data_1UX0 # _entry.id 1UX0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1UX0 PDBE EBI-14590 WWPDB D_1290014590 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1JTK unspecified 'CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM BACILLUS SUBTILIS IN COMPLEX WITH THE INHIBITOR TETRAHYDRODEOXYURIDINE' PDB 1UWZ unspecified 'CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM BACILLUS SUBTILIS R56A MUTANT ENZYME' PDB 1UX1 unspecified 'CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM BACILLUS SUBTILIS C53H AND R56A MUTANT ENZYME' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UX0 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-02-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Johansson, E.' 1 'Neuhard, J.' 2 'Willemoes, M.' 3 'Larsen, S.' 4 # _citation.id primary _citation.title 'Structural, Kinetic, and Mutational Studies of the Zinc Ion Environment in Tetrameric Cytidine Deaminase' _citation.journal_abbrev Biochemistry _citation.journal_volume 43 _citation.page_first 6020 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15147186 _citation.pdbx_database_id_DOI 10.1021/BI035893X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Johansson, E.' 1 ? primary 'Neuhard, J.' 2 ? primary 'Willemoes, M.' 3 ? primary 'Larsen, S.' 4 ? # _cell.entry_id 1UX0 _cell.length_a 74.880 _cell.length_b 66.098 _cell.length_c 55.514 _cell.angle_alpha 90.00 _cell.angle_beta 115.64 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UX0 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CYTIDINE DEAMINASE' 14839.948 2 3.5.4.5 YES ? ? 2 non-polymer syn TETRAHYDRODEOXYURIDINE 230.218 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 145 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CYTIDINE AMINOHYDROLASE, CDA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEQTALFKAVSEGDTEFQMLAVAADTP GPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDLHDERKL ; _entity_poly.pdbx_seq_one_letter_code_can ;MNRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEQTALFKAVSEGDTEFQMLAVAADTP GPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDLHDERKL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ARG n 1 4 GLN n 1 5 GLU n 1 6 LEU n 1 7 ILE n 1 8 THR n 1 9 GLU n 1 10 ALA n 1 11 LEU n 1 12 LYS n 1 13 ALA n 1 14 ARG n 1 15 ASP n 1 16 MET n 1 17 ALA n 1 18 TYR n 1 19 ALA n 1 20 PRO n 1 21 TYR n 1 22 SER n 1 23 LYS n 1 24 PHE n 1 25 GLN n 1 26 VAL n 1 27 GLY n 1 28 ALA n 1 29 ALA n 1 30 LEU n 1 31 LEU n 1 32 THR n 1 33 LYS n 1 34 ASP n 1 35 GLY n 1 36 LYS n 1 37 VAL n 1 38 TYR n 1 39 ARG n 1 40 GLY n 1 41 CYS n 1 42 ASN n 1 43 ILE n 1 44 GLU n 1 45 ASN n 1 46 ALA n 1 47 ALA n 1 48 TYR n 1 49 SER n 1 50 MET n 1 51 CYS n 1 52 ASN n 1 53 CYS n 1 54 ALA n 1 55 GLU n 1 56 GLN n 1 57 THR n 1 58 ALA n 1 59 LEU n 1 60 PHE n 1 61 LYS n 1 62 ALA n 1 63 VAL n 1 64 SER n 1 65 GLU n 1 66 GLY n 1 67 ASP n 1 68 THR n 1 69 GLU n 1 70 PHE n 1 71 GLN n 1 72 MET n 1 73 LEU n 1 74 ALA n 1 75 VAL n 1 76 ALA n 1 77 ALA n 1 78 ASP n 1 79 THR n 1 80 PRO n 1 81 GLY n 1 82 PRO n 1 83 VAL n 1 84 SER n 1 85 PRO n 1 86 CYS n 1 87 GLY n 1 88 ALA n 1 89 CYS n 1 90 ARG n 1 91 GLN n 1 92 VAL n 1 93 ILE n 1 94 SER n 1 95 GLU n 1 96 LEU n 1 97 CYS n 1 98 THR n 1 99 LYS n 1 100 ASP n 1 101 VAL n 1 102 ILE n 1 103 VAL n 1 104 VAL n 1 105 LEU n 1 106 THR n 1 107 ASN n 1 108 LEU n 1 109 GLN n 1 110 GLY n 1 111 GLN n 1 112 ILE n 1 113 LYS n 1 114 GLU n 1 115 MET n 1 116 THR n 1 117 VAL n 1 118 GLU n 1 119 GLU n 1 120 LEU n 1 121 LEU n 1 122 PRO n 1 123 GLY n 1 124 ALA n 1 125 PHE n 1 126 SER n 1 127 SER n 1 128 GLU n 1 129 ASP n 1 130 LEU n 1 131 HIS n 1 132 ASP n 1 133 GLU n 1 134 ARG n 1 135 LYS n 1 136 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BACILLUS SUBTILIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JF611 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTRCR56QCDA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CDD_BACSU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P19079 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UX0 A 1 ? 136 ? P19079 1 ? 136 ? 1 136 2 1 1UX0 B 1 ? 136 ? P19079 1 ? 136 ? 1 136 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1UX0 GLN A 56 ? UNP P19079 ARG 56 'engineered mutation' 56 1 2 1UX0 GLN B 56 ? UNP P19079 ARG 56 'engineered mutation' 56 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 THU non-polymer . TETRAHYDRODEOXYURIDINE ? 'C9 H14 N2 O5' 230.218 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1UX0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.1 _exptl_crystal.density_percent_sol 41 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;VAPOUR DIFFUSION AT RT: PROTEIN: 4.6 MG/ML + 5 MM TETRAHYDRODEOXYURIDINE PRECIPITANT: 17-23 % MPD, 10 MM CALCIUM CHLORIDE 0.1 M SODIUM ACETATE, pH 4.60 ; # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-11-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.968 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I711' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I711 _diffrn_source.pdbx_wavelength 0.968 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UX0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.990 _reflns.number_obs 16761 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.10600 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.9000 _reflns.B_iso_Wilson_estimate 15.7 _reflns.pdbx_redundancy 6.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.99 _reflns_shell.d_res_low 2.04 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.35100 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.200 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UX0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16757 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1404991.24 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.95 _refine.ls_d_res_high 1.99 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.207 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 777 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.0 _refine.aniso_B[1][1] -5.24 _refine.aniso_B[2][2] 5.35 _refine.aniso_B[3][3] -0.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 1.08 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.335711 _refine.solvent_model_param_bsol 44.6491 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1JTK' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1UX0 _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1952 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 2131 _refine_hist.d_res_high 1.99 _refine_hist.d_res_low 19.95 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.73 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.15 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.62 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.92 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.67 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.99 _refine_ls_shell.d_res_low 2.11 _refine_ls_shell.number_reflns_R_work 2647 _refine_ls_shell.R_factor_R_work 0.192 _refine_ls_shell.percent_reflns_obs 98.4 _refine_ls_shell.R_factor_R_free 0.202 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 3.1 _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 3 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 THU_PAR THU_TOP # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.999936 _struct_ncs_oper.matrix[1][2] 0.001283 _struct_ncs_oper.matrix[1][3] -0.011201 _struct_ncs_oper.matrix[2][1] -0.001334 _struct_ncs_oper.matrix[2][2] -0.999989 _struct_ncs_oper.matrix[2][3] 0.004566 _struct_ncs_oper.matrix[3][1] -0.011195 _struct_ncs_oper.matrix[3][2] 0.004580 _struct_ncs_oper.matrix[3][3] 0.999927 _struct_ncs_oper.vector[1] 26.39634 _struct_ncs_oper.vector[2] 117.58556 _struct_ncs_oper.vector[3] -0.16090 # _struct.entry_id 1UX0 _struct.title 'Bacillus subtilis cytidine deaminase with an Arg56 - Gln substitution' _struct.pdbx_descriptor 'CYTIDINE DEAMINASE (E.C.3.5.4.5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UX0 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'CYTIDINE DEAMINASE, CDD, TETRAMER, ZINC BINDING, PYRIMIDINE METABOLISM, SALVAGE, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? ASP A 15 ? ASN A 2 ASP A 15 1 ? 14 HELX_P HELX_P2 2 ALA A 47 ? CYS A 51 ? ALA A 47 CYS A 51 5 ? 5 HELX_P HELX_P3 3 CYS A 53 ? GLU A 65 ? CYS A 53 GLU A 65 1 ? 13 HELX_P HELX_P4 4 CYS A 86 ? CYS A 97 ? CYS A 86 CYS A 97 1 ? 12 HELX_P HELX_P5 5 VAL A 117 ? LEU A 121 ? VAL A 117 LEU A 121 1 ? 5 HELX_P HELX_P6 6 SER A 126 ? LEU A 130 ? SER A 126 LEU A 130 5 ? 5 HELX_P HELX_P7 7 ASN B 2 ? ASP B 15 ? ASN B 2 ASP B 15 1 ? 14 HELX_P HELX_P8 8 ALA B 47 ? CYS B 51 ? ALA B 47 CYS B 51 5 ? 5 HELX_P HELX_P9 9 CYS B 53 ? GLU B 65 ? CYS B 53 GLU B 65 1 ? 13 HELX_P HELX_P10 10 CYS B 86 ? CYS B 97 ? CYS B 86 CYS B 97 1 ? 12 HELX_P HELX_P11 11 VAL B 117 ? LEU B 121 ? VAL B 117 LEU B 121 1 ? 5 HELX_P HELX_P12 12 SER B 126 ? LEU B 130 ? SER B 126 LEU B 130 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 53 SG ? ? A ZN 1131 A CYS 53 1_555 ? ? ? ? ? ? ? 2.437 ? metalc2 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 86 SG ? ? A ZN 1131 A CYS 86 1_555 ? ? ? ? ? ? ? 2.341 ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 C THU . O4 ? ? A ZN 1131 A THU 138 1_555 ? ? ? ? ? ? ? 2.378 ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 89 SG ? ? A ZN 1131 A CYS 89 1_555 ? ? ? ? ? ? ? 2.472 ? metalc5 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 53 SG ? ? B ZN 1131 B CYS 53 1_555 ? ? ? ? ? ? ? 2.427 ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 E THU . O4 ? ? B ZN 1131 B THU 138 1_555 ? ? ? ? ? ? ? 2.437 ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 86 SG ? ? B ZN 1131 B CYS 86 1_555 ? ? ? ? ? ? ? 2.329 ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 89 SG ? ? B ZN 1131 B CYS 89 1_555 ? ? ? ? ? ? ? 2.484 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? parallel BA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 37 ? CYS A 41 ? VAL A 37 CYS A 41 AA 2 VAL A 26 ? THR A 32 ? VAL A 26 THR A 32 AA 3 PHE A 70 ? ALA A 77 ? PHE A 70 ALA A 77 AA 4 ILE A 102 ? THR A 106 ? ILE A 102 THR A 106 AA 5 ILE A 112 ? THR A 116 ? ILE A 112 THR A 116 BA 1 VAL B 37 ? CYS B 41 ? VAL B 37 CYS B 41 BA 2 VAL B 26 ? THR B 32 ? VAL B 26 THR B 32 BA 3 PHE B 70 ? ALA B 77 ? PHE B 70 ALA B 77 BA 4 ILE B 102 ? THR B 106 ? ILE B 102 THR B 106 BA 5 ILE B 112 ? THR B 116 ? ILE B 112 THR B 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 40 ? N GLY A 40 O ALA A 28 ? O ALA A 28 AA 2 3 O LEU A 31 ? O LEU A 31 N GLN A 71 ? N GLN A 71 AA 3 4 N LEU A 73 ? N LEU A 73 O ILE A 102 ? O ILE A 102 AA 4 5 N LEU A 105 ? N LEU A 105 O LYS A 113 ? O LYS A 113 BA 1 2 N GLY B 40 ? N GLY B 40 O ALA B 28 ? O ALA B 28 BA 2 3 O LEU B 31 ? O LEU B 31 N GLN B 71 ? N GLN B 71 BA 3 4 N LEU B 73 ? N LEU B 73 O ILE B 102 ? O ILE B 102 BA 4 5 N LEU B 105 ? N LEU B 105 O LYS B 113 ? O LYS B 113 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1131' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B1131' AC3 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE THU A 138' AC4 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE THU B 138' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 53 ? CYS A 53 . ? 1_555 ? 2 AC1 4 CYS A 86 ? CYS A 86 . ? 1_555 ? 3 AC1 4 CYS A 89 ? CYS A 89 . ? 1_555 ? 4 AC1 4 THU C . ? THU A 138 . ? 1_555 ? 5 AC2 4 CYS B 53 ? CYS B 53 . ? 1_555 ? 6 AC2 4 CYS B 86 ? CYS B 86 . ? 1_555 ? 7 AC2 4 CYS B 89 ? CYS B 89 . ? 1_555 ? 8 AC2 4 THU E . ? THU B 138 . ? 1_555 ? 9 AC3 14 PHE A 24 ? PHE A 24 . ? 1_555 ? 10 AC3 14 VAL A 26 ? VAL A 26 . ? 1_555 ? 11 AC3 14 ASN A 42 ? ASN A 42 . ? 1_555 ? 12 AC3 14 GLU A 44 ? GLU A 44 . ? 1_555 ? 13 AC3 14 CYS A 53 ? CYS A 53 . ? 1_555 ? 14 AC3 14 ALA A 54 ? ALA A 54 . ? 1_555 ? 15 AC3 14 GLU A 55 ? GLU A 55 . ? 1_555 ? 16 AC3 14 PRO A 85 ? PRO A 85 . ? 1_555 ? 17 AC3 14 CYS A 86 ? CYS A 86 . ? 1_555 ? 18 AC3 14 CYS A 89 ? CYS A 89 . ? 1_555 ? 19 AC3 14 ZN D . ? ZN A 1131 . ? 1_555 ? 20 AC3 14 ALA B 46 ? ALA B 46 . ? 1_555 ? 21 AC3 14 ALA B 47 ? ALA B 47 . ? 1_555 ? 22 AC3 14 TYR B 48 ? TYR B 48 . ? 1_555 ? 23 AC4 14 ALA A 46 ? ALA A 46 . ? 1_555 ? 24 AC4 14 ALA A 47 ? ALA A 47 . ? 1_555 ? 25 AC4 14 TYR A 48 ? TYR A 48 . ? 1_555 ? 26 AC4 14 PHE B 24 ? PHE B 24 . ? 1_555 ? 27 AC4 14 VAL B 26 ? VAL B 26 . ? 1_555 ? 28 AC4 14 ASN B 42 ? ASN B 42 . ? 1_555 ? 29 AC4 14 GLU B 44 ? GLU B 44 . ? 1_555 ? 30 AC4 14 CYS B 53 ? CYS B 53 . ? 1_555 ? 31 AC4 14 ALA B 54 ? ALA B 54 . ? 1_555 ? 32 AC4 14 GLU B 55 ? GLU B 55 . ? 1_555 ? 33 AC4 14 PRO B 85 ? PRO B 85 . ? 1_555 ? 34 AC4 14 CYS B 86 ? CYS B 86 . ? 1_555 ? 35 AC4 14 CYS B 89 ? CYS B 89 . ? 1_555 ? 36 AC4 14 ZN F . ? ZN B 1131 . ? 1_555 ? # _database_PDB_matrix.entry_id 1UX0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1UX0 _atom_sites.fract_transf_matrix[1][1] 0.013355 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006410 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015129 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019981 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 MET 50 50 50 MET MET A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 MET 115 115 115 MET MET A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 HIS 131 131 ? ? ? A . n A 1 132 ASP 132 132 ? ? ? A . n A 1 133 GLU 133 133 ? ? ? A . n A 1 134 ARG 134 134 ? ? ? A . n A 1 135 LYS 135 135 ? ? ? A . n A 1 136 LEU 136 136 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 ARG 3 3 3 ARG ARG B . n B 1 4 GLN 4 4 4 GLN GLN B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 ILE 7 7 7 ILE ILE B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 MET 16 16 16 MET MET B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 TYR 18 18 18 TYR TYR B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 PHE 24 24 24 PHE PHE B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 LYS 33 33 33 LYS LYS B . n B 1 34 ASP 34 34 34 ASP ASP B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 TYR 38 38 38 TYR TYR B . n B 1 39 ARG 39 39 39 ARG ARG B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 CYS 41 41 41 CYS CYS B . n B 1 42 ASN 42 42 42 ASN ASN B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 GLU 44 44 44 GLU GLU B . n B 1 45 ASN 45 45 45 ASN ASN B . n B 1 46 ALA 46 46 46 ALA ALA B . n B 1 47 ALA 47 47 47 ALA ALA B . n B 1 48 TYR 48 48 48 TYR TYR B . n B 1 49 SER 49 49 49 SER SER B . n B 1 50 MET 50 50 50 MET MET B . n B 1 51 CYS 51 51 51 CYS CYS B . n B 1 52 ASN 52 52 52 ASN ASN B . n B 1 53 CYS 53 53 53 CYS CYS B . n B 1 54 ALA 54 54 54 ALA ALA B . n B 1 55 GLU 55 55 55 GLU GLU B . n B 1 56 GLN 56 56 56 GLN GLN B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 PHE 60 60 60 PHE PHE B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 THR 68 68 68 THR THR B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 PHE 70 70 70 PHE PHE B . n B 1 71 GLN 71 71 71 GLN GLN B . n B 1 72 MET 72 72 72 MET MET B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 ALA 74 74 74 ALA ALA B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 ALA 76 76 76 ALA ALA B . n B 1 77 ALA 77 77 77 ALA ALA B . n B 1 78 ASP 78 78 78 ASP ASP B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 PRO 80 80 80 PRO PRO B . n B 1 81 GLY 81 81 81 GLY GLY B . n B 1 82 PRO 82 82 82 PRO PRO B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 CYS 86 86 86 CYS CYS B . n B 1 87 GLY 87 87 87 GLY GLY B . n B 1 88 ALA 88 88 88 ALA ALA B . n B 1 89 CYS 89 89 89 CYS CYS B . n B 1 90 ARG 90 90 90 ARG ARG B . n B 1 91 GLN 91 91 91 GLN GLN B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 SER 94 94 94 SER SER B . n B 1 95 GLU 95 95 95 GLU GLU B . n B 1 96 LEU 96 96 96 LEU LEU B . n B 1 97 CYS 97 97 97 CYS CYS B . n B 1 98 THR 98 98 98 THR THR B . n B 1 99 LYS 99 99 99 LYS LYS B . n B 1 100 ASP 100 100 100 ASP ASP B . n B 1 101 VAL 101 101 101 VAL VAL B . n B 1 102 ILE 102 102 102 ILE ILE B . n B 1 103 VAL 103 103 103 VAL VAL B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 LEU 105 105 105 LEU LEU B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 ASN 107 107 107 ASN ASN B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 GLN 109 109 109 GLN GLN B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 GLN 111 111 111 GLN GLN B . n B 1 112 ILE 112 112 112 ILE ILE B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 MET 115 115 115 MET MET B . n B 1 116 THR 116 116 116 THR THR B . n B 1 117 VAL 117 117 117 VAL VAL B . n B 1 118 GLU 118 118 118 GLU GLU B . n B 1 119 GLU 119 119 119 GLU GLU B . n B 1 120 LEU 120 120 120 LEU LEU B . n B 1 121 LEU 121 121 121 LEU LEU B . n B 1 122 PRO 122 122 122 PRO PRO B . n B 1 123 GLY 123 123 123 GLY GLY B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 PHE 125 125 125 PHE PHE B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 SER 127 127 127 SER SER B . n B 1 128 GLU 128 128 128 GLU GLU B . n B 1 129 ASP 129 129 129 ASP ASP B . n B 1 130 LEU 130 130 130 LEU LEU B . n B 1 131 HIS 131 131 ? ? ? B . n B 1 132 ASP 132 132 ? ? ? B . n B 1 133 GLU 133 133 ? ? ? B . n B 1 134 ARG 134 134 ? ? ? B . n B 1 135 LYS 135 135 ? ? ? B . n B 1 136 LEU 136 136 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THU 1 138 138 THU THU A . D 3 ZN 1 1131 1131 ZN ZN A . E 2 THU 1 138 138 THU THU B . F 3 ZN 1 1131 1131 ZN ZN B . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2032 2032 HOH HOH A . G 4 HOH 33 2033 2033 HOH HOH A . G 4 HOH 34 2034 2034 HOH HOH A . G 4 HOH 35 2035 2035 HOH HOH A . G 4 HOH 36 2036 2036 HOH HOH A . G 4 HOH 37 2037 2037 HOH HOH A . G 4 HOH 38 2038 2038 HOH HOH A . G 4 HOH 39 2039 2039 HOH HOH A . G 4 HOH 40 2040 2040 HOH HOH A . G 4 HOH 41 2041 2041 HOH HOH A . G 4 HOH 42 2042 2042 HOH HOH A . G 4 HOH 43 2043 2043 HOH HOH A . G 4 HOH 44 2044 2044 HOH HOH A . G 4 HOH 45 2045 2045 HOH HOH A . G 4 HOH 46 2046 2046 HOH HOH A . G 4 HOH 47 2047 2047 HOH HOH A . G 4 HOH 48 2048 2048 HOH HOH A . G 4 HOH 49 2049 2049 HOH HOH A . G 4 HOH 50 2050 2050 HOH HOH A . G 4 HOH 51 2051 2051 HOH HOH A . G 4 HOH 52 2052 2052 HOH HOH A . G 4 HOH 53 2053 2053 HOH HOH A . G 4 HOH 54 2054 2054 HOH HOH A . G 4 HOH 55 2055 2055 HOH HOH A . G 4 HOH 56 2056 2056 HOH HOH A . G 4 HOH 57 2057 2057 HOH HOH A . G 4 HOH 58 2058 2058 HOH HOH A . G 4 HOH 59 2059 2059 HOH HOH A . G 4 HOH 60 2060 2060 HOH HOH A . G 4 HOH 61 2061 2061 HOH HOH A . G 4 HOH 62 2062 2062 HOH HOH A . G 4 HOH 63 2063 2063 HOH HOH A . G 4 HOH 64 2064 2064 HOH HOH A . G 4 HOH 65 2065 2065 HOH HOH A . G 4 HOH 66 2066 2066 HOH HOH A . G 4 HOH 67 2067 2067 HOH HOH A . G 4 HOH 68 2068 2068 HOH HOH A . G 4 HOH 69 2069 2069 HOH HOH A . G 4 HOH 70 2070 2070 HOH HOH A . G 4 HOH 71 2071 2071 HOH HOH A . G 4 HOH 72 2072 2072 HOH HOH A . G 4 HOH 73 2073 2073 HOH HOH A . G 4 HOH 74 2074 2074 HOH HOH A . G 4 HOH 75 2075 2075 HOH HOH A . H 4 HOH 1 2001 2001 HOH HOH B . H 4 HOH 2 2002 2002 HOH HOH B . H 4 HOH 3 2003 2003 HOH HOH B . H 4 HOH 4 2004 2004 HOH HOH B . H 4 HOH 5 2005 2005 HOH HOH B . H 4 HOH 6 2006 2006 HOH HOH B . H 4 HOH 7 2007 2007 HOH HOH B . H 4 HOH 8 2008 2008 HOH HOH B . H 4 HOH 9 2009 2009 HOH HOH B . H 4 HOH 10 2010 2010 HOH HOH B . H 4 HOH 11 2011 2011 HOH HOH B . H 4 HOH 12 2012 2012 HOH HOH B . H 4 HOH 13 2013 2013 HOH HOH B . H 4 HOH 14 2014 2014 HOH HOH B . H 4 HOH 15 2015 2015 HOH HOH B . H 4 HOH 16 2016 2016 HOH HOH B . H 4 HOH 17 2017 2017 HOH HOH B . H 4 HOH 18 2018 2018 HOH HOH B . H 4 HOH 19 2019 2019 HOH HOH B . H 4 HOH 20 2020 2020 HOH HOH B . H 4 HOH 21 2021 2021 HOH HOH B . H 4 HOH 22 2022 2022 HOH HOH B . H 4 HOH 23 2023 2023 HOH HOH B . H 4 HOH 24 2024 2024 HOH HOH B . H 4 HOH 25 2025 2025 HOH HOH B . H 4 HOH 26 2026 2026 HOH HOH B . H 4 HOH 27 2027 2027 HOH HOH B . H 4 HOH 28 2028 2028 HOH HOH B . H 4 HOH 29 2029 2029 HOH HOH B . H 4 HOH 30 2030 2030 HOH HOH B . H 4 HOH 31 2031 2031 HOH HOH B . H 4 HOH 32 2032 2032 HOH HOH B . H 4 HOH 33 2033 2033 HOH HOH B . H 4 HOH 34 2034 2034 HOH HOH B . H 4 HOH 35 2035 2035 HOH HOH B . H 4 HOH 36 2036 2036 HOH HOH B . H 4 HOH 37 2037 2037 HOH HOH B . H 4 HOH 38 2038 2038 HOH HOH B . H 4 HOH 39 2039 2039 HOH HOH B . H 4 HOH 40 2040 2040 HOH HOH B . H 4 HOH 41 2041 2041 HOH HOH B . H 4 HOH 42 2042 2042 HOH HOH B . H 4 HOH 43 2043 2043 HOH HOH B . H 4 HOH 44 2044 2044 HOH HOH B . H 4 HOH 45 2045 2045 HOH HOH B . H 4 HOH 46 2046 2046 HOH HOH B . H 4 HOH 47 2047 2047 HOH HOH B . H 4 HOH 48 2048 2048 HOH HOH B . H 4 HOH 49 2049 2049 HOH HOH B . H 4 HOH 50 2050 2050 HOH HOH B . H 4 HOH 51 2051 2051 HOH HOH B . H 4 HOH 52 2052 2052 HOH HOH B . H 4 HOH 53 2053 2053 HOH HOH B . H 4 HOH 54 2054 2054 HOH HOH B . H 4 HOH 55 2055 2055 HOH HOH B . H 4 HOH 56 2056 2056 HOH HOH B . H 4 HOH 57 2057 2057 HOH HOH B . H 4 HOH 58 2058 2058 HOH HOH B . H 4 HOH 59 2059 2059 HOH HOH B . H 4 HOH 60 2060 2060 HOH HOH B . H 4 HOH 61 2061 2061 HOH HOH B . H 4 HOH 62 2062 2062 HOH HOH B . H 4 HOH 63 2063 2063 HOH HOH B . H 4 HOH 64 2064 2064 HOH HOH B . H 4 HOH 65 2065 2065 HOH HOH B . H 4 HOH 66 2066 2066 HOH HOH B . H 4 HOH 67 2067 2067 HOH HOH B . H 4 HOH 68 2068 2068 HOH HOH B . H 4 HOH 69 2069 2069 HOH HOH B . H 4 HOH 70 2070 2070 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1.0000000000 0.0000000000 0.0000000000 26.8364921857 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 100.0951454412 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 53 ? A CYS 53 ? 1_555 ZN ? D ZN . ? A ZN 1131 ? 1_555 SG ? A CYS 86 ? A CYS 86 ? 1_555 111.6 ? 2 SG ? A CYS 53 ? A CYS 53 ? 1_555 ZN ? D ZN . ? A ZN 1131 ? 1_555 O4 ? C THU . ? A THU 138 ? 1_555 114.8 ? 3 SG ? A CYS 86 ? A CYS 86 ? 1_555 ZN ? D ZN . ? A ZN 1131 ? 1_555 O4 ? C THU . ? A THU 138 ? 1_555 108.7 ? 4 SG ? A CYS 53 ? A CYS 53 ? 1_555 ZN ? D ZN . ? A ZN 1131 ? 1_555 SG ? A CYS 89 ? A CYS 89 ? 1_555 102.6 ? 5 SG ? A CYS 86 ? A CYS 86 ? 1_555 ZN ? D ZN . ? A ZN 1131 ? 1_555 SG ? A CYS 89 ? A CYS 89 ? 1_555 119.8 ? 6 O4 ? C THU . ? A THU 138 ? 1_555 ZN ? D ZN . ? A ZN 1131 ? 1_555 SG ? A CYS 89 ? A CYS 89 ? 1_555 99.0 ? 7 SG ? B CYS 53 ? B CYS 53 ? 1_555 ZN ? F ZN . ? B ZN 1131 ? 1_555 O4 ? E THU . ? B THU 138 ? 1_555 115.5 ? 8 SG ? B CYS 53 ? B CYS 53 ? 1_555 ZN ? F ZN . ? B ZN 1131 ? 1_555 SG ? B CYS 86 ? B CYS 86 ? 1_555 113.4 ? 9 O4 ? E THU . ? B THU 138 ? 1_555 ZN ? F ZN . ? B ZN 1131 ? 1_555 SG ? B CYS 86 ? B CYS 86 ? 1_555 108.7 ? 10 SG ? B CYS 53 ? B CYS 53 ? 1_555 ZN ? F ZN . ? B ZN 1131 ? 1_555 SG ? B CYS 89 ? B CYS 89 ? 1_555 101.4 ? 11 O4 ? E THU . ? B THU 138 ? 1_555 ZN ? F ZN . ? B ZN 1131 ? 1_555 SG ? B CYS 89 ? B CYS 89 ? 1_555 97.0 ? 12 SG ? B CYS 86 ? B CYS 86 ? 1_555 ZN ? F ZN . ? B ZN 1131 ? 1_555 SG ? B CYS 89 ? B CYS 89 ? 1_555 120.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-20 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-17 5 'Structure model' 1 4 2019-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_exptl_crystal_grow.method' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 1UX0 _pdbx_entry_details.compound_details ;ENGINEERED MUTATION ARG 56 GLN IN CHAINS A AND B. THIS ENZYME SCAVENGES EXOGENOUS AND ENDOGENOUS CYTIDINE AND 2'-DEOXYCYTIDINE FOR UMP SYNTHESIS. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THIS IS AN R56Q MUTANT ENZYME' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 107 ? ? -122.89 -148.05 2 1 LEU A 121 ? ? -152.29 78.98 3 1 ASN B 107 ? ? -116.93 -149.60 4 1 LEU B 121 ? ? -153.17 76.92 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C1'" ? A THU 138 ? PLANAR . 2 1 "C1'" ? B THU 138 ? PLANAR . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 131 ? A HIS 131 2 1 Y 1 A ASP 132 ? A ASP 132 3 1 Y 1 A GLU 133 ? A GLU 133 4 1 Y 1 A ARG 134 ? A ARG 134 5 1 Y 1 A LYS 135 ? A LYS 135 6 1 Y 1 A LEU 136 ? A LEU 136 7 1 Y 1 B HIS 131 ? B HIS 131 8 1 Y 1 B ASP 132 ? B ASP 132 9 1 Y 1 B GLU 133 ? B GLU 133 10 1 Y 1 B ARG 134 ? B ARG 134 11 1 Y 1 B LYS 135 ? B LYS 135 12 1 Y 1 B LEU 136 ? B LEU 136 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 TETRAHYDRODEOXYURIDINE THU 3 'ZINC ION' ZN 4 water HOH #