HEADER TRANSCRIPTION REGULATION 05-DEC-03 1UTB TITLE DNTR FROM BURKHOLDERIA SP. STRAIN DNT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSR-TYPE REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYSR-TYPE REGULATORY PROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA SP.; SOURCE 3 ORGANISM_TAXID: 233098; SOURCE 4 STRAIN: DNT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BURKHOLDERIA SP.; SOURCE 9 ORGANISM_TAXID: 233098; SOURCE 10 STRAIN: DNT; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REGULATION, LYSR, TRANSCRIPTIONAL REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SMIRNOVA,C.DIAN,G.A.LEONARD,S.MCSWEENEY,D.BIRSE, AUTHOR 2 P.BRZEZINSKI REVDAT 2 24-FEB-09 1UTB 1 VERSN REVDAT 1 01-JUL-04 1UTB 0 JRNL AUTH I.A.SMIRNOVA,C.DIAN,G.A.LEONARD,S.MCSWEENEY, JRNL AUTH 2 D.BIRSE,P.BRZEZINSKI JRNL TITL DEVELOPMENT OF A BACTERIAL BIOSENSOR FOR JRNL TITL 2 NITROTOLUENES: THE CRYSTAL STRUCTURE OF THE JRNL TITL 3 TRANSCRIPTIONAL REGULATOR DNTR JRNL REF J.MOL.BIOL. V. 340 405 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15210343 JRNL DOI 10.1016/J.JMB.2004.04.071 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 29866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1954 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -1.68000 REMARK 3 B12 (A**2) : 0.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.276 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3570 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3296 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4835 ; 1.428 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7615 ; 0.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3949 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 758 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 749 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3871 ; 0.235 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2203 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2215 ; 0.658 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3561 ; 1.263 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 1.521 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1274 ; 2.660 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1UTB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-03. REMARK 100 THE PDBE ID CODE IS EBI-14117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29866 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.3 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.5 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 197.76933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.88467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.32700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.44233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 247.21167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 197.76933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 98.88467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.44233 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 148.32700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 247.21167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 107.14800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 148.32700 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUES THR 192 SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ASN A -7 REMARK 465 ASN A -6 REMARK 465 GLY A -5 REMARK 465 GLU A -4 REMARK 465 GLY A -3 REMARK 465 GLU A -2 REMARK 465 VAL A -1 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 ILE A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 ASN A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 PHE A 14 REMARK 465 ASN A 15 REMARK 465 GLN A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 ASP A 20 REMARK 465 ARG A 21 REMARK 465 SER A 22 REMARK 465 VAL A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 29 REMARK 465 LEU A 30 REMARK 465 GLY A 31 REMARK 465 LEU A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 VAL A 37 REMARK 465 SER A 38 REMARK 465 ASN A 39 REMARK 465 SER A 40 REMARK 465 LEU A 41 REMARK 465 LYS A 42 REMARK 465 ARG A 43 REMARK 465 LEU A 44 REMARK 465 ARG A 45 REMARK 465 THR A 46 REMARK 465 ALA A 47 REMARK 465 LEU A 48 REMARK 465 ASN A 49 REMARK 465 ASP A 50 REMARK 465 ASP A 51 REMARK 465 LEU A 52 REMARK 465 PHE A 53 REMARK 465 LEU A 54 REMARK 465 ARG A 55 REMARK 465 THR A 56 REMARK 465 SER A 57 REMARK 465 LYS A 58 REMARK 465 GLY A 59 REMARK 465 MET A 60 REMARK 465 GLU A 61 REMARK 465 PRO A 62 REMARK 465 THR A 63 REMARK 465 PRO A 64 REMARK 465 TYR A 65 REMARK 465 ALA A 66 REMARK 465 LEU A 67 REMARK 465 HIS A 68 REMARK 465 LEU A 69 REMARK 465 ALA A 70 REMARK 465 GLU A 71 REMARK 465 PRO A 72 REMARK 465 VAL A 73 REMARK 465 ILE A 74 REMARK 465 TYR A 75 REMARK 465 ALA A 76 REMARK 465 LEU A 77 REMARK 465 ASN A 78 REMARK 465 THR A 79 REMARK 465 LEU A 80 REMARK 465 GLN A 81 REMARK 465 THR A 82 REMARK 465 ALA A 83 REMARK 465 LEU A 84 REMARK 465 THR A 85 REMARK 465 THR A 86 REMARK 465 ARG A 87 REMARK 465 ASP A 88 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 MET B -8 REMARK 465 ASN B -7 REMARK 465 ASN B -6 REMARK 465 GLY B -5 REMARK 465 GLU B -4 REMARK 465 GLY B -3 REMARK 465 GLU B -2 REMARK 465 VAL B -1 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 ASP B 5 REMARK 465 ILE B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 ASN B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 VAL B 13 REMARK 465 PHE B 14 REMARK 465 ASN B 15 REMARK 465 GLN B 16 REMARK 465 LEU B 17 REMARK 465 LEU B 18 REMARK 465 LEU B 19 REMARK 465 ASP B 20 REMARK 465 ARG B 21 REMARK 465 SER B 22 REMARK 465 VAL B 23 REMARK 465 SER B 24 REMARK 465 THR B 25 REMARK 465 ALA B 26 REMARK 465 GLY B 27 REMARK 465 GLU B 28 REMARK 465 LYS B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 LEU B 32 REMARK 465 THR B 33 REMARK 465 GLN B 34 REMARK 465 PRO B 35 REMARK 465 ALA B 36 REMARK 465 VAL B 37 REMARK 465 SER B 38 REMARK 465 ASN B 39 REMARK 465 SER B 40 REMARK 465 LEU B 41 REMARK 465 LYS B 42 REMARK 465 ARG B 43 REMARK 465 LEU B 44 REMARK 465 ARG B 45 REMARK 465 THR B 46 REMARK 465 ALA B 47 REMARK 465 LEU B 48 REMARK 465 ASN B 49 REMARK 465 ASP B 50 REMARK 465 ASP B 51 REMARK 465 LEU B 52 REMARK 465 PHE B 53 REMARK 465 LEU B 54 REMARK 465 ARG B 55 REMARK 465 THR B 56 REMARK 465 SER B 57 REMARK 465 LYS B 58 REMARK 465 GLY B 59 REMARK 465 MET B 60 REMARK 465 GLU B 61 REMARK 465 PRO B 62 REMARK 465 THR B 63 REMARK 465 PRO B 64 REMARK 465 TYR B 65 REMARK 465 ALA B 66 REMARK 465 LEU B 67 REMARK 465 HIS B 68 REMARK 465 LEU B 69 REMARK 465 ALA B 70 REMARK 465 GLU B 71 REMARK 465 PRO B 72 REMARK 465 VAL B 73 REMARK 465 ILE B 74 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 89 OG REMARK 470 PHE A 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 170 NE CZ NH1 NH2 REMARK 470 GLU A 214 CD OE1 OE2 REMARK 470 LYS A 219 CD CE NZ REMARK 470 LYS A 267 CD CE NZ REMARK 470 ILE A 271 CG2 CD1 REMARK 470 TYR B 75 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 77 CG CD1 CD2 REMARK 470 ASN B 78 CG OD1 ND2 REMARK 470 THR B 79 OG1 CG2 REMARK 470 LEU B 80 CG CD1 CD2 REMARK 470 GLN B 81 CG CD OE1 NE2 REMARK 470 THR B 82 OG1 CG2 REMARK 470 LEU B 84 CG CD1 CD2 REMARK 470 ARG B 170 CD NE CZ NH1 NH2 REMARK 470 LYS B 219 CD CE NZ REMARK 470 GLU B 300 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2032 - O HOH B 2054 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 105 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 148 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 178 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 240 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 123 71.29 -157.52 REMARK 500 GLN A 158 -91.04 -108.22 REMARK 500 ALA A 201 60.41 39.40 REMARK 500 LEU B 154 70.99 43.23 REMARK 500 GLN B 158 -87.42 -131.89 REMARK 500 ARG B 221 93.87 -68.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1304 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CRYSTALLISED DIFFERS FROM Q7WT50 REMARK 999 IN THAT IT CONTAINS A T192S MUTATION, REMARK 999 AN ADDITIONAL 8 RESIDUES (MNNGEGEV)AT THE N-TERMINUS REMARK 999 AND A 6 RESIDUE HISTIDINE TAG AT THE C-TERMINUS DBREF 1UTB A -8 -1 PDB 1UTB 1UTB -8 -1 DBREF 1UTB A 1 301 UNP Q7WT50 Q7WT50 1 301 DBREF 1UTB A 302 307 PDB 1UTB 1UTB 302 307 DBREF 1UTB B -8 -1 PDB 1UTB 1UTB -8 -1 DBREF 1UTB B 1 301 UNP Q7WT50 Q7WT50 1 301 DBREF 1UTB B 302 307 PDB 1UTB 1UTB 302 307 SEQADV 1UTB SER A 192 UNP Q7WT50 THR 192 ENGINEERED MUTATION SEQADV 1UTB SER B 139 UNP Q7WT50 LYS 139 CONFLICT SEQADV 1UTB SER B 192 UNP Q7WT50 THR 192 ENGINEERED MUTATION SEQADV 1UTB GLU B 247 UNP Q7WT50 GLN 247 CONFLICT SEQRES 1 A 315 MET ASN ASN GLY GLU GLY GLU VAL MET ASP LEU ARG ASP SEQRES 2 A 315 ILE ASP LEU ASN LEU LEU VAL VAL PHE ASN GLN LEU LEU SEQRES 3 A 315 LEU ASP ARG SER VAL SER THR ALA GLY GLU LYS LEU GLY SEQRES 4 A 315 LEU THR GLN PRO ALA VAL SER ASN SER LEU LYS ARG LEU SEQRES 5 A 315 ARG THR ALA LEU ASN ASP ASP LEU PHE LEU ARG THR SER SEQRES 6 A 315 LYS GLY MET GLU PRO THR PRO TYR ALA LEU HIS LEU ALA SEQRES 7 A 315 GLU PRO VAL ILE TYR ALA LEU ASN THR LEU GLN THR ALA SEQRES 8 A 315 LEU THR THR ARG ASP SER PHE ASP PRO PHE ALA SER THR SEQRES 9 A 315 ARG THR PHE ASN LEU ALA MET THR ASP ILE GLY GLU MET SEQRES 10 A 315 TYR PHE MET PRO PRO LEU MET GLU ALA LEU ALA GLN ARG SEQRES 11 A 315 ALA PRO HIS ILE GLN ILE SER THR LEU ARG PRO ASN ALA SEQRES 12 A 315 GLY ASN LEU LYS GLU ASP MET GLU SER GLY ALA VAL ASP SEQRES 13 A 315 LEU ALA LEU GLY LEU LEU PRO GLU LEU GLN THR GLY PHE SEQRES 14 A 315 PHE GLN ARG ARG LEU PHE ARG HIS ARG TYR VAL CYS MET SEQRES 15 A 315 PHE ARG LYS ASP HIS PRO SER ALA LYS SER PRO MET SER SEQRES 16 A 315 LEU LYS GLN PHE SER GLU LEU GLU HIS VAL GLY VAL VAL SEQRES 17 A 315 ALA LEU ASN THR GLY HIS GLY GLU VAL ASP GLY LEU LEU SEQRES 18 A 315 GLU ARG ALA GLY ILE LYS ARG ARG MET ARG LEU VAL VAL SEQRES 19 A 315 PRO HIS PHE ILE ALA ILE GLY PRO ILE LEU HIS SER THR SEQRES 20 A 315 ASP LEU ILE ALA THR VAL PRO GLN ARG PHE ALA VAL ARG SEQRES 21 A 315 CYS GLU VAL PRO PHE GLY LEU THR THR SER PRO HIS PRO SEQRES 22 A 315 ALA LYS LEU PRO ASP ILE ALA ILE ASN LEU PHE TRP HIS SEQRES 23 A 315 ALA LYS TYR ASN ARG ASP PRO GLY ASN MET TRP LEU ARG SEQRES 24 A 315 GLN LEU PHE VAL GLU LEU PHE SER GLU ALA HIS HIS HIS SEQRES 25 A 315 HIS HIS HIS SEQRES 1 B 315 MET ASN ASN GLY GLU GLY GLU VAL MET ASP LEU ARG ASP SEQRES 2 B 315 ILE ASP LEU ASN LEU LEU VAL VAL PHE ASN GLN LEU LEU SEQRES 3 B 315 LEU ASP ARG SER VAL SER THR ALA GLY GLU LYS LEU GLY SEQRES 4 B 315 LEU THR GLN PRO ALA VAL SER ASN SER LEU LYS ARG LEU SEQRES 5 B 315 ARG THR ALA LEU ASN ASP ASP LEU PHE LEU ARG THR SER SEQRES 6 B 315 LYS GLY MET GLU PRO THR PRO TYR ALA LEU HIS LEU ALA SEQRES 7 B 315 GLU PRO VAL ILE TYR ALA LEU ASN THR LEU GLN THR ALA SEQRES 8 B 315 LEU THR THR ARG ASP SER PHE ASP PRO PHE ALA SER THR SEQRES 9 B 315 ARG THR PHE ASN LEU ALA MET THR ASP ILE GLY GLU MET SEQRES 10 B 315 TYR PHE MET PRO PRO LEU MET GLU ALA LEU ALA GLN ARG SEQRES 11 B 315 ALA PRO HIS ILE GLN ILE SER THR LEU ARG PRO ASN ALA SEQRES 12 B 315 GLY ASN LEU SER GLU ASP MET GLU SER GLY ALA VAL ASP SEQRES 13 B 315 LEU ALA LEU GLY LEU LEU PRO GLU LEU GLN THR GLY PHE SEQRES 14 B 315 PHE GLN ARG ARG LEU PHE ARG HIS ARG TYR VAL CYS MET SEQRES 15 B 315 PHE ARG LYS ASP HIS PRO SER ALA LYS SER PRO MET SER SEQRES 16 B 315 LEU LYS GLN PHE SER GLU LEU GLU HIS VAL GLY VAL VAL SEQRES 17 B 315 ALA LEU ASN THR GLY HIS GLY GLU VAL ASP GLY LEU LEU SEQRES 18 B 315 GLU ARG ALA GLY ILE LYS ARG ARG MET ARG LEU VAL VAL SEQRES 19 B 315 PRO HIS PHE ILE ALA ILE GLY PRO ILE LEU HIS SER THR SEQRES 20 B 315 ASP LEU ILE ALA THR VAL PRO GLU ARG PHE ALA VAL ARG SEQRES 21 B 315 CYS GLU VAL PRO PHE GLY LEU THR THR SER PRO HIS PRO SEQRES 22 B 315 ALA LYS LEU PRO ASP ILE ALA ILE ASN LEU PHE TRP HIS SEQRES 23 B 315 ALA LYS TYR ASN ARG ASP PRO GLY ASN MET TRP LEU ARG SEQRES 24 B 315 GLN LEU PHE VAL GLU LEU PHE SER GLU ALA HIS HIS HIS SEQRES 25 B 315 HIS HIS HIS HET ACT A1305 4 HET ACT B1305 4 HET GOL A1303 6 HET GOL A1304 6 HET GOL B1302 6 HET GOL B1303 6 HET GOL B1304 6 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *113(H2 O1) HELIX 1 1 THR A 104 ALA A 123 1 20 HELIX 2 2 ASN A 137 SER A 144 1 8 HELIX 3 3 SER A 187 LEU A 194 1 8 HELIX 4 4 THR A 204 GLY A 207 5 4 HELIX 5 5 GLU A 208 ALA A 216 1 9 HELIX 6 6 ALA A 231 THR A 239 1 9 HELIX 7 7 GLN A 247 GLY A 258 1 12 HELIX 8 8 LYS A 280 ASN A 282 5 3 HELIX 9 9 ASP A 284 SER A 299 1 16 HELIX 10 10 TYR B 75 THR B 85 1 11 HELIX 11 11 THR B 104 ALA B 123 1 20 HELIX 12 12 ASN B 137 SER B 144 1 8 HELIX 13 13 SER B 187 LEU B 194 1 8 HELIX 14 14 THR B 204 GLY B 207 5 4 HELIX 15 15 GLU B 208 ALA B 216 1 9 HELIX 16 16 ALA B 231 THR B 239 1 9 HELIX 17 17 GLU B 247 ARG B 252 1 6 HELIX 18 18 CYS B 253 GLY B 258 1 6 HELIX 19 19 LYS B 280 ASN B 282 5 3 HELIX 20 20 ASP B 284 SER B 299 1 16 SHEET 1 AA 7 PHE A 161 HIS A 169 0 SHEET 2 AA 7 ILE A 271 HIS A 278 -1 O ILE A 271 N HIS A 169 SHEET 3 AA 7 LEU A 149 GLY A 152 -1 O ALA A 150 N PHE A 276 SHEET 4 AA 7 THR A 98 ALA A 102 1 O ALA A 102 N LEU A 151 SHEET 5 AA 7 GLN A 127 LEU A 131 1 O GLN A 127 N PHE A 99 SHEET 6 AA 7 ARG B 221 VAL B 226 1 O ARG B 223 N ILE A 128 SHEET 7 AA 7 GLU B 195 VAL B 199 1 O HIS B 196 N LEU B 224 SHEET 1 AB10 LEU A 259 PRO A 263 0 SHEET 2 AB10 TYR A 171 ARG A 176 -1 O CYS A 173 N SER A 262 SHEET 3 AB10 ILE A 242 PRO A 246 -1 O ALA A 243 N MET A 174 SHEET 4 AB10 GLU A 195 VAL A 199 1 O GLU A 195 N ILE A 242 SHEET 5 AB10 ARG A 221 VAL A 226 1 O ARG A 221 N HIS A 196 SHEET 6 AB10 GLN B 127 LEU B 131 1 O ILE B 128 N VAL A 225 SHEET 7 AB10 THR B 98 ALA B 102 1 O PHE B 99 N SER B 129 SHEET 8 AB10 LEU B 149 GLY B 152 1 O LEU B 149 N ALA B 102 SHEET 9 AB10 ILE B 271 HIS B 278 -1 O ASN B 274 N GLY B 152 SHEET 10 AB10 PHE B 161 HIS B 169 -1 O PHE B 162 N TRP B 277 SHEET 1 BA 3 ALA B 243 PRO B 246 0 SHEET 2 BA 3 TYR B 171 ARG B 176 -1 O VAL B 172 N VAL B 245 SHEET 3 BA 3 LEU B 259 PRO B 263 -1 O THR B 260 N PHE B 175 CISPEP 1 SER A 184 PRO A 185 0 -3.23 CISPEP 2 SER B 184 PRO B 185 0 5.86 SITE 1 AC1 5 THR A 104 ILE A 106 HIS A 169 HIS A 206 SITE 2 AC1 5 ILE A 273 SITE 1 AC2 7 THR B 104 ILE B 106 GLY B 107 HIS B 169 SITE 2 AC2 7 HIS B 206 ILE B 273 HOH B2054 SITE 1 AC3 9 ASP A 105 ARG A 132 HIS A 228 HOH A2056 SITE 2 AC3 9 HOH A2057 HOH A2058 ASP B 105 ARG B 132 SITE 3 AC3 9 HIS B 228 SITE 1 AC4 8 GLU A 195 ARG A 223 THR A 239 ASP A 240 SITE 2 AC4 8 LEU A 241 HOH A2059 MET B 116 ALA B 120 SITE 1 AC5 11 MET A 109 ILE A 230 PHE A 257 HOH A2044 SITE 2 AC5 11 MET B 109 PHE B 229 ILE B 230 ILE B 232 SITE 3 AC5 11 GLY B 233 PHE B 249 PHE B 257 SITE 1 AC6 6 MET A 116 ALA A 120 GLU B 195 ARG B 223 SITE 2 AC6 6 THR B 239 ASP B 240 SITE 1 AC7 10 TYR B 171 VAL B 199 HIS B 206 VAL B 209 SITE 2 AC7 10 PHE B 229 THR B 244 VAL B 245 PRO B 246 SITE 3 AC7 10 HOH B2031 HOH B2053 CRYST1 107.148 107.148 296.654 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009333 0.005388 0.000000 0.00000 SCALE2 0.000000 0.010777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003371 0.00000 MTRIX1 1 -0.653800 -0.735000 0.180000 114.88390 1 MTRIX2 1 -0.736200 0.562800 -0.375800 86.65270 1 MTRIX3 1 0.174900 -0.378200 -0.909000 134.90210 1