HEADER MEMBRANE PROTEIN 02-MAR-04 1UYO TITLE TRANSLOCATOR DOMAIN OF AUTOTRANSPORTER NALP FROM NEISSERIA TITLE 2 MENINGITIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NALP; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: OUTER MEMBRANE TRANSLOCATOR DOMAIN, RESIDUES 776-1083; COMPND 5 SYNONYM: OUTER MEMBRANE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 STRAIN: H44/76; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 9 OTHER_DETAILS: OUTER MEMBRANE. REFOLDED PROTEIN KEYWDS AUTOTRANSPORTER, TRANSLOCATOR DOMAIN, MEMBRANE PROTEIN, OUTER KEYWDS 2 MEMBRANE, BETA-DOMAIN, BETA-BARREL EXPDTA X-RAY DIFFRACTION AUTHOR C.J.OOMEN,P.VAN ULSEN,P.VAN GELDER,M.FEIJEN,J.TOMMASSEN,P.GROS REVDAT 4 24-JUL-19 1UYO 1 REMARK LINK REVDAT 3 24-FEB-09 1UYO 1 VERSN REVDAT 2 17-NOV-04 1UYO 1 JRNL REVDAT 1 19-MAR-04 1UYO 0 JRNL AUTH C.J.OOMEN,P.VAN ULSEN,P.VAN GELDER,M.FEIJEN,J.TOMMASSEN, JRNL AUTH 2 P.GROS JRNL TITL STRUCTURE OF THE TRANSLOCATOR DOMAIN OF A BACTERIAL JRNL TITL 2 AUTOTRANSPORTER JRNL REF EMBO J. V. 23 1257 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15014442 JRNL DOI 10.1038/SJ.EMBOJ.7600148 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 4470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 208 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.86000 REMARK 3 B22 (A**2) : 1.53000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.668 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.461 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.820 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2001 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2691 ; 1.917 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 8.429 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1511 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 756 ; 0.279 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.299 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.500 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.811 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5100 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.20600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 88 MM TRIS-HCL, PH 7.0, 9% PEG2000MME REMARK 280 18% MPD. PROTEIN WAS CRYSTALLISED IN THE PRESENSE OF 0.06%, N- REMARK 280 DECYLPENTAOXYETHYLENE AND 0.5% HEPTYL-B-GLUCOPYRANOSIDE AND 10 REMARK 280 MM DTT, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.49150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.49150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.44650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.44650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.49150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.71500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.44650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.49150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.71500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.44650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP X 777 REMARK 465 GLY X 778 REMARK 465 VAL X 779 REMARK 465 ARG X 780 REMARK 465 ILE X 781 REMARK 465 PHE X 782 REMARK 465 ASN X 783 REMARK 465 SER X 784 REMARK 465 ASN X 815 REMARK 465 GLY X 816 REMARK 465 GLN X 834 REMARK 465 GLY X 835 REMARK 465 GLY X 836 REMARK 465 PHE X 943 REMARK 465 ALA X 944 REMARK 465 ALA X 945 REMARK 465 GLY X 1022 REMARK 465 PHE X 1023 REMARK 465 THR X 1024 REMARK 465 GLY X 1025 REMARK 465 ALA X 1026 REMARK 465 THR X 1027 REMARK 465 ALA X 1028 REMARK 465 ALA X 1029 REMARK 465 THR X 1030 REMARK 465 GLY X 1031 REMARK 465 LYS X 1032 REMARK 465 THR X 1033 REMARK 465 GLY X 1034 REMARK 465 ALA X 1035 REMARK 465 ARG X 1036 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU X 785 CG CD1 CD2 REMARK 470 HIS X 814 CG ND1 CD2 CE1 NE2 REMARK 470 TRP X 832 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP X 832 CZ3 CH2 REMARK 470 GLU X 833 CG CD OE1 OE2 REMARK 470 VAL X 837 CG1 CG2 REMARK 470 GLU X 873 CG CD OE1 OE2 REMARK 470 SER X 915 OG REMARK 470 THR X 916 OG1 CG2 REMARK 470 ASP X 919 CG OD1 OD2 REMARK 470 GLU X 920 CG CD OE1 OE2 REMARK 470 THR X 946 OG1 CG2 REMARK 470 GLU X 967 CG CD OE1 OE2 REMARK 470 LYS X 968 CG CD CE NZ REMARK 470 SER X 970 OG REMARK 470 LEU X 972 CG CD1 CD2 REMARK 470 TRP X 974 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP X 974 CZ3 CH2 REMARK 470 ASN X1037 CG OD1 ND2 REMARK 470 SER X1068 OG REMARK 470 LYS X1069 CG CD CE NZ REMARK 470 TYR X1071 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA X 787 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP X 828 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 LEU X1047 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 787 -22.20 166.11 REMARK 500 TYR X 790 -74.78 -44.86 REMARK 500 LEU X 819 122.63 -10.02 REMARK 500 GLU X 873 -167.93 -123.69 REMARK 500 LEU X 936 121.23 -171.87 REMARK 500 SER X 978 175.97 -55.99 REMARK 500 ASP X 998 39.45 -84.24 REMARK 500 LYS X 999 27.76 -171.52 REMARK 500 ALA X1000 131.25 179.01 REMARK 500 GLU X1009 113.26 -163.52 REMARK 500 HIS X1040 -120.99 -114.23 REMARK 500 THR X1041 126.26 -28.29 REMARK 500 LEU X1060 139.05 -175.31 REMARK 500 GLN X1070 41.37 88.77 REMARK 500 TYR X1071 86.74 170.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU X 819 ARG X 820 146.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CXE X 2085 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXE X2085 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UYN RELATED DB: PDB REMARK 900 STRUCTURE OF TRANSLOCATOR DOMAIN OF AUTOTRANSPORTER NALP FROM REMARK 900 NEISSERIA MENINGITIDIS DBREF 1UYO X 777 1084 UNP Q8GKS5 Q8GKS5 776 1083 SEQRES 1 X 308 ASP GLY VAL ARG ILE PHE ASN SER LEU ALA ALA THR VAL SEQRES 2 X 308 TYR ALA ASP SER THR ALA ALA HIS ALA ASP MSE GLN GLY SEQRES 3 X 308 ARG ARG LEU LYS ALA VAL SER ASP GLY LEU ASP HIS ASN SEQRES 4 X 308 GLY THR GLY LEU ARG VAL ILE ALA GLN THR GLN GLN ASP SEQRES 5 X 308 GLY GLY THR TRP GLU GLN GLY GLY VAL GLU GLY LYS MSE SEQRES 6 X 308 ARG GLY SER THR GLN THR VAL GLY ILE ALA ALA LYS THR SEQRES 7 X 308 GLY GLU ASN THR THR ALA ALA ALA THR LEU GLY MSE GLY SEQRES 8 X 308 ARG SER THR TRP SER GLU ASN SER ALA ASN ALA LYS THR SEQRES 9 X 308 ASP SER ILE SER LEU PHE ALA GLY ILE ARG HIS ASP ALA SEQRES 10 X 308 GLY ASP ILE GLY TYR LEU LYS GLY LEU PHE SER TYR GLY SEQRES 11 X 308 ARG TYR LYS ASN SER ILE SER ARG SER THR GLY ALA ASP SEQRES 12 X 308 GLU HIS ALA GLU GLY SER VAL ASN GLY THR LEU MSE GLN SEQRES 13 X 308 LEU GLY ALA LEU GLY GLY VAL ASN VAL PRO PHE ALA ALA SEQRES 14 X 308 THR GLY ASP LEU THR VAL GLU GLY GLY LEU ARG TYR ASP SEQRES 15 X 308 LEU LEU LYS GLN ASP ALA PHE ALA GLU LYS GLY SER ALA SEQRES 16 X 308 LEU GLY TRP SER GLY ASN SER LEU THR GLU GLY THR LEU SEQRES 17 X 308 VAL GLY LEU ALA GLY LEU LYS LEU SER GLN PRO LEU SER SEQRES 18 X 308 ASP LYS ALA VAL LEU PHE ALA THR ALA GLY VAL GLU ARG SEQRES 19 X 308 ASP LEU ASN GLY ARG ASP TYR THR VAL THR GLY GLY PHE SEQRES 20 X 308 THR GLY ALA THR ALA ALA THR GLY LYS THR GLY ALA ARG SEQRES 21 X 308 ASN MSE PRO HIS THR ARG LEU VAL ALA GLY LEU GLY ALA SEQRES 22 X 308 ASP VAL GLU PHE GLY ASN GLY TRP ASN GLY LEU ALA ARG SEQRES 23 X 308 TYR SER TYR ALA GLY SER LYS GLN TYR GLY ASN HIS SER SEQRES 24 X 308 GLY ARG VAL GLY VAL GLY TYR ARG PHE MODRES 1UYO MSE X 800 MET SELENOMETHIONINE MODRES 1UYO MSE X 841 MET SELENOMETHIONINE MODRES 1UYO MSE X 866 MET SELENOMETHIONINE MODRES 1UYO MSE X 931 MET SELENOMETHIONINE MODRES 1UYO MSE X 1038 MET SELENOMETHIONINE HET MSE X 800 8 HET MSE X 841 8 HET MSE X 866 8 HET MSE X 931 8 HET MSE X1038 8 HET CXE X2085 10 HETNAM MSE SELENOMETHIONINE HETNAM CXE PENTAETHYLENE GLYCOL MONODECYL ETHER FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CXE C20 H42 O6 HELIX 1 1 ALA X 787 HIS X 814 1 28 SHEET 1 XA13 ARG X 820 THR X 831 0 SHEET 2 XA13 GLY X1072 ARG X1083 -1 O GLY X1072 N THR X 831 SHEET 3 XA13 ASN X1058 GLY X1067 -1 N ASN X1058 O GLY X1081 SHEET 4 XA13 ARG X1042 GLU X1052 -1 O LEU X1043 N GLY X1067 SHEET 5 XA13 ALA X1000 GLU X1009 -1 O VAL X1001 N ASP X1050 SHEET 6 XA13 LEU X 979 SER X 997 -1 O ALA X 988 N VAL X1008 SHEET 7 XA13 ASP X 948 GLN X 962 -1 O ASP X 948 N SER X 993 SHEET 8 XA13 GLU X 920 VAL X 941 -1 O THR X 929 N LYS X 961 SHEET 9 XA13 GLY X 897 GLY X 917 -1 O TYR X 898 N GLY X 938 SHEET 10 XA13 ALA X 876 ALA X 893 -1 O ASN X 877 N SER X 913 SHEET 11 XA13 THR X 858 SER X 872 -1 O THR X 859 N ARG X 890 SHEET 12 XA13 LYS X 840 GLY X 855 -1 O LYS X 840 N SER X 872 SHEET 13 XA13 ARG X 820 THR X 831 -1 O ILE X 822 N GLY X 849 LINK C ASP X 799 N MSE X 800 1555 1555 1.34 LINK C MSE X 800 N GLN X 801 1555 1555 1.34 LINK C LYS X 840 N MSE X 841 1555 1555 1.34 LINK C MSE X 841 N ARG X 842 1555 1555 1.34 LINK C GLY X 865 N MSE X 866 1555 1555 1.32 LINK C MSE X 866 N GLY X 867 1555 1555 1.33 LINK C LEU X 930 N MSE X 931 1555 1555 1.32 LINK C MSE X 931 N GLN X 932 1555 1555 1.32 LINK C ASN X1037 N MSE X1038 1555 1555 1.33 LINK C MSE X1038 N PRO X1039 1555 1555 1.34 SITE 1 AC1 3 GLY X 901 LEU X 902 PHE X 903 CRYST1 57.430 84.893 122.983 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008131 0.00000