data_1UTX # _entry.id 1UTX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.294 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1UTX PDBE EBI-13906 WWPDB D_1290013906 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UTX _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-12-12 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Razeto, A.' 1 ? 'Rumpel, S.' 2 ? 'Pillar, C.M.' 3 ? 'Gilmore, M.S.' 4 ? 'Becker, S.' 5 ? 'Zweckstetter, M.' 6 ? # _citation.id primary _citation.title 'Structure and DNA-Binding Properties of the Cytolysin Regulator CylR2 from Enterococcus Faecalis' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 23 _citation.page_first 3632 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15359276 _citation.pdbx_database_id_DOI 10.1038/SJ.EMBOJ.7600367 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rumpel, S.' 1 primary 'Razeto, A.' 2 primary 'Pillar, C.M.' 3 primary 'Vijayan, V.' 4 primary 'Taylor, A.' 5 primary 'Giller, K.' 6 primary 'Gilmore, M.S.' 7 primary 'Becker, S.' 8 primary 'Zweckstetter, M.' 9 # _cell.entry_id 1UTX _cell.length_a 63.679 _cell.length_b 63.679 _cell.length_c 41.187 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UTX _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man CYLR2 7724.988 2 ? ? ? ? 2 non-polymer syn 'IODIDE ION' 126.904 9 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 193 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE _entity_poly.pdbx_seq_one_letter_code_can MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 ILE n 1 4 ASN n 1 5 ASN n 1 6 LEU n 1 7 LYS n 1 8 LEU n 1 9 ILE n 1 10 ARG n 1 11 GLU n 1 12 LYS n 1 13 LYS n 1 14 LYS n 1 15 ILE n 1 16 SER n 1 17 GLN n 1 18 SER n 1 19 GLU n 1 20 LEU n 1 21 ALA n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 GLU n 1 26 VAL n 1 27 SER n 1 28 ARG n 1 29 GLN n 1 30 THR n 1 31 ILE n 1 32 ASN n 1 33 GLY n 1 34 ILE n 1 35 GLU n 1 36 LYS n 1 37 ASN n 1 38 LYS n 1 39 TYR n 1 40 ASN n 1 41 PRO n 1 42 SER n 1 43 LEU n 1 44 GLN n 1 45 LEU n 1 46 ALA n 1 47 LEU n 1 48 LYS n 1 49 ILE n 1 50 ALA n 1 51 TYR n 1 52 TYR n 1 53 LEU n 1 54 ASN n 1 55 THR n 1 56 PRO n 1 57 LEU n 1 58 GLU n 1 59 ASP n 1 60 ILE n 1 61 PHE n 1 62 GLN n 1 63 TRP n 1 64 GLN n 1 65 PRO n 1 66 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'FA2-2(PAM714)' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ENTEROCOCCUS FAECALIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1351 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 19433 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET32A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'DSM 20478, NCDO 581, NCIB 775, NCTC 775' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8VL32 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8VL32 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UTX A 1 ? 66 ? Q8VL32 1 ? 66 ? 1 66 2 1 1UTX B 1 ? 66 ? Q8VL32 1 ? 66 ? 1 66 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1UTX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 54.3 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'SALTING-IN BY DIALYSIS AGAINST 0.2 M NAI, 10 % GLYCEROL, 50 MM HEPES PH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2003-01-15 _diffrn_detector.details 'COSMIC MIRRORS CMF12-38CU6' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'SIEMENS M18X' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UTX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 13086 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.10400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.0000 _reflns.B_iso_Wilson_estimate 25.00 _reflns.pdbx_redundancy 14.800 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.44000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.800 _reflns_shell.pdbx_redundancy 13.20 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UTX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13208 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.76 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.155 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.153 _refine.ls_R_factor_R_free 0.193 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 651 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.B_iso_mean 25.00 _refine.aniso_B[1][1] -0.19000 _refine.aniso_B[2][2] -0.19000 _refine.aniso_B[3][3] 0.38000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.058 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.982 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1071 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 193 _refine_hist.number_atoms_total 1274 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1090 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1020 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.219 1.981 ? 1475 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.812 3.000 ? 2392 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.857 5.000 ? 130 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.079 0.200 ? 173 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1166 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 184 'X-RAY DIFFRACTION' ? r_nbd_refined 0.231 0.200 ? 328 'X-RAY DIFFRACTION' ? r_nbd_other 0.246 0.200 ? 1178 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.121 0.200 ? 739 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.222 0.200 ? 117 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.087 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.124 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.384 0.200 ? 30 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.333 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.725 1.500 ? 664 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.327 2.000 ? 1078 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.028 3.000 ? 426 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.284 4.500 ? 397 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.94 _refine_ls_shell.number_reflns_R_work 896 _refine_ls_shell.R_factor_R_work 0.2200 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2840 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.721000 _struct_ncs_oper.matrix[1][2] -0.212000 _struct_ncs_oper.matrix[1][3] 0.659000 _struct_ncs_oper.matrix[2][1] -0.213000 _struct_ncs_oper.matrix[2][2] -0.838000 _struct_ncs_oper.matrix[2][3] -0.502000 _struct_ncs_oper.matrix[3][1] 0.659000 _struct_ncs_oper.matrix[3][2] -0.502000 _struct_ncs_oper.matrix[3][3] 0.560000 _struct_ncs_oper.vector[1] 42.92585 _struct_ncs_oper.vector[2] 18.76443 _struct_ncs_oper.vector[3] -11.67423 # _struct.entry_id 1UTX _struct.title 'Regulation of Cytolysin Expression by Enterococcus faecalis: Role of CylR2' _struct.pdbx_descriptor CYLR2 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UTX _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA-BINDING PROTEIN, TRANSCRIPTIONAL REPRESSOR, REGULATION OF CYTOLYSIN OPERON, HELIX-TURN-HELIX, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 2 ? M N N 4 ? N N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 5 ? LYS A 13 ? ASN A 5 LYS A 13 1 ? 9 HELX_P HELX_P2 2 SER A 16 ? GLU A 25 ? SER A 16 GLU A 25 1 ? 10 HELX_P HELX_P3 3 ARG A 28 ? LYS A 36 ? ARG A 28 LYS A 36 1 ? 9 HELX_P HELX_P4 4 SER A 42 ? LEU A 53 ? SER A 42 LEU A 53 1 ? 12 HELX_P HELX_P5 5 LEU A 57 ? ILE A 60 ? LEU A 57 ILE A 60 1 ? 4 HELX_P HELX_P6 6 ASN B 5 ? LYS B 13 ? ASN B 5 LYS B 13 1 ? 9 HELX_P HELX_P7 7 SER B 16 ? GLU B 25 ? SER B 16 GLU B 25 1 ? 10 HELX_P HELX_P8 8 ARG B 28 ? LYS B 36 ? ARG B 28 LYS B 36 1 ? 9 HELX_P HELX_P9 9 SER B 42 ? LEU B 53 ? SER B 42 LEU B 53 1 ? 12 HELX_P HELX_P10 10 LEU B 57 ? ILE B 60 ? LEU B 57 ILE B 60 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? K NA . NA ? ? ? 1_555 A GLU 58 OE2 ? ? B NA 1074 A GLU 58 1_555 ? ? ? ? ? ? ? 2.585 ? metalc2 metalc ? ? K NA . NA ? ? ? 1_555 B GLU 58 OE1 ? ? B NA 1074 B GLU 58 1_555 ? ? ? ? ? ? ? 2.323 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? BA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel BA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 MET A 1 ? ASN A 4 ? MET A 1 ASN A 4 AA 2 PHE A 61 ? GLN A 64 ? PHE A 61 GLN A 64 BA 1 MET B 1 ? ASN B 4 ? MET B 1 ASN B 4 BA 2 PHE B 61 ? GLN B 64 ? PHE B 61 GLN B 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 3 ? N ILE A 3 O GLN A 62 ? O GLN A 62 BA 1 2 N ILE B 3 ? N ILE B 3 O GLN B 62 ? O GLN B 62 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IOD A1067' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A1068' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A1069' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A1070' AC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A1072' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE IOD B1067' AC7 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IOD B1068' AC8 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD B1069' AC9 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NA B1074' BC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD B1075' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 32 ? ASN A 32 . ? 1_555 ? 2 AC1 3 LYS A 38 ? LYS A 38 . ? 1_555 ? 3 AC1 3 HOH M . ? HOH A 2055 . ? 1_555 ? 4 AC2 2 HOH M . ? HOH A 2025 . ? 1_555 ? 5 AC2 2 HOH M . ? HOH A 2055 . ? 1_555 ? 6 AC3 2 GLN A 44 ? GLN A 44 . ? 1_555 ? 7 AC3 2 LYS A 48 ? LYS A 48 . ? 1_555 ? 8 AC4 2 HOH M . ? HOH A 2014 . ? 1_555 ? 9 AC4 2 HOH M . ? HOH A 2087 . ? 1_555 ? 10 AC5 1 IOD L . ? IOD B 1075 . ? 1_555 ? 11 AC6 4 SER B 16 ? SER B 16 . ? 1_555 ? 12 AC6 4 GLN B 17 ? GLN B 17 . ? 1_555 ? 13 AC6 4 HOH N . ? HOH B 2023 . ? 1_555 ? 14 AC6 4 HOH N . ? HOH B 2027 . ? 1_555 ? 15 AC7 3 LYS B 14 ? LYS B 14 . ? 1_555 ? 16 AC7 3 ILE B 15 ? ILE B 15 . ? 1_555 ? 17 AC7 3 HOH N . ? HOH B 2020 . ? 1_555 ? 18 AC8 2 GLN B 44 ? GLN B 44 . ? 1_555 ? 19 AC8 2 HOH N . ? HOH B 2029 . ? 1_555 ? 20 AC9 3 GLU A 58 ? GLU A 58 . ? 1_555 ? 21 AC9 3 LEU B 57 ? LEU B 57 . ? 1_555 ? 22 AC9 3 GLU B 58 ? GLU B 58 . ? 1_555 ? 23 BC1 1 IOD G . ? IOD A 1072 . ? 1_555 ? # _database_PDB_matrix.entry_id 1UTX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UTX _atom_sites.fract_transf_matrix[1][1] 0.015704 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015704 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024279 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 GLU 66 66 66 GLU GLU A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ILE 2 2 2 ILE ILE B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 ASN 5 5 5 ASN ASN B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 GLN 17 17 17 GLN GLN B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 GLN 29 29 29 GLN GLN B . n B 1 30 THR 30 30 30 THR THR B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 ASN 32 32 32 ASN ASN B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 TYR 39 39 39 TYR TYR B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 PRO 41 41 41 PRO PRO B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 GLN 44 44 44 GLN GLN B . n B 1 45 LEU 45 45 45 LEU LEU B . n B 1 46 ALA 46 46 46 ALA ALA B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 TYR 52 52 52 TYR TYR B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 THR 55 55 55 THR THR B . n B 1 56 PRO 56 56 56 PRO PRO B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 GLU 58 58 58 GLU GLU B . n B 1 59 ASP 59 59 59 ASP ASP B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 PHE 61 61 61 PHE PHE B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 TRP 63 63 63 TRP TRP B . n B 1 64 GLN 64 64 64 GLN GLN B . n B 1 65 PRO 65 65 65 PRO PRO B . n B 1 66 GLU 66 66 66 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD 1 1067 1067 IOD IOD A . D 2 IOD 1 1068 1068 IOD IOD A . E 2 IOD 1 1069 1069 IOD IOD A . F 2 IOD 1 1070 1070 IOD IOD A . G 2 IOD 1 1072 1072 IOD IOD A . H 2 IOD 1 1067 1067 IOD IOD B . I 2 IOD 1 1068 1068 IOD IOD B . J 2 IOD 1 1069 1069 IOD IOD B . K 3 NA 1 1074 1074 NA NA B . L 2 IOD 1 1075 1075 IOD IOD B . M 4 HOH 1 2001 2001 HOH HOH A . M 4 HOH 2 2002 2002 HOH HOH A . M 4 HOH 3 2003 2003 HOH HOH A . M 4 HOH 4 2004 2004 HOH HOH A . M 4 HOH 5 2005 2005 HOH HOH A . M 4 HOH 6 2006 2006 HOH HOH A . M 4 HOH 7 2007 2007 HOH HOH A . M 4 HOH 8 2008 2008 HOH HOH A . M 4 HOH 9 2009 2009 HOH HOH A . M 4 HOH 10 2010 2010 HOH HOH A . M 4 HOH 11 2011 2011 HOH HOH A . M 4 HOH 12 2012 2012 HOH HOH A . M 4 HOH 13 2013 2013 HOH HOH A . M 4 HOH 14 2014 2014 HOH HOH A . M 4 HOH 15 2015 2015 HOH HOH A . M 4 HOH 16 2016 2016 HOH HOH A . M 4 HOH 17 2017 2017 HOH HOH A . M 4 HOH 18 2018 2018 HOH HOH A . M 4 HOH 19 2019 2019 HOH HOH A . M 4 HOH 20 2020 2020 HOH HOH A . M 4 HOH 21 2021 2021 HOH HOH A . M 4 HOH 22 2022 2022 HOH HOH A . M 4 HOH 23 2023 2023 HOH HOH A . M 4 HOH 24 2024 2024 HOH HOH A . M 4 HOH 25 2025 2025 HOH HOH A . M 4 HOH 26 2026 2026 HOH HOH A . M 4 HOH 27 2027 2027 HOH HOH A . M 4 HOH 28 2028 2028 HOH HOH A . M 4 HOH 29 2029 2029 HOH HOH A . M 4 HOH 30 2030 2030 HOH HOH A . M 4 HOH 31 2031 2031 HOH HOH A . M 4 HOH 32 2032 2032 HOH HOH A . M 4 HOH 33 2033 2033 HOH HOH A . M 4 HOH 34 2034 2034 HOH HOH A . M 4 HOH 35 2035 2035 HOH HOH A . M 4 HOH 36 2036 2036 HOH HOH A . M 4 HOH 37 2037 2037 HOH HOH A . M 4 HOH 38 2038 2038 HOH HOH A . M 4 HOH 39 2039 2039 HOH HOH A . M 4 HOH 40 2040 2040 HOH HOH A . M 4 HOH 41 2041 2041 HOH HOH A . M 4 HOH 42 2042 2042 HOH HOH A . M 4 HOH 43 2043 2043 HOH HOH A . M 4 HOH 44 2044 2044 HOH HOH A . M 4 HOH 45 2045 2045 HOH HOH A . M 4 HOH 46 2046 2046 HOH HOH A . M 4 HOH 47 2047 2047 HOH HOH A . M 4 HOH 48 2048 2048 HOH HOH A . M 4 HOH 49 2049 2049 HOH HOH A . M 4 HOH 50 2050 2050 HOH HOH A . M 4 HOH 51 2051 2051 HOH HOH A . M 4 HOH 52 2052 2052 HOH HOH A . M 4 HOH 53 2053 2053 HOH HOH A . M 4 HOH 54 2054 2054 HOH HOH A . M 4 HOH 55 2055 2055 HOH HOH A . M 4 HOH 56 2056 2056 HOH HOH A . M 4 HOH 57 2057 2057 HOH HOH A . M 4 HOH 58 2058 2058 HOH HOH A . M 4 HOH 59 2059 2059 HOH HOH A . M 4 HOH 60 2060 2060 HOH HOH A . M 4 HOH 61 2061 2061 HOH HOH A . M 4 HOH 62 2062 2062 HOH HOH A . M 4 HOH 63 2063 2063 HOH HOH A . M 4 HOH 64 2064 2064 HOH HOH A . M 4 HOH 65 2065 2065 HOH HOH A . M 4 HOH 66 2066 2066 HOH HOH A . M 4 HOH 67 2067 2067 HOH HOH A . M 4 HOH 68 2068 2068 HOH HOH A . M 4 HOH 69 2069 2069 HOH HOH A . M 4 HOH 70 2070 2070 HOH HOH A . M 4 HOH 71 2071 2071 HOH HOH A . M 4 HOH 72 2072 2072 HOH HOH A . M 4 HOH 73 2073 2073 HOH HOH A . M 4 HOH 74 2074 2074 HOH HOH A . M 4 HOH 75 2075 2075 HOH HOH A . M 4 HOH 76 2076 2076 HOH HOH A . M 4 HOH 77 2077 2077 HOH HOH A . M 4 HOH 78 2078 2078 HOH HOH A . M 4 HOH 79 2079 2079 HOH HOH A . M 4 HOH 80 2080 2080 HOH HOH A . M 4 HOH 81 2081 2081 HOH HOH A . M 4 HOH 82 2082 2082 HOH HOH A . M 4 HOH 83 2083 2083 HOH HOH A . M 4 HOH 84 2084 2084 HOH HOH A . M 4 HOH 85 2085 2085 HOH HOH A . M 4 HOH 86 2086 2086 HOH HOH A . M 4 HOH 87 2087 2087 HOH HOH A . M 4 HOH 88 2088 2088 HOH HOH A . M 4 HOH 89 2089 2089 HOH HOH A . M 4 HOH 90 2090 2090 HOH HOH A . M 4 HOH 91 2091 2091 HOH HOH A . M 4 HOH 92 2092 2092 HOH HOH A . M 4 HOH 93 2093 2093 HOH HOH A . M 4 HOH 94 2094 2094 HOH HOH A . M 4 HOH 95 2095 2095 HOH HOH A . M 4 HOH 96 2096 2096 HOH HOH A . M 4 HOH 97 2097 2097 HOH HOH A . M 4 HOH 98 2098 2098 HOH HOH A . M 4 HOH 99 2099 2099 HOH HOH A . M 4 HOH 100 2100 2100 HOH HOH A . M 4 HOH 101 2101 2101 HOH HOH A . M 4 HOH 102 2102 2102 HOH HOH A . N 4 HOH 1 2001 2001 HOH HOH B . N 4 HOH 2 2002 2002 HOH HOH B . N 4 HOH 3 2003 2003 HOH HOH B . N 4 HOH 4 2004 2004 HOH HOH B . N 4 HOH 5 2005 2005 HOH HOH B . N 4 HOH 6 2006 2006 HOH HOH B . N 4 HOH 7 2007 2007 HOH HOH B . N 4 HOH 8 2008 2008 HOH HOH B . N 4 HOH 9 2009 2009 HOH HOH B . N 4 HOH 10 2010 2010 HOH HOH B . N 4 HOH 11 2011 2011 HOH HOH B . N 4 HOH 12 2012 2012 HOH HOH B . N 4 HOH 13 2013 2013 HOH HOH B . N 4 HOH 14 2014 2014 HOH HOH B . N 4 HOH 15 2015 2015 HOH HOH B . N 4 HOH 16 2016 2016 HOH HOH B . N 4 HOH 17 2017 2017 HOH HOH B . N 4 HOH 18 2018 2018 HOH HOH B . N 4 HOH 19 2019 2019 HOH HOH B . N 4 HOH 20 2020 2020 HOH HOH B . N 4 HOH 21 2021 2021 HOH HOH B . N 4 HOH 22 2022 2022 HOH HOH B . N 4 HOH 23 2023 2023 HOH HOH B . N 4 HOH 24 2024 2024 HOH HOH B . N 4 HOH 25 2025 2025 HOH HOH B . N 4 HOH 26 2026 2026 HOH HOH B . N 4 HOH 27 2027 2027 HOH HOH B . N 4 HOH 28 2028 2028 HOH HOH B . N 4 HOH 29 2029 2029 HOH HOH B . N 4 HOH 30 2030 2030 HOH HOH B . N 4 HOH 31 2031 2031 HOH HOH B . N 4 HOH 32 2032 2032 HOH HOH B . N 4 HOH 33 2033 2033 HOH HOH B . N 4 HOH 34 2034 2034 HOH HOH B . N 4 HOH 35 2035 2035 HOH HOH B . N 4 HOH 36 2036 2036 HOH HOH B . N 4 HOH 37 2037 2037 HOH HOH B . N 4 HOH 38 2038 2038 HOH HOH B . N 4 HOH 39 2039 2039 HOH HOH B . N 4 HOH 40 2040 2040 HOH HOH B . N 4 HOH 41 2041 2041 HOH HOH B . N 4 HOH 42 2042 2042 HOH HOH B . N 4 HOH 43 2043 2043 HOH HOH B . N 4 HOH 44 2044 2044 HOH HOH B . N 4 HOH 45 2045 2045 HOH HOH B . N 4 HOH 46 2046 2046 HOH HOH B . N 4 HOH 47 2047 2047 HOH HOH B . N 4 HOH 48 2048 2048 HOH HOH B . N 4 HOH 49 2049 2049 HOH HOH B . N 4 HOH 50 2050 2050 HOH HOH B . N 4 HOH 51 2051 2051 HOH HOH B . N 4 HOH 52 2052 2052 HOH HOH B . N 4 HOH 53 2053 2053 HOH HOH B . N 4 HOH 54 2054 2054 HOH HOH B . N 4 HOH 55 2055 2055 HOH HOH B . N 4 HOH 56 2056 2056 HOH HOH B . N 4 HOH 57 2057 2057 HOH HOH B . N 4 HOH 58 2058 2058 HOH HOH B . N 4 HOH 59 2059 2059 HOH HOH B . N 4 HOH 60 2060 2060 HOH HOH B . N 4 HOH 61 2061 2061 HOH HOH B . N 4 HOH 62 2062 2062 HOH HOH B . N 4 HOH 63 2063 2063 HOH HOH B . N 4 HOH 64 2064 2064 HOH HOH B . N 4 HOH 65 2065 2065 HOH HOH B . N 4 HOH 66 2066 2066 HOH HOH B . N 4 HOH 67 2067 2067 HOH HOH B . N 4 HOH 68 2068 2068 HOH HOH B . N 4 HOH 69 2069 2069 HOH HOH B . N 4 HOH 70 2070 2070 HOH HOH B . N 4 HOH 71 2071 2071 HOH HOH B . N 4 HOH 72 2072 2072 HOH HOH B . N 4 HOH 73 2073 2073 HOH HOH B . N 4 HOH 74 2074 2074 HOH HOH B . N 4 HOH 75 2075 2075 HOH HOH B . N 4 HOH 76 2076 2076 HOH HOH B . N 4 HOH 77 2077 2077 HOH HOH B . N 4 HOH 78 2078 2078 HOH HOH B . N 4 HOH 79 2079 2079 HOH HOH B . N 4 HOH 80 2080 2080 HOH HOH B . N 4 HOH 81 2081 2081 HOH HOH B . N 4 HOH 82 2082 2082 HOH HOH B . N 4 HOH 83 2083 2083 HOH HOH B . N 4 HOH 84 2084 2084 HOH HOH B . N 4 HOH 85 2085 2085 HOH HOH B . N 4 HOH 86 2086 2086 HOH HOH B . N 4 HOH 87 2087 2087 HOH HOH B . N 4 HOH 88 2088 2088 HOH HOH B . N 4 HOH 89 2089 2089 HOH HOH B . N 4 HOH 90 2090 2090 HOH HOH B . N 4 HOH 91 2091 2091 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 58 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 58 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id K _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1074 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OE1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id GLU _pdbx_struct_conn_angle.ptnr3_label_seq_id 58 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr3_auth_seq_id 58 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 117.9 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-16 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-05-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.title' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language DENZO 'data reduction' . ? 1 ? ? ? ? SCALEPACK 'data scaling' . ? 2 ? ? ? ? SHELXD phasing . ? 3 ? ? ? ? SHELXE phasing . ? 4 ? ? ? ? REFMAC refinement 5.1.24 ? 5 ? ? ? ? # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; 700 ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2064 ? ? O A HOH 2065 ? ? 1.76 2 1 I B IOD 1067 ? C O B HOH 2027 ? ? 2.02 3 1 OE1 A GLN 44 ? ? O A HOH 2076 ? ? 2.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CE ? A MET 1 CE 2 1 Y 1 A LYS 12 ? CD ? A LYS 12 CD 3 1 Y 1 A LYS 12 ? CE ? A LYS 12 CE 4 1 Y 1 A LYS 12 ? NZ ? A LYS 12 NZ 5 1 Y 1 B MET 1 ? CG ? B MET 1 CG 6 1 Y 1 B MET 1 ? SD ? B MET 1 SD 7 1 Y 1 B MET 1 ? CE ? B MET 1 CE 8 1 Y 1 B LYS 12 ? CG ? B LYS 12 CG 9 1 Y 1 B LYS 12 ? CD ? B LYS 12 CD 10 1 Y 1 B LYS 12 ? CE ? B LYS 12 CE 11 1 Y 1 B LYS 12 ? NZ ? B LYS 12 NZ 12 1 Y 1 B LYS 14 ? CD ? B LYS 14 CD 13 1 Y 1 B LYS 14 ? CE ? B LYS 14 CE 14 1 Y 1 B LYS 14 ? NZ ? B LYS 14 NZ 15 1 Y 1 B LYS 36 ? CE ? B LYS 36 CE 16 1 Y 1 B LYS 36 ? NZ ? B LYS 36 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 'SODIUM ION' NA 4 water HOH #