HEADER HYDROLASE 04-DEC-03 1UT9 TITLE STRUCTURAL BASIS FOR THE EXOCELLULASE ACTIVITY OF THE TITLE 2 CELLOBIOHYDROLASE CBHA FROM C. THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE 1,4-BETA-CELLOBIOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 208-816; COMPND 5 SYNONYM: CELLOBIOHYDROLASE CBHA, EXOGLUCANASE, EXOCELLOBIOHYDROLASE, COMPND 6 1,4-BETA-CELLOBIOHYDROLASE; COMPND 7 EC: 3.2.1.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-21B(+) KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE, FAMILY 9, CELLOBIOHYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.D.SCHUBOT,I.A.KATAEVA,J.CHANG,A.K.SHAH,L.G.LJUNGDAHL,J.P.ROSE, AUTHOR 2 B.C.WANG REVDAT 4 08-MAY-24 1UT9 1 REMARK REVDAT 3 13-JUN-18 1UT9 1 SOURCE JRNL REMARK REVDAT 2 24-FEB-09 1UT9 1 VERSN REVDAT 1 12-FEB-04 1UT9 0 JRNL AUTH F.D.SCHUBOT,I.A.KATAEVA,J.CHANG,A.K.SHAH,L.G.LJUNGDAHL, JRNL AUTH 2 J.P.ROSE,B.C.WANG JRNL TITL STRUCTURAL BASIS FOR THE EXOCELLULASE ACTIVITY OF THE JRNL TITL 2 CELLOBIOHYDROLASE CBHA FROM CLOSTRIDIUM THERMOCELLUM. JRNL REF BIOCHEMISTRY V. 43 1163 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 14756552 JRNL DOI 10.1021/BI030202I REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 41182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.621 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. PLEASE NOTE THAT THIS ENTRY CONTAINS ATOMS REFINED REMARK 3 WITH 0.00 OCCUPANCY. REMARK 4 REMARK 4 1UT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1290014101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RIGAKU HI RES OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM REMARK 200 DATA SCALING SOFTWARE : PROTEUM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41182 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 69.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 0.2M (NH4)2SO4, 0.1M REMARK 280 TRIS, PH 7.0, PH 8.50, BATCH MODE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.27300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.74900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.74900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.27300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 599 REMARK 465 ASN A 600 REMARK 465 GLY A 601 REMARK 465 GLY A 602 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 814 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 815 OG1 CG2 REMARK 470 ASP A 816 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 224 OE2 REMARK 480 ASN A 234 ND2 REMARK 480 GLN A 237 CG REMARK 480 LYS A 305 CE NZ REMARK 480 MET A 330 CE REMARK 480 GLU A 336 CD OE1 OE2 REMARK 480 LYS A 351 NZ REMARK 480 ASP A 362 OD1 REMARK 480 ARG A 420 NH2 REMARK 480 MET A 424 CE REMARK 480 GLU A 428 OE1 REMARK 480 LYS A 455 CE NZ REMARK 480 LYS A 512 CE NZ REMARK 480 GLU A 524 OE1 REMARK 480 LYS A 535 CE NZ REMARK 480 GLY A 598 C O REMARK 480 ALA A 603 N CA CB REMARK 480 ARG A 652 CD NH2 REMARK 480 GLU A 672 CG CD OE1 OE2 REMARK 480 PHE A 765 CE2 REMARK 480 LYS A 775 CE NZ REMARK 480 LYS A 776 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2610 O HOH A 2620 0.68 REMARK 500 CA ALA A 603 O HOH A 2657 0.91 REMARK 500 O HOH A 2439 O HOH A 2446 0.98 REMARK 500 OE2 GLU A 672 O HOH A 2734 1.01 REMARK 500 CE LYS A 776 O HOH A 2824 1.10 REMARK 500 CB ALA A 603 O HOH A 2656 1.13 REMARK 500 CG2 THR A 793 O HOH A 2835 1.21 REMARK 500 CA ASP A 362 O HOH A 2303 1.22 REMARK 500 CD ARG A 739 O HOH A 2786 1.26 REMARK 500 NZ LYS A 448 O HOH A 2462 1.26 REMARK 500 O HOH A 2717 O HOH A 2718 1.27 REMARK 500 CA GLY A 260 O HOH A 2067 1.30 REMARK 500 NH2 ARG A 652 O HOH A 2711 1.32 REMARK 500 O HOH A 2022 O HOH A 2117 1.34 REMARK 500 N GLY A 260 O HOH A 2070 1.34 REMARK 500 CB THR A 339 O HOH A 2240 1.37 REMARK 500 O HOH A 2369 O HOH A 2370 1.37 REMARK 500 CB GLU A 579 O HOH A 2637 1.43 REMARK 500 CG LEU A 243 O HOH A 2051 1.43 REMARK 500 CG2 THR A 339 O HOH A 2240 1.43 REMARK 500 CA THR A 793 O HOH A 2840 1.44 REMARK 500 CB ASP A 362 O HOH A 2304 1.45 REMARK 500 CB TYR A 268 O HOH A 2083 1.46 REMARK 500 N ALA A 603 O HOH A 2656 1.46 REMARK 500 C GLU A 348 CD PRO A 349 1.47 REMARK 500 CZ ARG A 652 O HOH A 2711 1.47 REMARK 500 CB LEU A 243 O HOH A 2051 1.47 REMARK 500 O GLU A 348 CD PRO A 349 1.48 REMARK 500 OD1 ASP A 435 O HOH A 2439 1.50 REMARK 500 CB PRO A 349 O HOH A 2271 1.50 REMARK 500 CD LYS A 648 O HOH A 2706 1.52 REMARK 500 CB THR A 793 O HOH A 2835 1.53 REMARK 500 CG1 ILE A 785 O HOH A 2523 1.55 REMARK 500 CD GLU A 672 O HOH A 2734 1.58 REMARK 500 N ARG A 673 O HOH A 2735 1.59 REMARK 500 CB THR A 637 O HOH A 2690 1.62 REMARK 500 CE LYS A 351 O HOH A 2277 1.64 REMARK 500 N ASP A 362 O HOH A 2303 1.65 REMARK 500 CB THR A 793 O HOH A 2840 1.65 REMARK 500 O HOH A 2211 O HOH A 2212 1.65 REMARK 500 CB LYS A 448 O HOH A 2464 1.65 REMARK 500 CG MET A 330 O HOH A 2229 1.66 REMARK 500 O HOH A 2337 O HOH A 2338 1.67 REMARK 500 O HOH A 2788 O HOH A 2848 1.67 REMARK 500 O HOH A 2663 O HOH A 2665 1.67 REMARK 500 CB GLU A 257 O HOH A 2062 1.67 REMARK 500 CA PRO A 349 O HOH A 2271 1.69 REMARK 500 CE LYS A 448 O HOH A 2464 1.70 REMARK 500 CA ALA A 603 O HOH A 2656 1.71 REMARK 500 OE2 GLU A 428 O HOH A 2422 1.71 REMARK 500 REMARK 500 THIS ENTRY HAS 167 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2105 O HOH A 2120 4566 1.86 REMARK 500 O HOH A 2008 O HOH A 2120 4566 1.94 REMARK 500 O HOH A 2576 O HOH A 2680 3645 1.98 REMARK 500 O HOH A 2111 O HOH A 2710 4566 2.05 REMARK 500 O HOH A 2003 O HOH A 2449 4566 2.11 REMARK 500 O HOH A 2003 O HOH A 2448 4566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 224 CD GLU A 224 OE2 0.151 REMARK 500 GLN A 237 CG GLN A 237 CD 0.255 REMARK 500 MET A 330 SD MET A 330 CE -0.577 REMARK 500 GLU A 336 CG GLU A 336 CD -0.140 REMARK 500 GLU A 336 CD GLU A 336 OE2 0.296 REMARK 500 ASP A 362 CG ASP A 362 OD1 0.221 REMARK 500 MET A 424 SD MET A 424 CE -0.356 REMARK 500 GLU A 428 CD GLU A 428 OE1 -0.140 REMARK 500 GLU A 524 CD GLU A 524 OE1 -0.100 REMARK 500 GLY A 598 CA GLY A 598 C 0.437 REMARK 500 ALA A 603 N ALA A 603 CA 0.643 REMARK 500 ALA A 603 CA ALA A 603 CB 1.072 REMARK 500 ARG A 652 CD ARG A 652 NE -0.208 REMARK 500 ARG A 652 CZ ARG A 652 NH2 -0.094 REMARK 500 GLU A 672 CB GLU A 672 CG 0.416 REMARK 500 PHE A 765 CZ PHE A 765 CE2 0.663 REMARK 500 PHE A 765 CE2 PHE A 765 CD2 -0.532 REMARK 500 LYS A 775 CD LYS A 775 CE 0.512 REMARK 500 LYS A 776 CD LYS A 776 CE 0.773 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 224 OE1 - CD - OE2 ANGL. DEV. = -36.7 DEGREES REMARK 500 GLN A 237 CG - CD - OE1 ANGL. DEV. = -27.6 DEGREES REMARK 500 GLN A 237 CG - CD - NE2 ANGL. DEV. = 21.2 DEGREES REMARK 500 MET A 330 CG - SD - CE ANGL. DEV. = 12.0 DEGREES REMARK 500 GLU A 336 CB - CG - CD ANGL. DEV. = 21.5 DEGREES REMARK 500 PRO A 349 C - N - CA ANGL. DEV. = 38.5 DEGREES REMARK 500 PRO A 349 C - N - CD ANGL. DEV. = -65.8 DEGREES REMARK 500 PRO A 349 CA - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 PRO A 349 N - CD - CG ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 362 OD1 - CG - OD2 ANGL. DEV. = -19.6 DEGREES REMARK 500 ASP A 362 CB - CG - OD1 ANGL. DEV. = -21.1 DEGREES REMARK 500 ASP A 414 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 420 NH1 - CZ - NH2 ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 420 NE - CZ - NH2 ANGL. DEV. = 17.2 DEGREES REMARK 500 MET A 424 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 GLU A 428 CG - CD - OE1 ANGL. DEV. = -12.6 DEGREES REMARK 500 LYS A 455 CG - CD - CE ANGL. DEV. = 23.8 DEGREES REMARK 500 LYS A 455 CD - CE - NZ ANGL. DEV. = 13.8 DEGREES REMARK 500 GLU A 524 OE1 - CD - OE2 ANGL. DEV. = -10.0 DEGREES REMARK 500 GLY A 598 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 GLY A 598 CA - C - O ANGL. DEV. = -13.4 DEGREES REMARK 500 ALA A 603 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 ALA A 603 CB - CA - C ANGL. DEV. = -27.0 DEGREES REMARK 500 ALA A 603 N - CA - CB ANGL. DEV. = -48.9 DEGREES REMARK 500 ARG A 652 CG - CD - NE ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 652 CD - NE - CZ ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 652 NH1 - CZ - NH2 ANGL. DEV. = -35.5 DEGREES REMARK 500 ARG A 652 NE - CZ - NH2 ANGL. DEV. = 29.7 DEGREES REMARK 500 GLU A 672 OE1 - CD - OE2 ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU A 672 CG - CD - OE1 ANGL. DEV. = 12.2 DEGREES REMARK 500 GLU A 672 CG - CD - OE2 ANGL. DEV. = -34.8 DEGREES REMARK 500 PHE A 765 CG - CD2 - CE2 ANGL. DEV. = 25.1 DEGREES REMARK 500 PHE A 765 CZ - CE2 - CD2 ANGL. DEV. = -14.7 DEGREES REMARK 500 LYS A 775 CG - CD - CE ANGL. DEV. = -28.2 DEGREES REMARK 500 LYS A 776 CG - CD - CE ANGL. DEV. = -35.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 349 -63.50 118.48 REMARK 500 TYR A 365 42.95 -104.52 REMARK 500 ALA A 384 -133.88 -156.85 REMARK 500 ASN A 393 -51.24 78.41 REMARK 500 ASP A 457 96.68 -165.89 REMARK 500 HIS A 469 -178.33 -173.03 REMARK 500 TYR A 555 51.97 38.18 REMARK 500 ALA A 603 -123.70 -19.22 REMARK 500 GLU A 670 54.76 -96.98 REMARK 500 ARG A 673 -37.65 95.68 REMARK 500 ASN A 794 33.54 -145.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 224 0.22 SIDE CHAIN REMARK 500 GLN A 237 0.08 SIDE CHAIN REMARK 500 ASP A 362 0.22 SIDE CHAIN REMARK 500 GLU A 428 0.08 SIDE CHAIN REMARK 500 GLU A 524 0.08 SIDE CHAIN REMARK 500 GLU A 672 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2105 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2161 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2220 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A2221 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A2266 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2275 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A2288 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A2289 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A2332 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2387 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2406 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A2522 DISTANCE = 6.10 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 2021 REMARK 615 HOH A 2030 REMARK 615 HOH A 2031 REMARK 615 HOH A 2032 REMARK 615 HOH A 2048 REMARK 615 HOH A 2141 REMARK 615 HOH A 2248 REMARK 615 HOH A 2261 REMARK 615 HOH A 2300 REMARK 615 HOH A 2386 REMARK 615 HOH A 2433 REMARK 615 HOH A 2442 REMARK 615 HOH A 2444 REMARK 615 HOH A 2447 REMARK 615 HOH A 2494 REMARK 615 HOH A 2501 REMARK 615 HOH A 2526 REMARK 615 HOH A 2612 REMARK 615 HOH A 2618 REMARK 615 HOH A 2619 REMARK 615 HOH A 2675 REMARK 615 HOH A 2704 REMARK 615 HOH A 2838 REMARK 615 HOH A 2839 REMARK 615 HOH A 2841 REMARK 615 HOH A 2842 REMARK 615 HOH A 2843 DBREF 1UT9 A 208 816 PDB 1UT9 1UT9 208 816 SEQRES 1 A 609 ILE LEU PRO GLN PRO ASP VAL ARG VAL ASN GLN VAL GLY SEQRES 2 A 609 TYR LEU PRO GLU GLY LYS LYS VAL ALA THR VAL VAL CYS SEQRES 3 A 609 ASN SER THR GLN PRO VAL LYS TRP GLN LEU LYS ASN ALA SEQRES 4 A 609 ALA GLY VAL VAL VAL LEU GLU GLY TYR THR GLU PRO LYS SEQRES 5 A 609 GLY LEU ASP LYS ASP SER GLN ASP TYR VAL HIS TRP LEU SEQRES 6 A 609 ASP PHE SER ASP PHE ALA THR GLU GLY ILE GLY TYR TYR SEQRES 7 A 609 PHE GLU LEU PRO THR VAL ASN SER PRO THR ASN TYR SER SEQRES 8 A 609 HIS PRO PHE ASP ILE ARG LYS ASP ILE TYR THR GLN MET SEQRES 9 A 609 LYS TYR ASP ALA LEU ALA PHE PHE TYR HIS LYS ARG SER SEQRES 10 A 609 GLY ILE PRO ILE GLU MET PRO TYR ALA GLY GLY GLU GLN SEQRES 11 A 609 TRP THR ARG PRO ALA GLY HIS ILE GLY ILE GLU PRO ASN SEQRES 12 A 609 LYS GLY ASP THR ASN VAL PRO THR TRP PRO GLN ASP ASP SEQRES 13 A 609 GLU TYR ALA GLY ILE PRO GLN LYS ASN TYR THR LYS ASP SEQRES 14 A 609 VAL THR GLY GLY TRP TYR ASP ALA GLY ASP HIS GLY LYS SEQRES 15 A 609 TYR VAL VAL ASN GLY GLY ILE ALA VAL TRP THR LEU MET SEQRES 16 A 609 ASN MET TYR GLU ARG ALA LYS ILE ARG GLY LEU ASP ASN SEQRES 17 A 609 TRP GLY PRO TYR ARG ASP GLY GLY MET ASN ILE PRO GLU SEQRES 18 A 609 GLN ASN ASN GLY TYR PRO ASP ILE LEU ASP GLU ALA ARG SEQRES 19 A 609 TRP GLU ILE GLU PHE PHE LYS LYS MET GLN VAL THR GLU SEQRES 20 A 609 LYS GLU ASP PRO SER ILE ALA GLY MET VAL HIS HIS LYS SEQRES 21 A 609 ILE HIS ASP PHE ARG TRP THR ALA LEU GLY MET LEU PRO SEQRES 22 A 609 HIS GLU ASP PRO GLN PRO ARG TYR LEU ARG PRO VAL SER SEQRES 23 A 609 THR ALA ALA THR LEU ASN PHE ALA ALA THR LEU ALA GLN SEQRES 24 A 609 SER ALA ARG LEU TRP LYS ASP TYR ASP PRO THR PHE ALA SEQRES 25 A 609 ALA ASP CYS LEU GLU LYS ALA GLU ILE ALA TRP GLN ALA SEQRES 26 A 609 ALA LEU LYS HIS PRO ASP ILE TYR ALA GLU TYR THR PRO SEQRES 27 A 609 GLY SER GLY GLY PRO GLY GLY GLY PRO TYR ASN ASP ASP SEQRES 28 A 609 TYR VAL GLY ASP GLU PHE TYR TRP ALA ALA CYS GLU LEU SEQRES 29 A 609 TYR VAL THR THR GLY LYS ASP GLU TYR LYS ASN TYR LEU SEQRES 30 A 609 MET ASN SER PRO HIS TYR LEU GLU MET PRO ALA LYS MET SEQRES 31 A 609 GLY GLU ASN GLY GLY ALA ASN GLY GLU ASP ASN GLY LEU SEQRES 32 A 609 TRP GLY CYS PHE THR TRP GLY THR THR GLN GLY LEU GLY SEQRES 33 A 609 THR ILE THR LEU ALA LEU VAL GLU ASN GLY LEU PRO ALA SEQRES 34 A 609 THR ASP ILE GLN LYS ALA ARG ASN ASN ILE ALA LYS ALA SEQRES 35 A 609 ALA ASP ARG TRP LEU GLU ASN ILE GLU GLU GLN GLY TYR SEQRES 36 A 609 ARG LEU PRO ILE LYS GLN ALA GLU ASP GLU ARG GLY GLY SEQRES 37 A 609 TYR PRO TRP GLY SER ASN SER PHE ILE LEU ASN GLN MET SEQRES 38 A 609 ILE VAL MET GLY TYR ALA TYR ASP PHE THR GLY ASP SER SEQRES 39 A 609 LYS TYR LEU ASP GLY MET PHE ASP GLY ILE SER TYR LEU SEQRES 40 A 609 LEU GLY ARG ASN ALA MET ASP GLN SER TYR VAL THR GLY SEQRES 41 A 609 TYR GLY GLU ARG PRO LEU GLN ASN PRO HIS ASP ARG PHE SEQRES 42 A 609 TRP THR PRO GLN THR SER LYS ARG PHE PRO ALA PRO PRO SEQRES 43 A 609 PRO GLY ILE ILE SER GLY GLY PRO ASN SER ARG PHE GLU SEQRES 44 A 609 ASP PRO THR ILE ASN ALA ALA VAL LYS LYS ASP THR PRO SEQRES 45 A 609 PRO GLN LYS CYS PHE ILE ASP HIS THR ASP SER TRP SER SEQRES 46 A 609 THR ASN GLU ILE THR VAL ASN TRP ASN ALA PRO PHE ALA SEQRES 47 A 609 TRP VAL THR ALA TYR LEU ASP GLN TYR THR ASP FORMUL 2 HOH *860(H2 O) HELIX 1 1 GLN A 310 LYS A 322 1 13 HELIX 2 2 GLY A 335 THR A 339 5 5 HELIX 3 3 VAL A 391 ARG A 411 1 21 HELIX 4 4 TRP A 416 ARG A 420 5 5 HELIX 5 5 PRO A 434 GLN A 451 1 18 HELIX 6 6 ASP A 457 ALA A 461 5 5 HELIX 7 7 LEU A 479 ASP A 483 5 5 HELIX 8 8 THR A 494 LYS A 512 1 19 HELIX 9 9 ASP A 515 HIS A 536 1 22 HELIX 10 10 VAL A 560 GLY A 576 1 17 HELIX 11 11 LYS A 577 ASN A 586 1 10 HELIX 12 12 ASN A 604 ASN A 608 5 5 HELIX 13 13 THR A 619 VAL A 630 1 12 HELIX 14 14 PRO A 635 GLU A 659 1 25 HELIX 15 15 GLY A 679 GLY A 699 1 21 HELIX 16 16 SER A 701 LEU A 715 1 15 HELIX 17 17 ASP A 767 VAL A 774 1 8 HELIX 18 18 PRO A 779 CYS A 783 5 5 HELIX 19 19 SER A 790 GLU A 795 1 6 HELIX 20 20 THR A 797 ASP A 816 1 20 SHEET 1 AA 4 VAL A 214 ARG A 215 0 SHEET 2 AA 4 VAL A 228 VAL A 232 -1 O THR A 230 N ARG A 215 SHEET 3 AA 4 TYR A 268 ASP A 273 -1 O HIS A 270 N VAL A 231 SHEET 4 AA 4 GLU A 257 LEU A 261 -1 O GLU A 257 N TRP A 271 SHEET 1 AB 5 GLY A 220 TYR A 221 0 SHEET 2 AB 5 PHE A 301 ILE A 303 1 O ASP A 302 N TYR A 221 SHEET 3 AB 5 GLY A 281 GLU A 287 -1 O GLY A 281 N ILE A 303 SHEET 4 AB 5 LYS A 240 LYS A 244 -1 O GLN A 242 N GLU A 287 SHEET 5 AB 5 VAL A 250 TYR A 255 -1 N VAL A 251 O LEU A 243 SHEET 1 AC 2 VAL A 356 PRO A 357 0 SHEET 2 AC 2 THR A 374 LYS A 375 -1 O LYS A 375 N VAL A 356 SHEET 1 AD 3 LYS A 389 TYR A 390 0 SHEET 2 AD 3 LYS A 467 ASP A 470 -1 O ILE A 468 N LYS A 389 SHEET 3 AD 3 ARG A 487 LEU A 489 -1 O TYR A 488 N HIS A 469 SHEET 1 AE 2 VAL A 464 HIS A 465 0 SHEET 2 AE 2 VAL A 492 SER A 493 -1 N SER A 493 O VAL A 464 CISPEP 1 MET A 330 PRO A 331 0 -0.43 CISPEP 2 GLY A 352 ASP A 353 0 7.71 CRYST1 74.546 75.760 137.498 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007273 0.00000