HEADER HYDROLASE/DNA 10-JAN-04 1UUT TITLE THE NUCLEASE DOMAIN OF ADENO-ASSOCIATED VIRUS REP COMPLEXED WITH THE TITLE 2 RBE' STEMLOOP OF THE VIRAL INVERTED TERMINAL REPEAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: REP PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NUCLEASE DOMAIN, RESIDUES 1-197; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ALL RESIDUES ARE DELETED AFTER S197; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*AP*GP*CP*TP*CP*TP*TP*TP*GP *AP*GP*CP*TP*G)-3'; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RBE STEMLOOP, RESIDUES 1-15; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS 5; SOURCE 3 ORGANISM_TAXID: 82300; SOURCE 4 STRAIN: SEROTYPE 5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS 5; SOURCE 13 ORGANISM_TAXID: 82300 KEYWDS HYDROLASE/DNA, NUCLEASE-COMPLEX, VIRAL PROTEIN, NUCLEASE, KEYWDS 2 REPLICATION, PROTEIN-DNA, STEMLOOP, HELICASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.DYDA,A.B.HICKMAN,D.R.RONNING,Z.N.PEREZ,R.M.KOTIN REVDAT 3 13-DEC-23 1UUT 1 LINK REVDAT 2 24-FEB-09 1UUT 1 VERSN REVDAT 1 19-FEB-04 1UUT 0 JRNL AUTH A.B.HICKMAN,D.R.RONNING,Z.N.PEREZ,R.M.KOTIN,F.DYDA JRNL TITL THE NUCLEASE DOMAIN OF ADENO-ASSOCIATED VIRUS REP JRNL TITL 2 COORDINATES REPLICATION INITIATION USING TWO DISTINCT DNA JRNL TITL 3 RECOGNITION INTERFACES JRNL REF MOL.CELL V. 13 403 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 14967147 JRNL DOI 10.1016/S1097-2765(04)00023-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 37161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.57 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2958 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 92 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3184 REMARK 3 NUCLEIC ACID ATOMS : 606 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.298 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.01 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.194 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1290014354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER MIRROR REMARK 200 OPTICS : MULTILAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.16100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1M55 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.91500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.35250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.35250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE NUCLEASE DOMAIN OF THE REP PROTEIN HAS REMARK 300 NO EVIDENCESHOWING OLIGOMERIZATION, AND MAY REMARK 300 THEREFORE BE CONSIDEREDTO BE A MONOMER. IN THIS REMARK 300 ENTRY, SINCE THE PROTEIN IS INCOMPLEX WITH DNA REMARK 300 FROM THE INVERTED TERMINAL REPEATSEUENCES OF AAV-5 REMARK 300 , THE COMPLEX IS ANNOTATED AS A DIMERICASSOCIATION REMARK 300 . REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ARG B 196 REMARK 465 SER B 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 13 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 97 123.19 -35.99 REMARK 500 PRO B 12 -143.66 -96.39 REMARK 500 ASP B 14 79.11 63.00 REMARK 500 GLU B 16 -12.79 -48.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2003 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B2006 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1196 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 82 OE1 REMARK 620 2 HIS A 89 NE2 86.2 REMARK 620 3 HIS A 91 NE2 82.6 73.6 REMARK 620 4 HOH A2110 O 95.9 177.2 104.8 REMARK 620 5 HOH A2116 O 80.0 77.1 146.7 105.1 REMARK 620 6 HOH A2117 O 158.3 80.1 77.5 97.3 112.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1197 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2038 O REMARK 620 2 HOH A2039 O 93.2 REMARK 620 3 HOH B2014 O 82.8 80.7 REMARK 620 4 HOH B2042 O 172.4 90.7 91.5 REMARK 620 5 HOH B2043 O 100.2 90.5 170.8 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1196 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 82 OE1 REMARK 620 2 HIS B 89 NE2 96.6 REMARK 620 3 HIS B 91 NE2 82.9 86.5 REMARK 620 4 HOH B2096 O 74.4 164.8 80.3 REMARK 620 5 HOH B2101 O 75.6 75.5 150.0 112.9 REMARK 620 6 HOH B2102 O 164.9 85.2 82.2 100.5 119.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1016 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT C 9 OP1 REMARK 620 2 HOH C2005 O 106.3 REMARK 620 3 HOH C2016 O 75.8 174.7 REMARK 620 4 HOH C2017 O 90.8 78.1 97.0 REMARK 620 5 HOH C2018 O 68.7 102.4 82.9 159.0 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C1016 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M55 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF THE ADENO ASSOCIATED VIRUS TYPE 5 REPPROTEIN DBREF 1UUT A 1 197 UNP Q9YJC1 Q9YJC1 1 197 DBREF 1UUT B 1 197 UNP Q9YJC1 Q9YJC1 1 197 DBREF 1UUT C 1 15 PDB 1UUT 1UUT 1 15 DBREF 1UUT D 1 15 PDB 1UUT 1UUT 1 15 SEQRES 1 A 197 MET ALA THR PHE TYR GLU VAL ILE VAL ARG VAL PRO PHE SEQRES 2 A 197 ASP VAL GLU GLU HIS LEU PRO GLY ILE SER ASP SER PHE SEQRES 3 A 197 VAL ASP TRP VAL THR GLY GLN ILE TRP GLU LEU PRO PRO SEQRES 4 A 197 GLU SER ASP LEU ASN LEU THR LEU VAL GLU GLN PRO GLN SEQRES 5 A 197 LEU THR VAL ALA ASP ARG ILE ARG ARG VAL PHE LEU TYR SEQRES 6 A 197 GLU TRP ASN LYS PHE SER LYS GLN GLU SER LYS PHE PHE SEQRES 7 A 197 VAL GLN PHE GLU LYS GLY SER GLU TYR PHE HIS LEU HIS SEQRES 8 A 197 THR LEU VAL GLU THR SER GLY ILE SER SER MET VAL LEU SEQRES 9 A 197 GLY ARG TYR VAL SER GLN ILE ARG ALA GLN LEU VAL LYS SEQRES 10 A 197 VAL VAL PHE GLN GLY ILE GLU PRO GLN ILE ASN ASP TRP SEQRES 11 A 197 VAL ALA ILE THR LYS VAL LYS LYS GLY GLY ALA ASN LYS SEQRES 12 A 197 VAL VAL ASP SER GLY TYR ILE PRO ALA TYR LEU LEU PRO SEQRES 13 A 197 LYS VAL GLN PRO GLU LEU GLN TRP ALA TRP THR ASN LEU SEQRES 14 A 197 ASP GLU TYR LYS LEU ALA ALA LEU ASN LEU GLU GLU ARG SEQRES 15 A 197 LYS ARG LEU VAL ALA GLN PHE LEU ALA GLU SER SER GLN SEQRES 16 A 197 ARG SER SEQRES 1 B 197 MET ALA THR PHE TYR GLU VAL ILE VAL ARG VAL PRO PHE SEQRES 2 B 197 ASP VAL GLU GLU HIS LEU PRO GLY ILE SER ASP SER PHE SEQRES 3 B 197 VAL ASP TRP VAL THR GLY GLN ILE TRP GLU LEU PRO PRO SEQRES 4 B 197 GLU SER ASP LEU ASN LEU THR LEU VAL GLU GLN PRO GLN SEQRES 5 B 197 LEU THR VAL ALA ASP ARG ILE ARG ARG VAL PHE LEU TYR SEQRES 6 B 197 GLU TRP ASN LYS PHE SER LYS GLN GLU SER LYS PHE PHE SEQRES 7 B 197 VAL GLN PHE GLU LYS GLY SER GLU TYR PHE HIS LEU HIS SEQRES 8 B 197 THR LEU VAL GLU THR SER GLY ILE SER SER MET VAL LEU SEQRES 9 B 197 GLY ARG TYR VAL SER GLN ILE ARG ALA GLN LEU VAL LYS SEQRES 10 B 197 VAL VAL PHE GLN GLY ILE GLU PRO GLN ILE ASN ASP TRP SEQRES 11 B 197 VAL ALA ILE THR LYS VAL LYS LYS GLY GLY ALA ASN LYS SEQRES 12 B 197 VAL VAL ASP SER GLY TYR ILE PRO ALA TYR LEU LEU PRO SEQRES 13 B 197 LYS VAL GLN PRO GLU LEU GLN TRP ALA TRP THR ASN LEU SEQRES 14 B 197 ASP GLU TYR LYS LEU ALA ALA LEU ASN LEU GLU GLU ARG SEQRES 15 B 197 LYS ARG LEU VAL ALA GLN PHE LEU ALA GLU SER SER GLN SEQRES 16 B 197 ARG SER SEQRES 1 C 15 DC DA DG DC DT DC DT DT DT DG DA DG DC SEQRES 2 C 15 DT DG SEQRES 1 D 15 DC DA DG DC DT DC DT DT DT DG DA DG DC SEQRES 2 D 15 DT DG HET MG A1196 1 HET MG A1197 1 HET CL A1198 1 HET MG B1196 1 HET MG C1016 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 5 MG 4(MG 2+) FORMUL 7 CL CL 1- FORMUL 10 HOH *470(H2 O) HELIX 1 1 ASP A 14 LEU A 19 1 6 HELIX 2 2 SER A 23 GLN A 33 1 11 HELIX 3 3 ASN A 44 VAL A 48 5 5 HELIX 4 4 GLU A 49 LYS A 72 1 24 HELIX 5 5 SER A 100 VAL A 119 1 20 HELIX 6 6 GLY A 148 LEU A 154 1 7 HELIX 7 7 LEU A 169 LYS A 173 5 5 HELIX 8 8 LEU A 174 LEU A 177 5 4 HELIX 9 9 ASN A 178 GLN A 195 1 18 HELIX 10 10 SER B 23 GLN B 33 1 11 HELIX 11 11 ASN B 44 VAL B 48 5 5 HELIX 12 12 GLU B 49 LYS B 72 1 24 HELIX 13 13 SER B 100 VAL B 119 1 20 HELIX 14 14 GLY B 148 LEU B 154 1 7 HELIX 15 15 LEU B 169 LYS B 173 5 5 HELIX 16 16 LEU B 174 LEU B 177 5 4 HELIX 17 17 ASN B 178 SER B 194 1 17 SHEET 1 AA 5 VAL A 131 ILE A 133 0 SHEET 2 AA 5 PHE A 4 ARG A 10 -1 O ILE A 8 N ALA A 132 SHEET 3 AA 5 PHE A 88 GLU A 95 -1 O LEU A 90 N VAL A 9 SHEET 4 AA 5 PHE A 77 LYS A 83 -1 O PHE A 78 N LEU A 93 SHEET 5 AA 5 LEU A 162 THR A 167 -1 N GLN A 163 O PHE A 81 SHEET 1 BA 3 VAL B 131 ILE B 133 0 SHEET 2 BA 3 THR B 3 VAL B 11 -1 O ILE B 8 N ALA B 132 SHEET 3 BA 3 VAL B 145 ASP B 146 -1 O VAL B 145 N PHE B 4 SHEET 1 BB 5 VAL B 131 ILE B 133 0 SHEET 2 BB 5 THR B 3 VAL B 11 -1 O ILE B 8 N ALA B 132 SHEET 3 BB 5 PHE B 88 GLU B 95 -1 O PHE B 88 N VAL B 11 SHEET 4 BB 5 PHE B 77 LYS B 83 -1 O PHE B 78 N LEU B 93 SHEET 5 BB 5 LEU B 162 THR B 167 -1 N GLN B 163 O PHE B 81 LINK OE1 GLU A 82 MG MG A1196 1555 1555 2.44 LINK NE2 HIS A 89 MG MG A1196 1555 1555 2.54 LINK NE2 HIS A 91 MG MG A1196 1555 1555 2.62 LINK MG MG A1196 O HOH A2110 1555 1555 2.07 LINK MG MG A1196 O HOH A2116 1555 1555 2.08 LINK MG MG A1196 O HOH A2117 1555 1555 2.08 LINK MG MG A1197 O HOH A2038 1555 1555 2.08 LINK MG MG A1197 O HOH A2039 1555 1555 2.08 LINK MG MG A1197 O HOH B2014 1555 3545 2.08 LINK MG MG A1197 O HOH B2042 1555 3545 2.08 LINK MG MG A1197 O HOH B2043 1555 3545 2.08 LINK OE1 GLU B 82 MG MG B1196 1555 1555 2.47 LINK NE2 HIS B 89 MG MG B1196 1555 1555 2.33 LINK NE2 HIS B 91 MG MG B1196 1555 1555 2.77 LINK MG MG B1196 O HOH B2096 1555 1555 2.07 LINK MG MG B1196 O HOH B2101 1555 1555 2.08 LINK MG MG B1196 O HOH B2102 1555 1555 2.07 LINK OP1 DT C 9 MG MG C1016 1555 1555 2.52 LINK MG MG C1016 O HOH C2005 1555 1555 2.08 LINK MG MG C1016 O HOH C2016 1555 1555 2.07 LINK MG MG C1016 O HOH C2017 1555 1555 2.07 LINK MG MG C1016 O HOH C2018 1555 1555 2.07 CISPEP 1 GLN A 159 PRO A 160 0 -0.06 CISPEP 2 GLN B 159 PRO B 160 0 0.50 SITE 1 AC1 6 GLU A 82 HIS A 89 HIS A 91 HOH A2110 SITE 2 AC1 6 HOH A2116 HOH A2117 SITE 1 AC2 5 HOH A2038 HOH A2039 HOH B2014 HOH B2042 SITE 2 AC2 5 HOH B2043 SITE 1 AC3 4 GLY A 84 SER A 85 GLU A 86 TYR A 87 SITE 1 AC4 6 GLU B 82 HIS B 89 HIS B 91 HOH B2096 SITE 2 AC4 6 HOH B2101 HOH B2102 SITE 1 AC5 5 DT C 9 HOH C2005 HOH C2016 HOH C2017 SITE 2 AC5 5 HOH C2018 CRYST1 41.830 78.705 184.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005426 0.00000 MTRIX1 1 -0.793800 -0.582400 0.175500 5.51130 1 MTRIX2 1 -0.608200 0.756300 -0.241200 15.76420 1 MTRIX3 1 0.007700 -0.298200 -0.954500 94.06500 1