data_1UPW # _entry.id 1UPW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1UPW PDBE EBI-13703 WWPDB D_1290013703 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1P8D unspecified 'X-RAY CRYSTAL STRUCTURE OF LXR LIGAND BINDING DOMAIN WITH24(S),25-EPOXYCHOLESTEROL' PDB 1PQ6 unspecified 'HUMAN LXR BETA HORMONE RECEPTOR / GW3965 COMPLEX' PDB 1PQ9 unspecified 'HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317COMPLEX' PDB 1PQC unspecified 'HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317' PDB 1UPV unspecified 'CRYSTAL STRUCTURE OF THE HUMAN LIVER X RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UPW _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-10-13 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hoerer, S.' 1 ? 'Schmid, A.' 2 ? 'Heckel, A.' 3 ? 'Budzinski, R.M.' 4 ? 'Nar, H.' 5 ? # _citation.id primary _citation.title 'Crystal Structure of the Human Liver X Receptor Beta Ligand-Binding Domain in Complex with a Synthetic Agonist' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 334 _citation.page_first 853 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14643652 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2003.10.033 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hoerer, S.' 1 primary 'Schmid, A.' 2 primary 'Heckel, A.' 3 primary 'Budzinski, R.M.' 4 primary 'Nar, H.' 5 # _cell.entry_id 1UPW _cell.length_a 137.220 _cell.length_b 43.276 _cell.length_c 51.615 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UPW _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'OXYSTEROLS RECEPTOR LXR-BETA' 29416.621 1 ? ? 'LIGAND BINDING DOMAIN, RESIDUES 209-461' ? 2 non-polymer syn 'N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1-HYDROXY-1-(TRIFLUOROMETHYL)ETHYL]PHENYL}BENZENESULFONAMIDE' 481.333 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'LIVER X RECEPTOR BETA, NUCLEAR ORPHAN, RECEPTOR LXR-BETA, UBIQUITOUSLY-EXPRESSED NUCLEAR RECEPTOR, NUCLEAR RECEPTOR NER' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVD FAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLG LDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRL QDKKLPPLLSEIWDVHE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVD FAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLG LDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRL QDKKLPPLLSEIWDVHE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 GLN n 1 7 GLY n 1 8 SER n 1 9 GLY n 1 10 GLU n 1 11 GLY n 1 12 GLU n 1 13 GLY n 1 14 VAL n 1 15 GLN n 1 16 LEU n 1 17 THR n 1 18 ALA n 1 19 ALA n 1 20 GLN n 1 21 GLU n 1 22 LEU n 1 23 MET n 1 24 ILE n 1 25 GLN n 1 26 GLN n 1 27 LEU n 1 28 VAL n 1 29 ALA n 1 30 ALA n 1 31 GLN n 1 32 LEU n 1 33 GLN n 1 34 CYS n 1 35 ASN n 1 36 LYS n 1 37 ARG n 1 38 SER n 1 39 PHE n 1 40 SER n 1 41 ASP n 1 42 GLN n 1 43 PRO n 1 44 LYS n 1 45 VAL n 1 46 THR n 1 47 PRO n 1 48 TRP n 1 49 PRO n 1 50 LEU n 1 51 GLY n 1 52 ALA n 1 53 ASP n 1 54 PRO n 1 55 GLN n 1 56 SER n 1 57 ARG n 1 58 ASP n 1 59 ALA n 1 60 ARG n 1 61 GLN n 1 62 GLN n 1 63 ARG n 1 64 PHE n 1 65 ALA n 1 66 HIS n 1 67 PHE n 1 68 THR n 1 69 GLU n 1 70 LEU n 1 71 ALA n 1 72 ILE n 1 73 ILE n 1 74 SER n 1 75 VAL n 1 76 GLN n 1 77 GLU n 1 78 ILE n 1 79 VAL n 1 80 ASP n 1 81 PHE n 1 82 ALA n 1 83 LYS n 1 84 GLN n 1 85 VAL n 1 86 PRO n 1 87 GLY n 1 88 PHE n 1 89 LEU n 1 90 GLN n 1 91 LEU n 1 92 GLY n 1 93 ARG n 1 94 GLU n 1 95 ASP n 1 96 GLN n 1 97 ILE n 1 98 ALA n 1 99 LEU n 1 100 LEU n 1 101 LYS n 1 102 ALA n 1 103 SER n 1 104 THR n 1 105 ILE n 1 106 GLU n 1 107 ILE n 1 108 MET n 1 109 LEU n 1 110 LEU n 1 111 GLU n 1 112 THR n 1 113 ALA n 1 114 ARG n 1 115 ARG n 1 116 TYR n 1 117 ASN n 1 118 HIS n 1 119 GLU n 1 120 THR n 1 121 GLU n 1 122 CYS n 1 123 ILE n 1 124 THR n 1 125 PHE n 1 126 LEU n 1 127 LYS n 1 128 ASP n 1 129 PHE n 1 130 THR n 1 131 TYR n 1 132 SER n 1 133 LYS n 1 134 ASP n 1 135 ASP n 1 136 PHE n 1 137 HIS n 1 138 ARG n 1 139 ALA n 1 140 GLY n 1 141 LEU n 1 142 GLN n 1 143 VAL n 1 144 GLU n 1 145 PHE n 1 146 ILE n 1 147 ASN n 1 148 PRO n 1 149 ILE n 1 150 PHE n 1 151 GLU n 1 152 PHE n 1 153 SER n 1 154 ARG n 1 155 ALA n 1 156 MET n 1 157 ARG n 1 158 ARG n 1 159 LEU n 1 160 GLY n 1 161 LEU n 1 162 ASP n 1 163 ASP n 1 164 ALA n 1 165 GLU n 1 166 TYR n 1 167 ALA n 1 168 LEU n 1 169 LEU n 1 170 ILE n 1 171 ALA n 1 172 ILE n 1 173 ASN n 1 174 ILE n 1 175 PHE n 1 176 SER n 1 177 ALA n 1 178 ASP n 1 179 ARG n 1 180 PRO n 1 181 ASN n 1 182 VAL n 1 183 GLN n 1 184 GLU n 1 185 PRO n 1 186 GLY n 1 187 ARG n 1 188 VAL n 1 189 GLU n 1 190 ALA n 1 191 LEU n 1 192 GLN n 1 193 GLN n 1 194 PRO n 1 195 TYR n 1 196 VAL n 1 197 GLU n 1 198 ALA n 1 199 LEU n 1 200 LEU n 1 201 SER n 1 202 TYR n 1 203 THR n 1 204 ARG n 1 205 ILE n 1 206 LYS n 1 207 ARG n 1 208 PRO n 1 209 GLN n 1 210 ASP n 1 211 GLN n 1 212 LEU n 1 213 ARG n 1 214 PHE n 1 215 PRO n 1 216 ARG n 1 217 MET n 1 218 LEU n 1 219 MET n 1 220 LYS n 1 221 LEU n 1 222 VAL n 1 223 SER n 1 224 LEU n 1 225 ARG n 1 226 THR n 1 227 LEU n 1 228 SER n 1 229 SER n 1 230 VAL n 1 231 HIS n 1 232 SER n 1 233 GLU n 1 234 GLN n 1 235 VAL n 1 236 PHE n 1 237 ALA n 1 238 LEU n 1 239 ARG n 1 240 LEU n 1 241 GLN n 1 242 ASP n 1 243 LYS n 1 244 LYS n 1 245 LEU n 1 246 PRO n 1 247 PRO n 1 248 LEU n 1 249 LEU n 1 250 SER n 1 251 GLU n 1 252 ILE n 1 253 TRP n 1 254 ASP n 1 255 VAL n 1 256 HIS n 1 257 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET28A(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1UPW 1 ? ? 1UPW ? 2 UNP NRH2_HUMAN 1 ? ? P55055 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UPW A 1 ? 4 ? 1UPW 205 ? 208 ? 205 208 2 2 1UPW A 5 ? 257 ? P55055 209 ? 461 ? 209 461 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 444 non-polymer . 'N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1-HYDROXY-1-(TRIFLUOROMETHYL)ETHYL]PHENYL}BENZENESULFONAMIDE' ? 'C17 H12 F9 N O3 S' 481.333 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1UPW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.6 _exptl_crystal.density_percent_sol 52.3 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'RESERVOIR: 25% MPD, 10% PEG4K, 100 MM HEPES PH 7.5, 10 MM D PROTEIN: 4-8 MG/ML IN 20 MM TRIS PH 8.0, 100 MM NACL, 10 MM' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-10-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9166 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 0.9166 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UPW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 89.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 11049 _reflns.number_all ? _reflns.percent_possible_obs 89.9 _reflns.pdbx_Rmerge_I_obs 0.12100 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.800 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 92.4 _reflns_shell.Rmerge_I_obs 0.39500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.700 _reflns_shell.pdbx_redundancy 2.80 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UPW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10504 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 87.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.250 _refine.ls_R_factor_R_free 0.295 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 527 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.878 _refine.correlation_coeff_Fo_to_Fc_free 0.833 _refine.B_iso_mean 13.18 _refine.aniso_B[1][1] 2.22000 _refine.aniso_B[2][2] -1.87000 _refine.aniso_B[3][3] -0.35000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1FCY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.518 _refine.pdbx_overall_ESU_R_Free 0.321 _refine.overall_SU_ML 0.238 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.030 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1875 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1906 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1912 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.358 1.959 ? 2589 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.461 5.000 ? 230 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.095 0.200 ? 294 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1447 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.218 0.200 ? 825 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.149 0.200 ? 30 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.261 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.200 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.574 1.500 ? 1164 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.129 2.000 ? 1880 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.873 3.000 ? 748 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.243 4.500 ? 709 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.46 _refine_ls_shell.number_reflns_R_work 772 _refine_ls_shell.R_factor_R_work 0.2690 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3700 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1UPW _struct.title 'Crystal structure of the human Liver X receptor beta ligand binding domain in complex with a synthetic agonist' _struct.pdbx_descriptor 'OXYSTEROLS RECEPTOR LXR-BETA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UPW _struct_keywords.pdbx_keywords RECEPTOR _struct_keywords.text 'RECEPTOR, NUCLEAR HORMONE RECEPTOR, LIGAND BINDING DOMAIN, LIVER X RECEPTOR, TRANSCRIPTION FACTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 17 ? GLN A 33 ? THR A 221 GLN A 237 1 ? 17 HELX_P HELX_P2 2 SER A 56 ? LYS A 83 ? SER A 260 LYS A 287 1 ? 28 HELX_P HELX_P3 3 GLY A 87 ? LEU A 91 ? GLY A 291 LEU A 295 5 ? 5 HELX_P HELX_P4 4 GLY A 92 ? ARG A 115 ? GLY A 296 ARG A 319 1 ? 24 HELX_P HELX_P5 5 SER A 132 ? ALA A 139 ? SER A 336 ALA A 343 1 ? 8 HELX_P HELX_P6 6 GLN A 142 ? ARG A 157 ? GLN A 346 ARG A 361 1 ? 16 HELX_P HELX_P7 7 ARG A 158 ? GLY A 160 ? ARG A 362 GLY A 364 5 ? 3 HELX_P HELX_P8 8 ASP A 162 ? PHE A 175 ? ASP A 366 PHE A 379 1 ? 14 HELX_P HELX_P9 9 GLU A 184 ? ARG A 207 ? GLU A 388 ARG A 411 1 ? 24 HELX_P HELX_P10 10 LEU A 212 ? GLN A 241 ? LEU A 416 GLN A 445 1 ? 30 HELX_P HELX_P11 11 PRO A 246 ? ASP A 254 ? PRO A 450 ASP A 458 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 123 ? THR A 124 ? ILE A 327 THR A 328 AA 2 THR A 130 ? TYR A 131 ? THR A 334 TYR A 335 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 123 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 327 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TYR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 131 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 335 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE 444 A1462' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 PHE A 64 ? PHE A 268 . ? 1_555 ? 2 AC1 14 PHE A 67 ? PHE A 271 . ? 1_555 ? 3 AC1 14 LEU A 70 ? LEU A 274 . ? 1_555 ? 4 AC1 14 ALA A 71 ? ALA A 275 . ? 1_555 ? 5 AC1 14 MET A 108 ? MET A 312 . ? 1_555 ? 6 AC1 14 LEU A 109 ? LEU A 313 . ? 1_555 ? 7 AC1 14 THR A 112 ? THR A 316 . ? 1_555 ? 8 AC1 14 ILE A 123 ? ILE A 327 . ? 1_555 ? 9 AC1 14 LEU A 141 ? LEU A 345 . ? 1_555 ? 10 AC1 14 ILE A 149 ? ILE A 353 . ? 1_555 ? 11 AC1 14 HIS A 231 ? HIS A 435 . ? 1_555 ? 12 AC1 14 VAL A 235 ? VAL A 439 . ? 1_555 ? 13 AC1 14 LEU A 238 ? LEU A 442 . ? 1_555 ? 14 AC1 14 LEU A 245 ? LEU A 449 . ? 1_555 ? # _database_PDB_matrix.entry_id 1UPW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UPW _atom_sites.fract_transf_matrix[1][1] 0.007287 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023107 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019374 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 205 ? ? ? A . n A 1 2 SER 2 206 ? ? ? A . n A 1 3 HIS 3 207 ? ? ? A . n A 1 4 MET 4 208 ? ? ? A . n A 1 5 SER 5 209 ? ? ? A . n A 1 6 GLN 6 210 ? ? ? A . n A 1 7 GLY 7 211 ? ? ? A . n A 1 8 SER 8 212 ? ? ? A . n A 1 9 GLY 9 213 ? ? ? A . n A 1 10 GLU 10 214 ? ? ? A . n A 1 11 GLY 11 215 ? ? ? A . n A 1 12 GLU 12 216 ? ? ? A . n A 1 13 GLY 13 217 ? ? ? A . n A 1 14 VAL 14 218 ? ? ? A . n A 1 15 GLN 15 219 219 GLN GLN A . n A 1 16 LEU 16 220 220 LEU LEU A . n A 1 17 THR 17 221 221 THR THR A . n A 1 18 ALA 18 222 222 ALA ALA A . n A 1 19 ALA 19 223 223 ALA ALA A . n A 1 20 GLN 20 224 224 GLN GLN A . n A 1 21 GLU 21 225 225 GLU GLU A . n A 1 22 LEU 22 226 226 LEU LEU A . n A 1 23 MET 23 227 227 MET MET A . n A 1 24 ILE 24 228 228 ILE ILE A . n A 1 25 GLN 25 229 229 GLN GLN A . n A 1 26 GLN 26 230 230 GLN GLN A . n A 1 27 LEU 27 231 231 LEU LEU A . n A 1 28 VAL 28 232 232 VAL VAL A . n A 1 29 ALA 29 233 233 ALA ALA A . n A 1 30 ALA 30 234 234 ALA ALA A . n A 1 31 GLN 31 235 235 GLN GLN A . n A 1 32 LEU 32 236 236 LEU LEU A . n A 1 33 GLN 33 237 237 GLN GLN A . n A 1 34 CYS 34 238 ? ? ? A . n A 1 35 ASN 35 239 ? ? ? A . n A 1 36 LYS 36 240 ? ? ? A . n A 1 37 ARG 37 241 ? ? ? A . n A 1 38 SER 38 242 ? ? ? A . n A 1 39 PHE 39 243 ? ? ? A . n A 1 40 SER 40 244 ? ? ? A . n A 1 41 ASP 41 245 ? ? ? A . n A 1 42 GLN 42 246 ? ? ? A . n A 1 43 PRO 43 247 ? ? ? A . n A 1 44 LYS 44 248 ? ? ? A . n A 1 45 VAL 45 249 249 VAL VAL A . n A 1 46 THR 46 250 250 THR THR A . n A 1 47 PRO 47 251 251 PRO PRO A . n A 1 48 TRP 48 252 252 TRP TRP A . n A 1 49 PRO 49 253 253 PRO PRO A . n A 1 50 LEU 50 254 254 LEU LEU A . n A 1 51 GLY 51 255 255 GLY GLY A . n A 1 52 ALA 52 256 256 ALA ALA A . n A 1 53 ASP 53 257 257 ASP ASP A . n A 1 54 PRO 54 258 258 PRO PRO A . n A 1 55 GLN 55 259 259 GLN GLN A . n A 1 56 SER 56 260 260 SER SER A . n A 1 57 ARG 57 261 261 ARG ARG A . n A 1 58 ASP 58 262 262 ASP ASP A . n A 1 59 ALA 59 263 263 ALA ALA A . n A 1 60 ARG 60 264 264 ARG ARG A . n A 1 61 GLN 61 265 265 GLN GLN A . n A 1 62 GLN 62 266 266 GLN GLN A . n A 1 63 ARG 63 267 267 ARG ARG A . n A 1 64 PHE 64 268 268 PHE PHE A . n A 1 65 ALA 65 269 269 ALA ALA A . n A 1 66 HIS 66 270 270 HIS HIS A . n A 1 67 PHE 67 271 271 PHE PHE A . n A 1 68 THR 68 272 272 THR THR A . n A 1 69 GLU 69 273 273 GLU GLU A . n A 1 70 LEU 70 274 274 LEU LEU A . n A 1 71 ALA 71 275 275 ALA ALA A . n A 1 72 ILE 72 276 276 ILE ILE A . n A 1 73 ILE 73 277 277 ILE ILE A . n A 1 74 SER 74 278 278 SER SER A . n A 1 75 VAL 75 279 279 VAL VAL A . n A 1 76 GLN 76 280 280 GLN GLN A . n A 1 77 GLU 77 281 281 GLU GLU A . n A 1 78 ILE 78 282 282 ILE ILE A . n A 1 79 VAL 79 283 283 VAL VAL A . n A 1 80 ASP 80 284 284 ASP ASP A . n A 1 81 PHE 81 285 285 PHE PHE A . n A 1 82 ALA 82 286 286 ALA ALA A . n A 1 83 LYS 83 287 287 LYS LYS A . n A 1 84 GLN 84 288 288 GLN GLN A . n A 1 85 VAL 85 289 289 VAL VAL A . n A 1 86 PRO 86 290 290 PRO PRO A . n A 1 87 GLY 87 291 291 GLY GLY A . n A 1 88 PHE 88 292 292 PHE PHE A . n A 1 89 LEU 89 293 293 LEU LEU A . n A 1 90 GLN 90 294 294 GLN GLN A . n A 1 91 LEU 91 295 295 LEU LEU A . n A 1 92 GLY 92 296 296 GLY GLY A . n A 1 93 ARG 93 297 297 ARG ARG A . n A 1 94 GLU 94 298 298 GLU GLU A . n A 1 95 ASP 95 299 299 ASP ASP A . n A 1 96 GLN 96 300 300 GLN GLN A . n A 1 97 ILE 97 301 301 ILE ILE A . n A 1 98 ALA 98 302 302 ALA ALA A . n A 1 99 LEU 99 303 303 LEU LEU A . n A 1 100 LEU 100 304 304 LEU LEU A . n A 1 101 LYS 101 305 305 LYS LYS A . n A 1 102 ALA 102 306 306 ALA ALA A . n A 1 103 SER 103 307 307 SER SER A . n A 1 104 THR 104 308 308 THR THR A . n A 1 105 ILE 105 309 309 ILE ILE A . n A 1 106 GLU 106 310 310 GLU GLU A . n A 1 107 ILE 107 311 311 ILE ILE A . n A 1 108 MET 108 312 312 MET MET A . n A 1 109 LEU 109 313 313 LEU LEU A . n A 1 110 LEU 110 314 314 LEU LEU A . n A 1 111 GLU 111 315 315 GLU GLU A . n A 1 112 THR 112 316 316 THR THR A . n A 1 113 ALA 113 317 317 ALA ALA A . n A 1 114 ARG 114 318 318 ARG ARG A . n A 1 115 ARG 115 319 319 ARG ARG A . n A 1 116 TYR 116 320 320 TYR TYR A . n A 1 117 ASN 117 321 321 ASN ASN A . n A 1 118 HIS 118 322 322 HIS HIS A . n A 1 119 GLU 119 323 323 GLU GLU A . n A 1 120 THR 120 324 324 THR THR A . n A 1 121 GLU 121 325 325 GLU GLU A . n A 1 122 CYS 122 326 326 CYS CYS A . n A 1 123 ILE 123 327 327 ILE ILE A . n A 1 124 THR 124 328 328 THR THR A . n A 1 125 PHE 125 329 329 PHE PHE A . n A 1 126 LEU 126 330 330 LEU LEU A . n A 1 127 LYS 127 331 331 LYS LYS A . n A 1 128 ASP 128 332 332 ASP ASP A . n A 1 129 PHE 129 333 333 PHE PHE A . n A 1 130 THR 130 334 334 THR THR A . n A 1 131 TYR 131 335 335 TYR TYR A . n A 1 132 SER 132 336 336 SER SER A . n A 1 133 LYS 133 337 337 LYS LYS A . n A 1 134 ASP 134 338 338 ASP ASP A . n A 1 135 ASP 135 339 339 ASP ASP A . n A 1 136 PHE 136 340 340 PHE PHE A . n A 1 137 HIS 137 341 341 HIS HIS A . n A 1 138 ARG 138 342 342 ARG ARG A . n A 1 139 ALA 139 343 343 ALA ALA A . n A 1 140 GLY 140 344 344 GLY GLY A . n A 1 141 LEU 141 345 345 LEU LEU A . n A 1 142 GLN 142 346 346 GLN GLN A . n A 1 143 VAL 143 347 347 VAL VAL A . n A 1 144 GLU 144 348 348 GLU GLU A . n A 1 145 PHE 145 349 349 PHE PHE A . n A 1 146 ILE 146 350 350 ILE ILE A . n A 1 147 ASN 147 351 351 ASN ASN A . n A 1 148 PRO 148 352 352 PRO PRO A . n A 1 149 ILE 149 353 353 ILE ILE A . n A 1 150 PHE 150 354 354 PHE PHE A . n A 1 151 GLU 151 355 355 GLU GLU A . n A 1 152 PHE 152 356 356 PHE PHE A . n A 1 153 SER 153 357 357 SER SER A . n A 1 154 ARG 154 358 358 ARG ARG A . n A 1 155 ALA 155 359 359 ALA ALA A . n A 1 156 MET 156 360 360 MET MET A . n A 1 157 ARG 157 361 361 ARG ARG A . n A 1 158 ARG 158 362 362 ARG ARG A . n A 1 159 LEU 159 363 363 LEU LEU A . n A 1 160 GLY 160 364 364 GLY GLY A . n A 1 161 LEU 161 365 365 LEU LEU A . n A 1 162 ASP 162 366 366 ASP ASP A . n A 1 163 ASP 163 367 367 ASP ASP A . n A 1 164 ALA 164 368 368 ALA ALA A . n A 1 165 GLU 165 369 369 GLU GLU A . n A 1 166 TYR 166 370 370 TYR TYR A . n A 1 167 ALA 167 371 371 ALA ALA A . n A 1 168 LEU 168 372 372 LEU LEU A . n A 1 169 LEU 169 373 373 LEU LEU A . n A 1 170 ILE 170 374 374 ILE ILE A . n A 1 171 ALA 171 375 375 ALA ALA A . n A 1 172 ILE 172 376 376 ILE ILE A . n A 1 173 ASN 173 377 377 ASN ASN A . n A 1 174 ILE 174 378 378 ILE ILE A . n A 1 175 PHE 175 379 379 PHE PHE A . n A 1 176 SER 176 380 380 SER SER A . n A 1 177 ALA 177 381 381 ALA ALA A . n A 1 178 ASP 178 382 382 ASP ASP A . n A 1 179 ARG 179 383 383 ARG ARG A . n A 1 180 PRO 180 384 384 PRO PRO A . n A 1 181 ASN 181 385 385 ASN ASN A . n A 1 182 VAL 182 386 386 VAL VAL A . n A 1 183 GLN 183 387 387 GLN GLN A . n A 1 184 GLU 184 388 388 GLU GLU A . n A 1 185 PRO 185 389 389 PRO PRO A . n A 1 186 GLY 186 390 390 GLY GLY A . n A 1 187 ARG 187 391 391 ARG ARG A . n A 1 188 VAL 188 392 392 VAL VAL A . n A 1 189 GLU 189 393 393 GLU GLU A . n A 1 190 ALA 190 394 394 ALA ALA A . n A 1 191 LEU 191 395 395 LEU LEU A . n A 1 192 GLN 192 396 396 GLN GLN A . n A 1 193 GLN 193 397 397 GLN GLN A . n A 1 194 PRO 194 398 398 PRO PRO A . n A 1 195 TYR 195 399 399 TYR TYR A . n A 1 196 VAL 196 400 400 VAL VAL A . n A 1 197 GLU 197 401 401 GLU GLU A . n A 1 198 ALA 198 402 402 ALA ALA A . n A 1 199 LEU 199 403 403 LEU LEU A . n A 1 200 LEU 200 404 404 LEU LEU A . n A 1 201 SER 201 405 405 SER SER A . n A 1 202 TYR 202 406 406 TYR TYR A . n A 1 203 THR 203 407 407 THR THR A . n A 1 204 ARG 204 408 408 ARG ARG A . n A 1 205 ILE 205 409 409 ILE ILE A . n A 1 206 LYS 206 410 410 LYS LYS A . n A 1 207 ARG 207 411 411 ARG ARG A . n A 1 208 PRO 208 412 412 PRO PRO A . n A 1 209 GLN 209 413 413 GLN GLN A . n A 1 210 ASP 210 414 414 ASP ASP A . n A 1 211 GLN 211 415 415 GLN GLN A . n A 1 212 LEU 212 416 416 LEU LEU A . n A 1 213 ARG 213 417 417 ARG ARG A . n A 1 214 PHE 214 418 418 PHE PHE A . n A 1 215 PRO 215 419 419 PRO PRO A . n A 1 216 ARG 216 420 420 ARG ARG A . n A 1 217 MET 217 421 421 MET MET A . n A 1 218 LEU 218 422 422 LEU LEU A . n A 1 219 MET 219 423 423 MET MET A . n A 1 220 LYS 220 424 424 LYS LYS A . n A 1 221 LEU 221 425 425 LEU LEU A . n A 1 222 VAL 222 426 426 VAL VAL A . n A 1 223 SER 223 427 427 SER SER A . n A 1 224 LEU 224 428 428 LEU LEU A . n A 1 225 ARG 225 429 429 ARG ARG A . n A 1 226 THR 226 430 430 THR THR A . n A 1 227 LEU 227 431 431 LEU LEU A . n A 1 228 SER 228 432 432 SER SER A . n A 1 229 SER 229 433 433 SER SER A . n A 1 230 VAL 230 434 434 VAL VAL A . n A 1 231 HIS 231 435 435 HIS HIS A . n A 1 232 SER 232 436 436 SER SER A . n A 1 233 GLU 233 437 437 GLU GLU A . n A 1 234 GLN 234 438 438 GLN GLN A . n A 1 235 VAL 235 439 439 VAL VAL A . n A 1 236 PHE 236 440 440 PHE PHE A . n A 1 237 ALA 237 441 441 ALA ALA A . n A 1 238 LEU 238 442 442 LEU LEU A . n A 1 239 ARG 239 443 443 ARG ARG A . n A 1 240 LEU 240 444 444 LEU LEU A . n A 1 241 GLN 241 445 445 GLN GLN A . n A 1 242 ASP 242 446 446 ASP ASP A . n A 1 243 LYS 243 447 447 LYS LYS A . n A 1 244 LYS 244 448 448 LYS LYS A . n A 1 245 LEU 245 449 449 LEU LEU A . n A 1 246 PRO 246 450 450 PRO PRO A . n A 1 247 PRO 247 451 451 PRO PRO A . n A 1 248 LEU 248 452 452 LEU LEU A . n A 1 249 LEU 249 453 453 LEU LEU A . n A 1 250 SER 250 454 454 SER SER A . n A 1 251 GLU 251 455 455 GLU GLU A . n A 1 252 ILE 252 456 456 ILE ILE A . n A 1 253 TRP 253 457 457 TRP TRP A . n A 1 254 ASP 254 458 458 ASP ASP A . n A 1 255 VAL 255 459 459 VAL VAL A . n A 1 256 HIS 256 460 460 HIS HIS A . n A 1 257 GLU 257 461 461 GLU GLU A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 444 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1462 _pdbx_nonpoly_scheme.auth_seq_num 1462 _pdbx_nonpoly_scheme.pdb_mon_id 444 _pdbx_nonpoly_scheme.auth_mon_id 444 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-20 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Source and taxonomy' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 2 4 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 3 4 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 4 4 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 90.9938 _pdbx_refine_tls.origin_y -14.1682 _pdbx_refine_tls.origin_z 19.7661 _pdbx_refine_tls.T[1][1] 0.0638 _pdbx_refine_tls.T[2][2] 0.1087 _pdbx_refine_tls.T[3][3] 0.1664 _pdbx_refine_tls.T[1][2] 0.0172 _pdbx_refine_tls.T[1][3] 0.1026 _pdbx_refine_tls.T[2][3] 0.0144 _pdbx_refine_tls.L[1][1] 0.9628 _pdbx_refine_tls.L[2][2] 1.0883 _pdbx_refine_tls.L[3][3] 3.7705 _pdbx_refine_tls.L[1][2] 0.2183 _pdbx_refine_tls.L[1][3] -1.3316 _pdbx_refine_tls.L[2][3] -0.8609 _pdbx_refine_tls.S[1][1] 0.0930 _pdbx_refine_tls.S[1][2] 0.1023 _pdbx_refine_tls.S[1][3] 0.0167 _pdbx_refine_tls.S[2][1] -0.0122 _pdbx_refine_tls.S[2][2] 0.0861 _pdbx_refine_tls.S[2][3] 0.1953 _pdbx_refine_tls.S[3][1] -0.2553 _pdbx_refine_tls.S[3][2] -0.1829 _pdbx_refine_tls.S[3][3] -0.1791 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 219 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 461 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_entry_details.entry_id 1UPW _pdbx_entry_details.compound_details ;FUNCTION: ORPHAN RECEPTOR. BINDS PREFERENTIALLY TO DOUBLE-STRANDED OLIGONUCLEOTIDE DIRECT REPEATS HAVING THE CONSENSUS HALF-SITE SEQUENCE 5'-AGGTCA-3' AND 4-NT SPACING (DR-4). ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 257 ? ? CG A ASP 257 ? ? OD2 A ASP 257 ? ? 124.12 118.30 5.82 0.90 N 2 1 CB A ASP 338 ? ? CG A ASP 338 ? ? OD2 A ASP 338 ? ? 124.28 118.30 5.98 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 330 ? ? -111.81 -98.26 2 1 LYS A 331 ? ? -154.81 -45.02 3 1 ASP A 414 ? ? -105.51 76.72 4 1 HIS A 460 ? ? 43.08 139.99 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id N15 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id 444 _pdbx_validate_chiral.auth_seq_id 1462 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 225 ? CG ? A GLU 21 CG 2 1 Y 1 A GLU 225 ? CD ? A GLU 21 CD 3 1 Y 1 A GLU 225 ? OE1 ? A GLU 21 OE1 4 1 Y 1 A GLU 225 ? OE2 ? A GLU 21 OE2 5 1 Y 1 A GLN 237 ? CG ? A GLN 33 CG 6 1 Y 1 A GLN 237 ? CD ? A GLN 33 CD 7 1 Y 1 A GLN 237 ? OE1 ? A GLN 33 OE1 8 1 Y 1 A GLN 237 ? NE2 ? A GLN 33 NE2 9 1 Y 1 A VAL 249 ? CG1 ? A VAL 45 CG1 10 1 Y 1 A VAL 249 ? CG2 ? A VAL 45 CG2 11 1 Y 1 A GLU 461 ? CG ? A GLU 257 CG 12 1 Y 1 A GLU 461 ? CD ? A GLU 257 CD 13 1 Y 1 A GLU 461 ? OE1 ? A GLU 257 OE1 14 1 Y 1 A GLU 461 ? OE2 ? A GLU 257 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 205 ? A GLY 1 2 1 Y 1 A SER 206 ? A SER 2 3 1 Y 1 A HIS 207 ? A HIS 3 4 1 Y 1 A MET 208 ? A MET 4 5 1 Y 1 A SER 209 ? A SER 5 6 1 Y 1 A GLN 210 ? A GLN 6 7 1 Y 1 A GLY 211 ? A GLY 7 8 1 Y 1 A SER 212 ? A SER 8 9 1 Y 1 A GLY 213 ? A GLY 9 10 1 Y 1 A GLU 214 ? A GLU 10 11 1 Y 1 A GLY 215 ? A GLY 11 12 1 Y 1 A GLU 216 ? A GLU 12 13 1 Y 1 A GLY 217 ? A GLY 13 14 1 Y 1 A VAL 218 ? A VAL 14 15 1 Y 1 A CYS 238 ? A CYS 34 16 1 Y 1 A ASN 239 ? A ASN 35 17 1 Y 1 A LYS 240 ? A LYS 36 18 1 Y 1 A ARG 241 ? A ARG 37 19 1 Y 1 A SER 242 ? A SER 38 20 1 Y 1 A PHE 243 ? A PHE 39 21 1 Y 1 A SER 244 ? A SER 40 22 1 Y 1 A ASP 245 ? A ASP 41 23 1 Y 1 A GLN 246 ? A GLN 42 24 1 Y 1 A PRO 247 ? A PRO 43 25 1 Y 1 A LYS 248 ? A LYS 44 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1-HYDROXY-1-(TRIFLUOROMETHYL)ETHYL]PHENYL}BENZENESULFONAMIDE' _pdbx_entity_nonpoly.comp_id 444 #