HEADER OXIDOREDUCTASE 01-MAR-04 1UXU TITLE STRUCTURAL BASIS FOR ALLOSTERIC REGULATION AND SUBSTRATE SPECIFICITY TITLE 2 OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE TITLE 3 (GAPN) FROM THERMOPROTEUS TENAX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+); COMPND 3 CHAIN: A; COMPND 4 EC: 1.2.1.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: GLYCERALDEHYDE 3-PHOSPHATE, AMP AND NADP(H) BOUND COMPND 8 NONCOVALENTLY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPROTEUS TENAX; SOURCE 3 ORGANISM_TAXID: 2271; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS GAPN, ALDH, AMP, GLYCERALDEHYDE 3-PHOSPHATE, GLYCOLYSIS, REGULATION, KEYWDS 2 CATALYSIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.LORENTZEN,R.HENSEL,E.POHL REVDAT 4 13-DEC-23 1UXU 1 REMARK LINK REVDAT 3 24-JUL-19 1UXU 1 REMARK REVDAT 2 24-FEB-09 1UXU 1 VERSN REVDAT 1 05-AUG-04 1UXU 0 JRNL AUTH E.LORENTZEN,R.HENSEL,T.KNURA,H.AHMED,E.POHL JRNL TITL STRUCTURAL BASIS OF ALLOSTERIC REGULATION AND SUBSTRATE JRNL TITL 2 SPECIFICITY OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE JRNL TITL 3 3-PHOSPHATE DEHYDROGENASE FROM THERMOPROTEUS TENAX JRNL REF J.MOL.BIOL. V. 341 815 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15288789 JRNL DOI 10.1016/J.JMB.2004.05.032 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 56679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3777 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.31800 REMARK 3 B22 (A**2) : 3.31800 REMARK 3 B33 (A**2) : -6.63500 REMARK 3 B12 (A**2) : -0.81100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1-2 NOT MODELED, RESIDUES 499 REMARK 3 -501 AS ALANINES REMARK 4 REMARK 4 1UXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8453 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1KY8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE PH 5.6, 0.1 M SODIUM REMARK 280 ACETATE PH 5.6, 50 MM AMP, 1 MM GLYCERALDEHYDE 3-PHOSPHATE, PH REMARK 280 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.86000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.93000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.86000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.93000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.86000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 43.93000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 87.86000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.93000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -92.64500 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 160.46585 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -92.64500 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 160.46585 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 43.93000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION LEU 378 PHE IN CHAIN A REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 ASP A 328 CG OD1 OD2 REMARK 470 LYS A 499 CG CD CE NZ REMARK 470 TYR A 500 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 156 O HOH A 2115 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 -78.76 -35.15 REMARK 500 VAL A 9 -60.56 -96.16 REMARK 500 LEU A 23 43.68 -93.22 REMARK 500 ASP A 41 23.18 -148.79 REMARK 500 LEU A 42 18.31 45.77 REMARK 500 ALA A 46 178.69 179.66 REMARK 500 PRO A 108 155.26 -49.90 REMARK 500 ASP A 196 68.93 -156.57 REMARK 500 ARG A 307 -63.39 -27.57 REMARK 500 PRO A 308 -3.21 -59.19 REMARK 500 ASP A 331 109.62 -59.29 REMARK 500 PRO A 332 -5.41 -54.38 REMARK 500 ARG A 385 -11.07 -141.34 REMARK 500 PHE A 397 89.96 -67.75 REMARK 500 LEU A 423 -75.12 -85.95 REMARK 500 LYS A 466 -133.78 52.52 REMARK 500 PHE A 471 178.99 77.06 REMARK 500 LYS A 499 73.99 -111.64 REMARK 500 TYR A 500 67.52 68.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP A 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 754 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 249 OE2 REMARK 620 2 GLY A 255 O 100.7 REMARK 620 3 HOH A2147 O 83.1 171.6 REMARK 620 4 HOH A2153 O 80.1 98.4 89.6 REMARK 620 5 HOH A2159 O 96.1 89.0 83.1 172.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 754 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3H A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KY8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3- REMARK 900 PHOSPHATE DEHYDROGENASE REMARK 900 RELATED ID: 1UXN RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR ALLOSTERIC REGULATION AND SUBSTRATE REMARK 900 SPECIFICITY OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE REMARK 900 DEHYDROGENASE (GAPN) THERMOPROTEUS TENAX REMARK 900 RELATED ID: 1UXT RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR ALLOSTERIC REGULATION AND SUBSTRATE REMARK 900 SPECIFICITY OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE REMARK 900 DEHYDROGENASE (GAPN) THERMOPROTEUS TENAX REMARK 900 RELATED ID: 1UXP RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR ALLOSTERIC REGULATION AND SUBSTRATE REMARK 900 SPECIFICITY OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE REMARK 900 DEHYDROGENASE (GAPN) THERMOPROTEUS TENAX REMARK 900 RELATED ID: 1UXQ RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR ALLOSTERIC REGULATION AND SUBSTRATE REMARK 900 SPECIFICITY OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE REMARK 900 DEHYDROGENASE (GAPN) THERMOPROTEUS TENAX REMARK 900 RELATED ID: 1UXR RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR ALLOSTERIC REGULATION AND SUBSTRATE REMARK 900 SPECIFICITY OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE REMARK 900 DEHYDROGENASE (GAPN) THERMOPROTEUS TENAX REMARK 900 RELATED ID: 1UXV RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR ALLOSTERIC REGULATION AND SUBSTRATE REMARK 900 SPECIFICITY OF THE NON-PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE REMARK 900 DEHYDROGENASE (GAPN) THERMOPROTEUS TENAX REMARK 999 REMARK 999 SEQUENCE REMARK 999 SER 402 LEU IS DUE TO A SEQUENCING ERROR DBREF 1UXU A 1 501 UNP O57693 O57693 1 501 SEQADV 1UXU PHE A 378 UNP O57693 LEU 378 ENGINEERED MUTATION SEQADV 1UXU LEU A 402 UNP O57693 SER 402 CONFLICT SEQRES 1 A 501 MET ARG ALA GLY LEU LEU GLU GLY VAL ILE LYS GLU LYS SEQRES 2 A 501 GLY GLY VAL PRO VAL TYR PRO SER TYR LEU ALA GLY GLU SEQRES 3 A 501 TRP GLY GLY SER GLY GLN GLU ILE GLU VAL LYS SER PRO SEQRES 4 A 501 ILE ASP LEU ALA THR ILE ALA LYS VAL ILE SER PRO SER SEQRES 5 A 501 ARG GLU GLU VAL GLU ARG THR LEU ASP VAL LEU PHE LYS SEQRES 6 A 501 ARG GLY ARG TRP SER ALA ARG ASP MET PRO GLY THR GLU SEQRES 7 A 501 ARG LEU ALA VAL LEU ARG LYS ALA ALA ASP ILE ILE GLU SEQRES 8 A 501 ARG ASN LEU ASP VAL PHE ALA GLU VAL LEU VAL MET ASN SEQRES 9 A 501 ALA GLY LYS PRO LYS SER ALA ALA VAL GLY GLU VAL LYS SEQRES 10 A 501 ALA ALA VAL ASP ARG LEU ARG LEU ALA GLU LEU ASP LEU SEQRES 11 A 501 LYS LYS ILE GLY GLY ASP TYR ILE PRO GLY ASP TRP THR SEQRES 12 A 501 TYR ASP THR LEU GLU THR GLU GLY LEU VAL ARG ARG GLU SEQRES 13 A 501 PRO LEU GLY VAL VAL ALA ALA ILE THR PRO PHE ASN TYR SEQRES 14 A 501 PRO LEU PHE ASP ALA VAL ASN LYS ILE THR TYR SER PHE SEQRES 15 A 501 ILE TYR GLY ASN ALA VAL VAL VAL LYS PRO SER ILE SER SEQRES 16 A 501 ASP PRO LEU PRO ALA ALA MET ALA VAL LYS ALA LEU LEU SEQRES 17 A 501 ASP ALA GLY PHE PRO PRO ASP ALA ILE ALA LEU LEU ASN SEQRES 18 A 501 LEU PRO GLY LYS GLU ALA GLU LYS ILE VAL ALA ASP ASP SEQRES 19 A 501 ARG VAL ALA ALA VAL SER PHE THR GLY SER THR GLU VAL SEQRES 20 A 501 GLY GLU ARG VAL VAL LYS VAL GLY GLY VAL LYS GLN TYR SEQRES 21 A 501 VAL MET GLU LEU GLY GLY GLY ASP PRO ALA ILE VAL LEU SEQRES 22 A 501 GLU ASP ALA ASP LEU ASP LEU ALA ALA ASP LYS ILE ALA SEQRES 23 A 501 ARG GLY ILE TYR SER TYR ALA GLY GLN ARG CYS ASP ALA SEQRES 24 A 501 ILE LYS LEU VAL LEU ALA GLU ARG PRO VAL TYR GLY LYS SEQRES 25 A 501 LEU VAL GLU GLU VAL ALA LYS ARG LEU SER SER LEU ARG SEQRES 26 A 501 VAL GLY ASP PRO ARG ASP PRO THR VAL ASP VAL GLY PRO SEQRES 27 A 501 LEU ILE SER PRO SER ALA VAL ASP GLU MET MET ALA ALA SEQRES 28 A 501 ILE GLU ASP ALA VAL GLU LYS GLY GLY ARG VAL LEU ALA SEQRES 29 A 501 GLY GLY ARG ARG LEU GLY PRO THR TYR VAL GLN PRO THR SEQRES 30 A 501 PHE VAL GLU ALA PRO ALA ASP ARG VAL LYS ASP MET VAL SEQRES 31 A 501 LEU TYR LYS ARG GLU VAL PHE ALA PRO VAL ALA LEU ALA SEQRES 32 A 501 VAL GLU VAL LYS ASP LEU ASP GLN ALA ILE GLU LEU ALA SEQRES 33 A 501 ASN GLY ARG PRO TYR GLY LEU ASP ALA ALA VAL PHE GLY SEQRES 34 A 501 ARG ASP VAL VAL LYS ILE ARG ARG ALA VAL ARG LEU LEU SEQRES 35 A 501 GLU VAL GLY ALA ILE TYR ILE ASN ASP MET PRO ARG HIS SEQRES 36 A 501 GLY ILE GLY TYR TYR PRO PHE GLY GLY ARG LYS LYS SER SEQRES 37 A 501 GLY VAL PHE ARG GLU GLY ILE GLY TYR ALA VAL GLU ALA SEQRES 38 A 501 VAL THR ALA TYR LYS THR ILE VAL PHE ASN TYR LYS GLY SEQRES 39 A 501 LYS GLY VAL TRP LYS TYR GLU HET NAP A 502 39 HET AMP A 503 23 HET G3H A 504 10 HET NA A 754 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM G3H GLYCERALDEHYDE-3-PHOSPHATE HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 G3H C3 H7 O6 P FORMUL 5 NA NA 1+ FORMUL 6 HOH *287(H2 O) HELIX 1 1 ALA A 3 GLU A 7 5 5 HELIX 2 2 SER A 52 ARG A 66 1 15 HELIX 3 3 ARG A 66 ASP A 73 1 8 HELIX 4 4 PRO A 75 ASN A 93 1 19 HELIX 5 5 ASN A 93 GLY A 106 1 14 HELIX 6 6 PRO A 108 LEU A 125 1 18 HELIX 7 7 ALA A 126 ILE A 133 5 8 HELIX 8 8 THR A 143 LEU A 147 5 5 HELIX 9 9 LEU A 171 TYR A 184 1 14 HELIX 10 10 PRO A 197 GLY A 211 1 15 HELIX 11 11 PRO A 223 GLU A 226 5 4 HELIX 12 12 ALA A 227 ALA A 232 1 6 HELIX 13 13 SER A 244 GLY A 256 1 13 HELIX 14 14 ASP A 277 SER A 291 1 15 HELIX 15 15 TYR A 292 GLN A 295 5 4 HELIX 16 16 ARG A 307 SER A 323 1 17 HELIX 17 17 SER A 341 LYS A 358 1 18 HELIX 18 18 PRO A 382 LYS A 387 1 6 HELIX 19 19 MET A 389 ARG A 394 1 6 HELIX 20 20 ASP A 408 GLY A 418 1 11 HELIX 21 21 ASP A 431 LEU A 442 1 12 HELIX 22 22 ALA A 478 VAL A 482 1 5 SHEET 1 AA 3 VAL A 18 TYR A 19 0 SHEET 2 AA 3 THR A 44 ILE A 49 1 O LYS A 47 N TYR A 19 SHEET 3 AA 3 GLU A 33 LYS A 37 -1 O ILE A 34 N VAL A 48 SHEET 1 AB 2 SER A 21 TYR A 22 0 SHEET 2 AB 2 TRP A 27 GLY A 28 -1 O GLY A 28 N SER A 21 SHEET 1 AC 3 ASP A 136 PRO A 139 0 SHEET 2 AC 3 THR A 149 PRO A 157 -1 O GLY A 151 N ILE A 138 SHEET 3 AC 3 THR A 483 ASN A 491 -1 O ALA A 484 N GLU A 156 SHEET 1 AD 6 ILE A 217 LEU A 219 0 SHEET 2 AD 6 ALA A 187 LYS A 191 1 O VAL A 188 N ALA A 218 SHEET 3 AD 6 VAL A 160 ILE A 164 1 O VAL A 161 N VAL A 189 SHEET 4 AD 6 ALA A 238 THR A 242 1 O ALA A 238 N ALA A 162 SHEET 5 AD 6 GLN A 259 GLU A 263 1 O GLN A 259 N VAL A 239 SHEET 6 AD 6 GLY A 469 VAL A 470 -1 O VAL A 470 N MET A 262 SHEET 1 AE 7 ARG A 361 ALA A 364 0 SHEET 2 AE 7 THR A 377 GLU A 380 -1 O PHE A 378 N LEU A 363 SHEET 3 AE 7 VAL A 400 VAL A 406 1 O ALA A 401 N VAL A 379 SHEET 4 AE 7 ILE A 300 GLU A 306 1 O LYS A 301 N LEU A 402 SHEET 5 AE 7 ASP A 268 VAL A 272 1 O ASP A 268 N LYS A 301 SHEET 6 AE 7 ASP A 424 PHE A 428 1 O ALA A 426 N ILE A 271 SHEET 7 AE 7 ALA A 446 ILE A 449 1 O ALA A 446 N ALA A 425 SHEET 1 AF 2 ARG A 368 GLY A 370 0 SHEET 2 AF 2 TYR A 373 VAL A 374 -1 O TYR A 373 N LEU A 369 SHEET 1 AG 2 TYR A 421 GLY A 422 0 SHEET 2 AG 2 ARG A 465 LYS A 466 -1 N ARG A 465 O GLY A 422 LINK OE2 GLU A 249 NA NA A 754 9555 1555 2.39 LINK O GLY A 255 NA NA A 754 1555 1555 2.34 LINK NA NA A 754 O HOH A2147 1555 1555 2.41 LINK NA NA A 754 O HOH A2153 1555 9555 2.31 LINK NA NA A 754 O HOH A2159 1555 1555 2.41 SITE 1 AC1 6 GLU A 249 GLY A 255 HOH A2147 HOH A2148 SITE 2 AC1 6 HOH A2153 HOH A2159 SITE 1 AC2 21 ILE A 164 THR A 165 PRO A 166 PHE A 167 SITE 2 AC2 21 LYS A 191 SER A 193 ILE A 194 PRO A 223 SITE 3 AC2 21 GLY A 224 GLU A 228 PHE A 241 GLY A 243 SITE 4 AC2 21 SER A 244 VAL A 247 GLU A 395 PHE A 397 SITE 5 AC2 21 HOH A2275 HOH A2277 HOH A2278 HOH A2279 SITE 6 AC2 21 HOH A2285 SITE 1 AC3 15 ARG A 72 ARG A 79 ILE A 133 GLY A 134 SITE 2 AC3 15 GLY A 135 PRO A 139 ASP A 141 TRP A 142 SITE 3 AC3 15 ARG A 154 ARG A 155 ARG A 440 TRP A 498 SITE 4 AC3 15 HOH A2115 HOH A2280 HOH A2281 SITE 1 AC4 12 ASN A 168 TYR A 169 ARG A 296 CYS A 297 SITE 2 AC4 12 ASP A 298 ARG A 454 HIS A 455 GLY A 456 SITE 3 AC4 12 HOH A2245 HOH A2283 HOH A2285 HOH A2286 CRYST1 185.290 185.290 131.790 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005397 0.003116 0.000000 0.00000 SCALE2 0.000000 0.006232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007588 0.00000