data_1UUU # _entry.id 1UUU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UUU pdb_00001uuu 10.2210/pdb1uuu/pdb WWPDB D_1000176986 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UUU _pdbx_database_status.recvd_initial_deposition_date 1997-08-12 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sich, C.' 1 'Ohlenschlager, O.' 2 'Ramachandran, R.' 3 'Gorlach, M.' 4 'Brown, L.R.' 5 # _citation.id primary _citation.title ;Structure of an RNA hairpin loop with a 5'-CGUUUCG-3' loop motif by heteronuclear NMR spectroscopy and distance geometry. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 13989 _citation.page_last 14002 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9369470 _citation.pdbx_database_id_DOI 10.1021/bi971207g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sich, C.' 1 ? primary 'Ohlenschlager, O.' 2 ? primary 'Ramachandran, R.' 3 ? primary 'Gorlach, M.' 4 ? primary 'Brown, L.R.' 5 ? # _cell.entry_id 1UUU _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UUU _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*GP*GP*CP*GP*UP*AP*CP*GP*UP*UP*UP*CP*GP*UP*AP*CP*GP*CP*C)-3') ; _entity.formula_weight 6046.608 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name UUU19MER # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGUACGUUUCGUACGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGUACGUUUCGUACGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 A n 1 7 C n 1 8 G n 1 9 U n 1 10 U n 1 11 U n 1 12 C n 1 13 G n 1 14 U n 1 15 A n 1 16 C n 1 17 G n 1 18 C n 1 19 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1UUU _struct_ref.pdbx_db_accession 1UUU _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1UUU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1UUU _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 UNITY600 Varian 600 2 INOVA750 Varian 750 # _pdbx_nmr_refine.entry_id 1UUU _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1UUU _pdbx_nmr_ensemble.conformers_calculated_total_number 300 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST TARGET FUNCTION' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Amber 4.1 'PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN' 1 'structure solution' DIANA ? ? 2 # _exptl.entry_id 1UUU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1UUU _struct.title ;STRUCTURE OF AN RNA HAIRPIN LOOP WITH A 5'-CGUUUCG-3' LOOP MOTIF BY HETERONUCLEAR NMR SPECTROSCOPY AND DISTANCE GEOMETRY, 15 STRUCTURES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UUU _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBONUCLEIC ACID, RNA, PENTALOOP, HAIRPIN, 18S RIBOSOMAL RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 2 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 2 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 2 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 3 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 3 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 3 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 4 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 4 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 4 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 15 N1 ? ? A U 5 A A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 15 N6 ? ? A U 5 A A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 14 N3 ? ? A A 6 A U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 14 O4 ? ? A A 6 A U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 7 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 7 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 7 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 O6 ? ? ? 1_555 A G 13 N2 ? ? A G 8 A G 13 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1UUU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UUU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 U 10 10 10 U U A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 A 15 15 15 A A A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-02-25 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' # _software.name AMBER _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 O2 A U 10 ? ? "HO2'" A G 13 ? ? 1.51 2 12 O2 A U 10 ? ? "HO2'" A G 13 ? ? 1.50 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 116.28 119.90 -3.62 0.60 N 2 2 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.87 109.70 -4.83 0.70 N 3 2 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.25 108.50 5.75 0.70 N 4 2 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.18 108.50 4.68 0.70 N 5 2 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 114.89 108.50 6.39 0.70 N 6 2 N1 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 115.96 119.90 -3.94 0.60 N 7 3 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 103.38 109.70 -6.32 0.70 N 8 3 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 115.40 108.50 6.90 0.70 N 9 3 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.97 108.50 4.47 0.70 N 10 3 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.20 108.50 4.70 0.70 N 11 3 N1 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 116.16 119.90 -3.74 0.60 N 12 4 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 115.05 108.50 6.55 0.70 N 13 4 C5 A A 6 ? ? C6 A A 6 ? ? N1 A A 6 ? ? 120.78 117.70 3.08 0.50 N 14 4 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.78 108.50 5.28 0.70 N 15 5 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 113.65 108.50 5.15 0.70 N 16 5 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 114.84 118.60 -3.76 0.60 N 17 5 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.55 108.50 5.05 0.70 N 18 5 "C1'" A G 13 ? ? "O4'" A G 13 ? ? "C4'" A G 13 ? ? 104.50 109.70 -5.20 0.70 N 19 5 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 117.08 108.50 8.58 0.70 N 20 6 C5 A A 6 ? ? C6 A A 6 ? ? N1 A A 6 ? ? 120.78 117.70 3.08 0.50 N 21 6 "C5'" A U 10 ? ? "C4'" A U 10 ? ? "C3'" A U 10 ? ? 102.85 115.20 -12.35 1.40 N 22 6 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.96 108.50 4.46 0.70 N 23 6 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 112.88 108.50 4.38 0.70 N 24 6 N1 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 116.06 119.90 -3.84 0.60 N 25 7 N1 A G 1 ? ? C6 A G 1 ? ? O6 A G 1 ? ? 116.23 119.90 -3.67 0.60 N 26 7 "C1'" A G 13 ? ? "O4'" A G 13 ? ? "C4'" A G 13 ? ? 105.45 109.70 -4.25 0.70 N 27 7 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.42 108.50 4.92 0.70 N 28 8 C5 A A 6 ? ? C6 A A 6 ? ? N1 A A 6 ? ? 120.72 117.70 3.02 0.50 N 29 8 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.16 109.70 -5.54 0.70 N 30 8 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 114.21 108.50 5.71 0.70 N 31 8 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.78 108.50 4.28 0.70 N 32 8 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.56 108.50 5.06 0.70 N 33 9 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 114.81 118.60 -3.79 0.60 N 34 9 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.50 109.70 -5.20 0.70 N 35 9 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 115.52 108.50 7.02 0.70 N 36 9 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.82 108.50 4.32 0.70 N 37 10 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 117.27 108.50 8.77 0.70 N 38 10 C5 A A 6 ? ? C6 A A 6 ? ? N1 A A 6 ? ? 120.83 117.70 3.13 0.50 N 39 10 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.77 108.50 4.27 0.70 N 40 10 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.01 108.50 4.51 0.70 N 41 10 N1 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 116.27 119.90 -3.63 0.60 N 42 11 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.67 109.70 -5.03 0.70 N 43 11 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.93 108.50 6.43 0.70 N 44 11 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 114.26 108.50 5.76 0.70 N 45 11 "C3'" A U 9 ? ? "O3'" A U 9 ? ? P A U 10 ? ? 127.89 119.70 8.19 1.20 Y 46 11 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 114.34 108.50 5.84 0.70 N 47 11 N1 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 116.24 119.90 -3.66 0.60 N 48 12 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 114.81 119.90 -5.09 0.70 N 49 12 N1 A G 17 ? ? C6 A G 17 ? ? O6 A G 17 ? ? 116.10 119.90 -3.80 0.60 N 50 13 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.60 109.70 -5.10 0.70 N 51 13 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.51 108.50 6.01 0.70 N 52 13 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.46 108.50 4.96 0.70 N 53 13 "C3'" A U 9 ? ? "O3'" A U 9 ? ? P A U 10 ? ? 127.62 119.70 7.92 1.20 Y 54 13 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.82 108.50 5.32 0.70 N 55 14 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.71 108.50 5.21 0.70 N 56 15 N1 A G 1 ? ? C6 A G 1 ? ? O6 A G 1 ? ? 116.20 119.90 -3.70 0.60 N 57 15 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 104.63 109.70 -5.07 0.70 N 58 15 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 113.75 108.50 5.25 0.70 N 59 15 "C3'" A C 12 ? ? "O3'" A C 12 ? ? P A G 13 ? ? 127.93 119.70 8.23 1.20 Y 60 15 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.85 108.50 5.35 0.70 N 61 15 "O4'" A U 14 ? ? "C1'" A U 14 ? ? N1 A U 14 ? ? 113.65 108.50 5.15 0.70 N 62 15 "O4'" A A 15 ? ? "C1'" A A 15 ? ? N9 A A 15 ? ? 112.77 108.50 4.27 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 2 ? ? 0.059 'SIDE CHAIN' 2 1 G A 4 ? ? 0.114 'SIDE CHAIN' 3 1 G A 13 ? ? 0.087 'SIDE CHAIN' 4 1 A A 15 ? ? 0.059 'SIDE CHAIN' 5 1 G A 17 ? ? 0.103 'SIDE CHAIN' 6 2 G A 2 ? ? 0.090 'SIDE CHAIN' 7 2 G A 8 ? ? 0.060 'SIDE CHAIN' 8 2 G A 13 ? ? 0.104 'SIDE CHAIN' 9 2 A A 15 ? ? 0.060 'SIDE CHAIN' 10 2 G A 17 ? ? 0.098 'SIDE CHAIN' 11 3 G A 2 ? ? 0.075 'SIDE CHAIN' 12 3 U A 10 ? ? 0.152 'SIDE CHAIN' 13 3 C A 12 ? ? 0.074 'SIDE CHAIN' 14 3 G A 13 ? ? 0.076 'SIDE CHAIN' 15 3 U A 14 ? ? 0.080 'SIDE CHAIN' 16 3 A A 15 ? ? 0.059 'SIDE CHAIN' 17 3 G A 17 ? ? 0.100 'SIDE CHAIN' 18 4 G A 1 ? ? 0.092 'SIDE CHAIN' 19 4 G A 2 ? ? 0.066 'SIDE CHAIN' 20 4 G A 4 ? ? 0.067 'SIDE CHAIN' 21 4 G A 13 ? ? 0.118 'SIDE CHAIN' 22 4 A A 15 ? ? 0.078 'SIDE CHAIN' 23 4 G A 17 ? ? 0.125 'SIDE CHAIN' 24 5 G A 1 ? ? 0.056 'SIDE CHAIN' 25 5 G A 2 ? ? 0.071 'SIDE CHAIN' 26 5 A A 6 ? ? 0.064 'SIDE CHAIN' 27 5 G A 13 ? ? 0.078 'SIDE CHAIN' 28 5 G A 17 ? ? 0.122 'SIDE CHAIN' 29 6 G A 2 ? ? 0.080 'SIDE CHAIN' 30 6 G A 8 ? ? 0.057 'SIDE CHAIN' 31 6 C A 12 ? ? 0.083 'SIDE CHAIN' 32 6 G A 13 ? ? 0.133 'SIDE CHAIN' 33 6 A A 15 ? ? 0.068 'SIDE CHAIN' 34 6 G A 17 ? ? 0.103 'SIDE CHAIN' 35 7 G A 2 ? ? 0.048 'SIDE CHAIN' 36 7 G A 4 ? ? 0.073 'SIDE CHAIN' 37 7 U A 10 ? ? 0.092 'SIDE CHAIN' 38 7 C A 12 ? ? 0.089 'SIDE CHAIN' 39 7 G A 13 ? ? 0.073 'SIDE CHAIN' 40 7 A A 15 ? ? 0.071 'SIDE CHAIN' 41 7 G A 17 ? ? 0.116 'SIDE CHAIN' 42 8 G A 2 ? ? 0.073 'SIDE CHAIN' 43 8 G A 4 ? ? 0.083 'SIDE CHAIN' 44 8 G A 8 ? ? 0.065 'SIDE CHAIN' 45 8 C A 12 ? ? 0.085 'SIDE CHAIN' 46 8 G A 13 ? ? 0.125 'SIDE CHAIN' 47 8 A A 15 ? ? 0.064 'SIDE CHAIN' 48 8 G A 17 ? ? 0.095 'SIDE CHAIN' 49 9 G A 4 ? ? 0.085 'SIDE CHAIN' 50 9 A A 6 ? ? 0.065 'SIDE CHAIN' 51 9 G A 13 ? ? 0.104 'SIDE CHAIN' 52 9 A A 15 ? ? 0.064 'SIDE CHAIN' 53 9 G A 17 ? ? 0.093 'SIDE CHAIN' 54 10 G A 1 ? ? 0.094 'SIDE CHAIN' 55 10 G A 2 ? ? 0.060 'SIDE CHAIN' 56 10 G A 4 ? ? 0.104 'SIDE CHAIN' 57 10 C A 12 ? ? 0.085 'SIDE CHAIN' 58 10 G A 13 ? ? 0.157 'SIDE CHAIN' 59 10 U A 14 ? ? 0.071 'SIDE CHAIN' 60 10 A A 15 ? ? 0.083 'SIDE CHAIN' 61 10 G A 17 ? ? 0.094 'SIDE CHAIN' 62 11 G A 2 ? ? 0.078 'SIDE CHAIN' 63 11 G A 4 ? ? 0.063 'SIDE CHAIN' 64 11 G A 13 ? ? 0.101 'SIDE CHAIN' 65 11 A A 15 ? ? 0.062 'SIDE CHAIN' 66 11 G A 17 ? ? 0.107 'SIDE CHAIN' 67 11 C A 19 ? ? 0.069 'SIDE CHAIN' 68 12 G A 1 ? ? 0.057 'SIDE CHAIN' 69 12 G A 4 ? ? 0.064 'SIDE CHAIN' 70 12 G A 8 ? ? 0.068 'SIDE CHAIN' 71 12 U A 10 ? ? 0.170 'SIDE CHAIN' 72 12 A A 15 ? ? 0.106 'SIDE CHAIN' 73 12 C A 16 ? ? 0.091 'SIDE CHAIN' 74 12 G A 17 ? ? 0.072 'SIDE CHAIN' 75 13 G A 2 ? ? 0.070 'SIDE CHAIN' 76 13 G A 4 ? ? 0.078 'SIDE CHAIN' 77 13 G A 8 ? ? 0.055 'SIDE CHAIN' 78 13 G A 13 ? ? 0.108 'SIDE CHAIN' 79 13 A A 15 ? ? 0.062 'SIDE CHAIN' 80 13 G A 17 ? ? 0.108 'SIDE CHAIN' 81 14 G A 4 ? ? 0.071 'SIDE CHAIN' 82 14 G A 8 ? ? 0.168 'SIDE CHAIN' 83 14 C A 12 ? ? 0.103 'SIDE CHAIN' 84 14 A A 15 ? ? 0.064 'SIDE CHAIN' 85 14 G A 17 ? ? 0.103 'SIDE CHAIN' 86 15 U A 10 ? ? 0.081 'SIDE CHAIN' 87 15 C A 12 ? ? 0.082 'SIDE CHAIN' 88 15 A A 15 ? ? 0.060 'SIDE CHAIN' 89 15 G A 17 ? ? 0.118 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1UUU 'double helix' 1UUU 'a-form double helix' 1UUU 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 18 1_555 -0.313 -0.185 -0.053 -5.679 -6.491 -0.524 1 A_G2:C18_A A 2 ? A 18 ? 19 1 1 A C 3 1_555 A G 17 1_555 0.356 -0.211 0.097 0.229 -13.245 0.080 2 A_C3:G17_A A 3 ? A 17 ? 19 1 1 A G 4 1_555 A C 16 1_555 -0.385 -0.209 0.259 -0.471 -22.692 2.290 3 A_G4:C16_A A 4 ? A 16 ? 19 1 1 A U 5 1_555 A A 15 1_555 -0.129 -0.079 0.299 -1.929 -21.895 -6.978 4 A_U5:A15_A A 5 ? A 15 ? 20 1 1 A A 6 1_555 A U 14 1_555 0.169 -0.138 0.678 10.299 -10.762 -4.027 5 A_A6:U14_A A 6 ? A 14 ? 20 1 1 A C 7 1_555 A G 13 1_555 -0.004 -0.083 0.012 18.816 -15.736 1.191 6 A_C7:G13_A A 7 ? A 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 18 1_555 A C 3 1_555 A G 17 1_555 0.260 -1.044 3.027 0.623 9.248 34.256 -2.917 -0.346 2.669 15.354 -1.035 35.452 1 AA_G2C3:G17C18_AA A 2 ? A 18 ? A 3 ? A 17 ? 1 A C 3 1_555 A G 17 1_555 A G 4 1_555 A C 16 1_555 0.196 -1.153 3.015 0.332 15.307 29.882 -4.127 -0.294 2.185 27.528 -0.598 33.497 2 AA_C3G4:C16G17_AA A 3 ? A 17 ? A 4 ? A 16 ? 1 A G 4 1_555 A C 16 1_555 A U 5 1_555 A A 15 1_555 -0.972 -1.067 3.132 -5.032 2.504 36.124 -2.036 0.879 3.156 4.009 8.054 36.544 3 AA_G4U5:A15C16_AA A 4 ? A 16 ? A 5 ? A 15 ? 1 A U 5 1_555 A A 15 1_555 A A 6 1_555 A U 14 1_555 -0.171 -1.469 2.664 -3.503 15.025 28.056 -4.607 -0.141 1.688 28.435 6.629 31.944 4 AA_U5A6:U14A15_AA A 5 ? A 15 ? A 6 ? A 14 ? 1 A A 6 1_555 A U 14 1_555 A C 7 1_555 A G 13 1_555 1.270 -0.694 2.984 9.671 -1.233 38.502 -0.884 -0.784 3.218 -1.834 -14.387 39.672 5 AA_A6C7:G13U14_AA A 6 ? A 14 ? A 7 ? A 13 ? #