HEADER HYDROLASE 14-JAN-04 1UV4 TITLE NATIVE BACILLUS SUBTILIS ARABINANASE ARB43A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINAN-ENDO 1,5-ALPHA-L-ARABINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARABINASE; COMPND 5 EC: 3.2.1.99; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 ATCC: 23857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TUNER DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 22B KEYWDS HYDROLASE, PROPELLER, CATALYSIS EXPDTA X-RAY DIFFRACTION AUTHOR D.NURIZZO,E.J.TAYLOR,H.J.GILBERT,G.J.DAVIES REVDAT 5 13-DEC-23 1UV4 1 REMARK LINK REVDAT 4 13-JUL-11 1UV4 1 VERSN REVDAT 3 24-FEB-09 1UV4 1 VERSN REVDAT 2 02-MAR-05 1UV4 1 JRNL REVDAT 1 16-FEB-05 1UV4 0 JRNL AUTH M.PROCTOR,E.J.TAYLOR,D.NURIZZO,J.TURKENBURG,R.LLOYD, JRNL AUTH 2 M.VARDAKOU,G.J.DAVIES,H.J.GILBERT JRNL TITL TAILORED CATALYSTS FOR PLANT CELL-WALL DEGRADATION: JRNL TITL 2 REDESIGNING THE EXO/ENDO PREFERENCE OF CELLVIBRIO JAPONICUS JRNL TITL 3 ARABINANASE 43A JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 2697 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15708971 JRNL DOI 10.1073/PNAS.0500051102 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 34795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2345 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1961 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3184 ; 1.668 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4594 ; 1.388 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 7.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2636 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 481 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 380 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2274 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1301 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 189 ; 0.347 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.101 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.109 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1435 ; 0.860 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2294 ; 1.401 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 910 ; 2.246 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 890 ; 3.267 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3118 9.3230 48.5592 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.0850 REMARK 3 T33: 0.1269 T12: -0.0184 REMARK 3 T13: -0.0173 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 15.1277 L22: 2.7664 REMARK 3 L33: 1.5048 L12: -2.9629 REMARK 3 L13: -1.4996 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.3230 S13: -0.9042 REMARK 3 S21: -0.0880 S22: -0.0389 S23: 0.4517 REMARK 3 S31: 0.0200 S32: -0.0454 S33: -0.0274 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8716 11.8084 38.3782 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0273 REMARK 3 T33: 0.0292 T12: 0.0131 REMARK 3 T13: -0.0036 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.9197 L22: 2.0328 REMARK 3 L33: 1.5353 L12: 0.6354 REMARK 3 L13: -0.8445 L23: 0.0487 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: -0.0151 S13: -0.2786 REMARK 3 S21: -0.0400 S22: -0.0228 S23: 0.0172 REMARK 3 S31: 0.1685 S32: -0.0231 S33: 0.0575 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2033 22.7317 34.9749 REMARK 3 T TENSOR REMARK 3 T11: 0.0319 T22: 0.0339 REMARK 3 T33: 0.0210 T12: 0.0074 REMARK 3 T13: 0.0241 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.5837 L22: 2.6742 REMARK 3 L33: 2.3232 L12: 0.0338 REMARK 3 L13: 0.4075 L23: 0.1521 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: 0.1506 S13: -0.0529 REMARK 3 S21: -0.2097 S22: 0.0336 S23: -0.0470 REMARK 3 S31: 0.0875 S32: 0.1200 S33: -0.0584 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3039 33.8143 38.8191 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0324 REMARK 3 T33: 0.0332 T12: 0.0015 REMARK 3 T13: 0.0097 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6812 L22: 1.3937 REMARK 3 L33: 2.8370 L12: 0.2062 REMARK 3 L13: 0.5126 L23: 0.2815 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.0117 S13: 0.1153 REMARK 3 S21: -0.0691 S22: 0.0379 S23: 0.0158 REMARK 3 S31: -0.2051 S32: -0.0576 S33: -0.0195 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3538 30.7828 50.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.0705 REMARK 3 T33: 0.0391 T12: -0.0022 REMARK 3 T13: 0.0126 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.6681 L22: 2.9524 REMARK 3 L33: 1.3198 L12: -0.8186 REMARK 3 L13: -0.4410 L23: -0.7932 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.1716 S13: 0.0141 REMARK 3 S21: 0.1495 S22: 0.0632 S23: 0.0455 REMARK 3 S31: -0.0939 S32: -0.0378 S33: -0.0582 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3836 18.2683 49.2177 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.0854 REMARK 3 T33: 0.0608 T12: -0.0055 REMARK 3 T13: -0.0025 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.0094 L22: 3.3143 REMARK 3 L33: 1.1505 L12: -1.4672 REMARK 3 L13: -0.0257 L23: -0.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.1425 S12: 0.1460 S13: -0.1405 REMARK 3 S21: -0.1380 S22: -0.0868 S23: 0.3192 REMARK 3 S31: -0.0169 S32: -0.0872 S33: -0.0557 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 502 A 502 REMARK 3 RESIDUE RANGE : A 1294 A 1294 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8890 23.1138 41.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0329 REMARK 3 T33: 0.0673 T12: -0.0022 REMARK 3 T13: 0.0368 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 36.0157 L22: 2.3289 REMARK 3 L33: 61.8675 L12: 0.6915 REMARK 3 L13: 36.4174 L23: -1.9259 REMARK 3 S TENSOR REMARK 3 S11: 0.3819 S12: -0.1730 S13: 0.3611 REMARK 3 S21: -0.0049 S22: -0.1549 S23: -0.0629 REMARK 3 S31: 0.0544 S32: 0.1858 S33: -0.2270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1290014382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40400 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 15% PEG 3350 5MM CACL2, 10 REMARK 280 MM TRIS PH 8.0, 25% ETHYLENE GLYCOL, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.07650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 46 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 68 O HOH A 2091 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 49 CA - CB - CG2 ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 45 24.41 48.68 REMARK 500 LYS A 46 -46.76 -132.98 REMARK 500 SER A 108 116.89 -160.06 REMARK 500 SER A 150 118.97 -169.01 REMARK 500 PHE A 151 -171.28 62.91 REMARK 500 TRP A 152 -132.42 54.13 REMARK 500 ALA A 186 60.48 64.51 REMARK 500 TYR A 213 -46.72 -137.55 REMARK 500 ASN A 247 -158.06 -152.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2113 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1294 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 77 OD1 REMARK 620 2 GLU A 135 OE1 76.7 REMARK 620 3 ASP A 257 OD1 105.4 87.7 REMARK 620 4 ASP A 257 OD2 89.2 130.1 50.0 REMARK 620 5 HOH A2111 O 82.8 78.5 162.0 147.5 REMARK 620 6 HOH A2161 O 156.7 81.1 80.3 110.7 86.1 REMARK 620 7 HOH A2299 O 136.0 142.7 96.7 76.5 87.6 63.4 REMARK 620 8 HOH A2300 O 85.9 153.2 116.8 68.8 79.3 112.0 50.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2008 O REMARK 620 2 HOH A2014 O 93.0 REMARK 620 3 HOH A2108 O 77.8 73.4 REMARK 620 4 HOH A2110 O 150.3 80.7 72.6 REMARK 620 5 HOH A2160 O 83.1 142.6 69.4 84.7 REMARK 620 6 HOH A2203 O 144.8 92.7 136.9 64.8 111.7 REMARK 620 7 HOH A2204 O 85.6 144.7 139.7 116.1 72.3 70.1 REMARK 620 8 HOH A2275 O 81.2 70.3 136.7 122.5 144.2 68.1 74.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1297 DBREF 1UV4 A 1 277 UNP P94522 P94522_BACSU 31 307 DBREF 1UV4 A 278 293 PDB 1UV4 1UV4 278 293 SEQRES 1 A 293 GLU ALA ALA PHE TRP GLY ALA SER ASN GLU LEU LEU HIS SEQRES 2 A 293 ASP PRO THR MET ILE LYS GLU GLY SER SER TRP TYR ALA SEQRES 3 A 293 LEU GLY THR GLY LEU THR GLU GLU ARG GLY LEU ARG VAL SEQRES 4 A 293 LEU LYS SER SER ASP ALA LYS ASN TRP THR VAL GLN LYS SEQRES 5 A 293 SER ILE PHE THR THR PRO LEU SER TRP TRP SER ASN TYR SEQRES 6 A 293 VAL PRO ASN TYR GLY GLN ASN GLN TRP ALA PRO ASP ILE SEQRES 7 A 293 GLN TYR TYR ASN GLY LYS TYR TRP LEU TYR TYR SER VAL SEQRES 8 A 293 SER SER PHE GLY SER ASN THR SER ALA ILE GLY LEU ALA SEQRES 9 A 293 SER SER THR SER ILE SER SER GLY GLY TRP LYS ASP GLU SEQRES 10 A 293 GLY LEU VAL ILE ARG SER THR SER SER ASN ASN TYR ASN SEQRES 11 A 293 ALA ILE ASP PRO GLU LEU THR PHE ASP LYS ASP GLY ASN SEQRES 12 A 293 PRO TRP LEU ALA PHE GLY SER PHE TRP SER GLY ILE LYS SEQRES 13 A 293 LEU THR LYS LEU ASP LYS SER THR MET LYS PRO THR GLY SEQRES 14 A 293 SER LEU TYR SER ILE ALA ALA ARG PRO ASN ASN GLY GLY SEQRES 15 A 293 ALA LEU GLU ALA PRO THR LEU THR TYR GLN ASN GLY TYR SEQRES 16 A 293 TYR TYR LEU MET VAL SER PHE ASP LYS CYS CYS ASP GLY SEQRES 17 A 293 VAL ASN SER THR TYR LYS ILE ALA TYR GLY ARG SER LYS SEQRES 18 A 293 SER ILE THR GLY PRO TYR LEU ASP LYS SER GLY LYS SER SEQRES 19 A 293 MET LEU GLU GLY GLY GLY THR ILE LEU ASP SER GLY ASN SEQRES 20 A 293 ASP GLN TRP LYS GLY PRO GLY GLY GLN ASP ILE VAL ASN SEQRES 21 A 293 GLY ASN ILE LEU VAL ARG HIS ALA TYR ASP ALA ASN ASP SEQRES 22 A 293 ASN GLY ILE PRO LYS LEU LEU ILE ASN ASP LEU ASN TRP SEQRES 23 A 293 SER SER GLY TRP PRO SER TYR HET CA A 502 1 HET EDO A 604 4 HET CA A1294 1 HET EDO A1295 4 HET EDO A1296 4 HET EDO A1297 8 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 2(CA 2+) FORMUL 3 EDO 4(C2 H6 O2) FORMUL 8 HOH *302(H2 O) HELIX 1 1 LEU A 59 TYR A 65 5 7 HELIX 2 2 MET A 235 GLY A 238 5 4 SHEET 1 AA 4 PHE A 4 LEU A 11 0 SHEET 2 AA 4 PRO A 277 ASP A 283 -1 O LEU A 279 N SER A 8 SHEET 3 AA 4 ILE A 263 ASP A 270 -1 O LEU A 264 N ASN A 282 SHEET 4 AA 4 TRP A 250 VAL A 259 -1 O LYS A 251 N TYR A 269 SHEET 1 AB 4 THR A 16 GLU A 20 0 SHEET 2 AB 4 SER A 23 THR A 29 -1 O SER A 23 N GLU A 20 SHEET 3 AB 4 LEU A 37 SER A 42 -1 O ARG A 38 N GLY A 28 SHEET 4 AB 4 THR A 49 ILE A 54 -1 O THR A 49 N LYS A 41 SHEET 1 AC 4 TRP A 74 TYR A 81 0 SHEET 2 AC 4 LYS A 84 VAL A 91 -1 O LYS A 84 N TYR A 81 SHEET 3 AC 4 SER A 99 SER A 106 -1 O ALA A 100 N VAL A 91 SHEET 4 AC 4 LYS A 115 SER A 123 -1 O LYS A 115 N SER A 105 SHEET 1 AD 4 GLU A 135 PHE A 138 0 SHEET 2 AD 4 PRO A 144 PHE A 148 -1 O TRP A 145 N THR A 137 SHEET 3 AD 4 ILE A 155 LEU A 160 -1 O LYS A 156 N PHE A 148 SHEET 4 AD 4 PRO A 167 ALA A 175 -1 O THR A 168 N LYS A 159 SHEET 1 AE 4 LEU A 184 GLN A 192 0 SHEET 2 AE 4 TYR A 195 ASP A 203 -1 O TYR A 195 N GLN A 192 SHEET 3 AE 4 THR A 212 SER A 220 -1 N TYR A 213 O PHE A 202 SHEET 4 AE 4 THR A 241 ASP A 244 -1 O THR A 241 N TYR A 217 SSBOND 1 CYS A 205 CYS A 206 1555 1555 2.03 LINK OD1 ASP A 77 CA CA A1294 1555 1555 2.29 LINK OE1 GLU A 135 CA CA A1294 1555 1555 2.43 LINK OD1 ASP A 257 CA CA A1294 1555 1555 2.32 LINK OD2 ASP A 257 CA CA A1294 1555 1555 2.63 LINK CA CA A 502 O HOH A2008 1555 1555 2.45 LINK CA CA A 502 O HOH A2014 1555 1555 2.35 LINK CA CA A 502 O HOH A2108 1555 1555 2.60 LINK CA CA A 502 O HOH A2110 1555 1555 2.45 LINK CA CA A 502 O HOH A2160 1555 1555 2.30 LINK CA CA A 502 O HOH A2203 1555 1555 2.65 LINK CA CA A 502 O HOH A2204 1555 1555 2.53 LINK CA CA A 502 O HOH A2275 1555 1555 2.51 LINK CA CA A1294 O HOH A2111 1555 1555 2.44 LINK CA CA A1294 O HOH A2161 1555 1555 2.34 LINK CA CA A1294 O HOH A2299 1555 1555 2.74 LINK CA CA A1294 O HOH A2300 1555 1555 2.32 CISPEP 1 GLY A 225 PRO A 226 0 6.22 SITE 1 AC1 8 HOH A2008 HOH A2014 HOH A2108 HOH A2110 SITE 2 AC1 8 HOH A2160 HOH A2203 HOH A2204 HOH A2275 SITE 1 AC2 7 ASP A 77 GLU A 135 ASP A 257 HOH A2111 SITE 2 AC2 7 HOH A2161 HOH A2299 HOH A2300 SITE 1 AC3 3 HOH A2296 HOH A2297 HOH A2298 SITE 1 AC4 5 ASP A 244 GLY A 246 ASN A 247 TRP A 250 SITE 2 AC4 5 ARG A 266 SITE 1 AC5 3 LYS A 156 LEU A 171 SER A 173 SITE 1 AC6 10 MET A 17 ILE A 18 ILE A 78 GLN A 79 SITE 2 AC6 10 VAL A 259 ASN A 260 HOH A2299 HOH A2300 SITE 3 AC6 10 HOH A2301 HOH A2302 CRYST1 48.628 46.153 57.322 90.00 98.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020564 0.000000 0.003242 0.00000 SCALE2 0.000000 0.021667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017661 0.00000