 P DA 3 1_555 -2.484 3.704 3.402 -5.792 5.066 38.598 4.803 2.888 4.152 7.572
8.657 39.328 13 NS_BRU5DT2:DA3DG4_PP N 5 ? P 4 ? S 2 ? P 3 ?
1 S DT 2 1_555 P DA 3 1_555 S DA 3 1_555 P DT 2 1_555 -0.052 -0.902 3.120 -0.433 -8.449 34.568 -0.261 0.022 3.244 -13.962
0.716 35.557 14 SS_DT2DA3:DT2DA3_PP S 2 ? P 3 ? S 3 ? P 2 ?
1 S DA 3 1_555 P DT 2 1_555 S DG 4 1_555 N DT 6 1_555 4.290 3.280 3.019 8.485 37.922 48.547 0.727 -3.643 4.886 39.651
-8.872 61.439 15 SS_DA3DG4:DT6DT2_NP S 3 ? P 2 ? S 4 ? N 6 ?
1 S DG 4 1_555 N DT 6 1_555 S BRU 5 1_555 U DG 4 1_555 0.480 2.202 7.149 -2.503 3.188 21.863 3.035 -3.344 7.291 8.314
6.528 22.231 16 SS_DG4BRU5:DG4DT6_UN S 4 ? N 6 ? S 5 ? U 4 ?
1 S BRU 5 1_555 U DG 4 1_555 S DT 6 1_555 U DA 3 1_555 -0.291 0.053 2.965 7.549 8.114 24.409 -1.776 2.387 2.642 18.047
-16.792 26.773 17 SS_BRU5DT6:DA3DG4_UU S 5 ? U 4 ? S 6 ? U 3 ?
1 S DT 6 1_555 U DA 3 1_555 T DA 3 1_555 V DT 6 1_555 -0.330 1.578 4.017 -1.287 -5.457 -30.535 -1.619 -0.931 4.212 10.253
-2.418 -31.033 18 ST_DT6DA3:DT6DA3_VU S 6 ? U 3 ? T 3 ? V 6 ?
1 T DA 3 1_555 V DT 6 1_555 T DG 4 1_555 V BRU 5 1_555 0.918 0.673 3.136 -0.166 13.150 15.149 -4.407 -2.718 2.808 41.167
0.519 20.036 19 TT_DA3DG4:BRU5DT6_VV T 3 ? V 6 ? T 4 ? V 5 ?
1 T BRU 5 1_555 V DG 4 1_555 V DT 1 1_555 V DA 3 1_555 -2.862 2.438 -2.084 132.602 106.502 -53.466 -0.760 -2.011 -0.311 -54.958
68.426 -171.139 20 TV_BRU5DT1:DA3DG4_VV T 5 ? V 4 ? V 1 ? V 3 ?
#
_atom_sites.entry_id 1UNJ
_atom_sites.fract_transf_matrix[1][1] 0.014041
_atom_sites.fract_transf_matrix[1][2] 0.008106
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.016213
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.009225
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
N
O
P
#
loop_