HEADER ISOMERASE 24-NOV-03 1USJ OBSLTE 05-MAY-05 1USJ 2BI7 TITLE UDP-GALACTOPYRANOSE MUTASE FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RFBD; COMPND 5 EC: 5.4.99.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 4 EXPRESSION_SYSTEM_CELL_LINE: BL21 DE3; SOURCE 5 EXPRESSION_SYSTEM_VECTOR: E. COLI; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PWQ66 KEYWDS MUTASE, FLAVOPROTEIN, ISOMERASE, LIPOPOLYSACCHARIDE KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR K.BEIS,V.SRIKANNATHASAN,J.H.NAISMITH REVDAT 3 05-MAY-05 1USJ 1 OBSLTE REVDAT 2 27-APR-05 1USJ 1 JRNL REVDAT 1 15-DEC-04 1USJ 0 JRNL AUTH K.BEIS,V.SRIKANNATHASAN,H.LIU,S.FULLERTON, JRNL AUTH 2 V.BAMFORD D.SANDERS,C.WHITFIELD,M.MCNEIL, JRNL AUTH 3 J.H.NAISMITH JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIA TUBERCULOSIS JRNL TITL 2 AND KLEBSIELLA PNEUMONIAE UDP-GALACTOPYRANOSE JRNL TITL 3 MUTASE IN THE OXIDISED STATE AND KLEBSIELLA JRNL TITL 4 PNEUMONIAE UDP-GALACTOPYRANOSE MUTASE IN THE JRNL TITL 5 (ACTIVE) REDUCED STATE JRNL REF J.MOL.BIOL. V. 348 971 2005 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.A.SANDERS,A.G.STAINES,S.A.MCMAHON,M.R.MCNEIL, REMARK 1 AUTH 2 C.WHITFIELD,J.H.NAISMITH REMARK 1 TITL UDP-GALACTOPYRANOSE MUTASE HAS A NOVEL STRUCTURE REMARK 1 TITL 2 AND MECHANISM REMARK 1 REF NAT.STRUCT.BIOL. V. 8 858 2001 REMARK 1 REFN ASTM NSBIEW US ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 24353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 3215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3078 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2643 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4167 ; 1.678 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6156 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 9.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3356 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 645 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 595 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3012 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1774 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.350 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6534 25.2399 11.7282 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: 0.0631 REMARK 3 T33: 0.0467 T12: 0.0340 REMARK 3 T13: 0.0155 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.4769 L22: 0.5184 REMARK 3 L33: 0.6429 L12: -0.2448 REMARK 3 L13: 0.3350 L23: -0.3305 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.0889 S13: 0.0491 REMARK 3 S21: -0.0590 S22: -0.0169 S23: -0.0571 REMARK 3 S31: 0.0609 S32: 0.0893 S33: -0.0163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1USJ COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.101 (2007-05-31) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI. REMARK 100 THE EBI ID CODE IS EBI-13585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-2003 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU 007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 74.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 16.600 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1I8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH6.5, 50MM CACL2, REMARK 280 30% PEG550 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,2/3+Z REMARK 290 3555 -X+Y,-X,1/3+Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,1/3-Z REMARK 290 6555 -X,-X+Y,2/3-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.52867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.26433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.26433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.52867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 128 REMARK 465 ILE A 129 REMARK 465 ALA A 130 REMARK 465 THR A 371 REMARK 465 GLU A 372 REMARK 465 ARG A 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CD ARG A 224 O HOH Z 57 0.35 REMARK 500 NH1 ARG A 224 O HOH Z 56 0.65 REMARK 500 O LEU A 140 N PHE A 142 1.09 REMARK 500 NE ARG A 224 O HOH Z 57 1.19 REMARK 500 CG ARG A 224 O HOH Z 57 1.56 REMARK 500 CZ ARG A 224 O HOH Z 56 1.68 REMARK 500 O ALA A 139 N ARG A 141 1.87 REMARK 500 O ASP A 33 O LEU A 215 1.93 REMARK 500 O ASP A 47 O THR A 50 1.97 REMARK 500 OE1 GLN A 262 O HOH Z 67 1.98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 53 SD MET A 53 CE -0.564 REMARK 500 GLU A 136 C GLU A 137 N -0.305 REMARK 500 PHE A 142 C ILE A 143 N -0.186 REMARK 500 MET A 193 SD MET A 193 CE -0.326 REMARK 500 ASN A 207 C HIS A 208 N -0.182 REMARK 500 VAL A 221 C GLU A 222 N -0.453 REMARK 500 GLU A 223 C ARG A 224 N 0.251 REMARK 500 THR A 225 CB THR A 225 OG1 -0.285 REMARK 500 THR A 225 C HIS A 226 N -0.345 REMARK 500 PRO A 375 C MET A 376 N -0.341 REMARK 500 MET A 376 C PRO A 377 N -0.793 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 136 O - C - N ANGL. DEV. =-60.8 DEGREES REMARK 500 ALA A 139 O - C - N ANGL. DEV. =-25.0 DEGREES REMARK 500 ARG A 141 C - N - CA ANGL. DEV. =-42.5 DEGREES REMARK 500 PHE A 142 CA - C - N ANGL. DEV. = 18.7 DEGREES REMARK 500 PHE A 142 O - C - N ANGL. DEV. =-18.7 DEGREES REMARK 500 ILE A 143 C - N - CA ANGL. DEV. = 30.9 DEGREES REMARK 500 VAL A 221 CA - C - N ANGL. DEV. = 32.8 DEGREES REMARK 500 VAL A 221 O - C - N ANGL. DEV. =-32.3 DEGREES REMARK 500 GLU A 223 O - C - N ANGL. DEV. =-30.2 DEGREES REMARK 500 THR A 225 CA - CB - CG2 ANGL. DEV. = 31.9 DEGREES REMARK 500 ALA A 305 CA - C - N ANGL. DEV. = 33.4 DEGREES REMARK 500 ALA A 305 O - C - N ANGL. DEV. =-33.0 DEGREES REMARK 500 PRO A 375 CA - C - N ANGL. DEV. = 50.9 DEGREES REMARK 500 PRO A 375 O - C - N ANGL. DEV. =-63.5 DEGREES REMARK 500 MET A 376 C - N - CA ANGL. DEV. = 20.9 DEGREES REMARK 500 MET A 376 O - C - N ANGL. DEV. =-21.7 DEGREES REMARK 500 PRO A 377 C - N - CA ANGL. DEV. = 33.2 DEGREES REMARK 500 PRO A 377 C - N - CD ANGL. DEV. =-34.6 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 139 -124.24 101.87 REMARK 500 ARG A 141 51.90 -28.43 REMARK 500 PHE A 142 -23.88 119.34 REMARK 500 ARG A 224 -113.00 -6.41 REMARK 500 GLU A 307 -115.99 160.46 REMARK 500 MET A 376 96.14 112.14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 95 SER A 96 128.56 REMARK 500 VAL A 221 GLU A 222 -141.04 REMARK 500 PRO A 375 MET A 376 60.68 REMARK 500 MET A 376 PRO A 377 -147.23 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 SITE_DESCRIPTION: FAD BINDING SITE FOR CHAIN A DBREF 1USJ A 1 384 UNP Q48485 GLF1_KLEPN 1 384 SEQADV 1USJ GLN A 262 UNP Q48485 ASP 262 CONFLICT SEQRES 1 A 384 MET LYS SER LYS LYS ILE LEU ILE VAL GLY ALA GLY PHE SEQRES 2 A 384 SER GLY ALA VAL ILE GLY ARG GLN LEU ALA GLU LYS GLY SEQRES 3 A 384 HIS GLN VAL HIS ILE ILE ASP GLN ARG ASP HIS ILE GLY SEQRES 4 A 384 GLY ASN SER TYR ASP ALA ARG ASP SER GLU THR ASN VAL SEQRES 5 A 384 MET VAL HIS VAL TYR GLY PRO HIS ILE PHE HIS THR ASP SEQRES 6 A 384 ASN GLU THR VAL TRP ASN TYR VAL ASN LYS HIS ALA GLU SEQRES 7 A 384 MET MET PRO TYR VAL ASN ARG VAL LYS ALA THR VAL ASN SEQRES 8 A 384 GLY GLN VAL PHE SER LEU PRO ILE ASN LEU HIS THR ILE SEQRES 9 A 384 ASN GLN PHE PHE SER LYS THR CYS SER PRO ASP GLU ALA SEQRES 10 A 384 ARG ALA LEU ILE ALA GLU LYS GLY ASP SER THR ILE ALA SEQRES 11 A 384 ASP PRO GLN THR PHE GLU GLU GLN ALA LEU ARG PHE ILE SEQRES 12 A 384 GLY LYS GLU LEU TYR GLU ALA PHE PHE LYS GLY TYR THR SEQRES 13 A 384 ILE LYS GLN TRP GLY MET GLN PRO SER GLU LEU PRO ALA SEQRES 14 A 384 SER ILE LEU LYS ARG LEU PRO VAL ARG PHE ASN TYR ASP SEQRES 15 A 384 ASP ASN TYR PHE ASN HIS LYS PHE GLN GLY MET PRO LYS SEQRES 16 A 384 CYS GLY TYR THR GLN MET ILE LYS SER ILE LEU ASN HIS SEQRES 17 A 384 GLU ASN ILE LYS VAL ASP LEU GLN ARG GLU PHE ILE VAL SEQRES 18 A 384 GLU GLU ARG THR HIS TYR ASP HIS VAL PHE TYR SER GLY SEQRES 19 A 384 PRO LEU ASP ALA PHE TYR GLY TYR GLN TYR GLY ARG LEU SEQRES 20 A 384 GLY TYR ARG THR LEU ASP PHE LYS LYS PHE THR TYR GLN SEQRES 21 A 384 GLY GLN TYR GLN GLY CYS ALA VAL MET ASN TYR CYS SER SEQRES 22 A 384 VAL ASP VAL PRO TYR THR ARG ILE THR GLU HIS LYS TYR SEQRES 23 A 384 PHE SER PRO TRP GLU GLN HIS ASP GLY SER VAL CYS TYR SEQRES 24 A 384 LYS GLU TYR SER ARG ALA CYS GLU GLU ASN ASP ILE PRO SEQRES 25 A 384 TYR TYR PRO ILE ARG GLN MET GLY GLU MET ALA LEU LEU SEQRES 26 A 384 GLU LYS TYR LEU SER LEU ALA GLU ASN GLU THR ASN ILE SEQRES 27 A 384 THR PHE VAL GLY ARG LEU GLY THR TYR ARG TYR LEU ASP SEQRES 28 A 384 MET ASP VAL THR ILE ALA GLU ALA LEU LYS THR ALA GLU SEQRES 29 A 384 VAL TYR LEU ASN SER LEU THR GLU ASN GLN PRO MET PRO SEQRES 30 A 384 VAL PHE THR VAL SER VAL ARG HET FAD A1384 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *91(H2 O) HELIX 1 1 GLY A 12 GLU A 24 1 13 HELIX 2 2 GLY A 39 SER A 42 5 4 HELIX 3 3 ASN A 66 LYS A 75 1 10 HELIX 4 4 ASN A 100 PHE A 108 1 9 HELIX 5 5 SER A 113 GLY A 125 1 13 HELIX 6 6 ILE A 143 PHE A 152 1 10 HELIX 7 7 PHE A 152 GLY A 161 1 10 HELIX 8 8 GLN A 163 LEU A 167 5 5 HELIX 9 9 CYS A 196 ASN A 207 1 12 HELIX 10 10 GLU A 223 TYR A 227 5 5 HELIX 11 11 PRO A 235 TYR A 240 1 6 HELIX 12 12 LYS A 285 SER A 288 5 4 HELIX 13 13 GLN A 318 GLU A 333 1 16 HELIX 14 14 VAL A 341 TYR A 347 1 7 HELIX 15 15 ASP A 351 LEU A 370 1 20 SHEET 1 AA 5 ILE A 211 ASP A 214 0 SHEET 2 AA 5 GLN A 28 ILE A 32 1 O VAL A 29 N LYS A 212 SHEET 3 AA 5 LYS A 5 VAL A 9 1 O ILE A 6 N HIS A 30 SHEET 4 AA 5 HIS A 229 TYR A 232 1 O HIS A 229 N LEU A 7 SHEET 5 AA 5 ILE A 338 PHE A 340 1 O THR A 339 N TYR A 232 SHEET 1 AB 2 ASP A 44 ARG A 46 0 SHEET 2 AB 2 MET A 53 HIS A 55 -1 O VAL A 54 N ALA A 45 SHEET 1 AC 3 PHE A 62 THR A 64 0 SHEET 2 AC 3 PHE A 190 LYS A 195 -1 O PHE A 190 N THR A 64 SHEET 3 AC 3 GLU A 78 PRO A 81 -1 O GLU A 78 N LYS A 195 SHEET 1 AD 7 GLN A 93 LEU A 97 0 SHEET 2 AD 7 VAL A 86 VAL A 90 -1 O VAL A 86 N LEU A 97 SHEET 3 AD 7 VAL A 268 TYR A 271 1 O VAL A 268 N LYS A 87 SHEET 4 AD 7 ARG A 280 GLU A 283 -1 O ILE A 281 N MET A 269 SHEET 5 AD 7 GLY A 295 ALA A 305 -1 O TYR A 299 N THR A 282 SHEET 6 AD 7 TYR A 249 GLN A 260 -1 O THR A 251 N ARG A 304 SHEET 7 AD 7 TYR A 314 PRO A 315 -1 O TYR A 314 N ARG A 250 CISPEP 1 LEU A 97 PRO A 98 0 1.26 CRYST1 85.676 85.676 99.793 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011672 0.006739 0.000000 0.00000 SCALE2 0.000000 0.013478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010021 0.00000