HEADER TRANSFERASE 12-MAR-04 1UZI TITLE C3 EXOENZYME FROM CLOSTRIDIUM BOTULINUM, TETRAGONAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONO-ADP-RIBOSYLTRANSFERASE C3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: C3BOT1, EXOENZYME C3; COMPND 5 EC: 2.4.2.30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 STRAIN: 468C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PBCMALE KEYWDS TRANSFERASE, C3, ADP-RIBOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.R.EVANS,D.E.HOLLOWAY,J.M.SUTTON,J.AYRISS,C.C.SHONE,K.R.ACHARYA REVDAT 3 13-DEC-23 1UZI 1 REMARK REVDAT 2 24-FEB-09 1UZI 1 VERSN REVDAT 1 29-JUL-04 1UZI 0 JRNL AUTH H.R.EVANS,D.E.HOLLOWAY,J.M.SUTTON,J.AYRISS,C.C.SHONE, JRNL AUTH 2 K.R.ACHARYA JRNL TITL C3 EXOENZYME FROM CLOSTRIDIUM BOTULINUM: STRUCTURE OF A JRNL TITL 2 TETRAGONAL CRYSTAL FORM AND A REASSESSMENT OF NAD-INDUCED JRNL TITL 3 FLEXURE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1502 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15272191 JRNL DOI 10.1107/S0907444904011680 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 39752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5837 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 348 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : 2.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.144 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3407 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 4584 ; 1.644 ; 1.970 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 6.259 ; 5.000 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2492 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1487 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 284 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2091 ; 1.587 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3357 ; 2.476 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1316 ; 3.694 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1227 ; 5.240 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : RH-COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 3% SAT. NA3VO4, 0.15M REMARK 280 NACL,0.1M IMIDAZOLE/MALATE, PH5.5, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.64650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.64650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.11650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.64650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.64650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.11650 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 36.64650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 36.64650 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 109.11650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 36.64650 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 36.64650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 109.11650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2060 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 41 N CA CB REMARK 470 ASP A 53 CB CG OD1 OD2 REMARK 470 LYS A 56 CD CE NZ REMARK 470 LYS A 64 CD CE NZ REMARK 470 LYS A 65 NZ REMARK 470 LYS A 70 CE NZ REMARK 470 LYS A 73 NZ REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 LYS A 94 CE NZ REMARK 470 LYS A 106 CD CE NZ REMARK 470 SER A 146 CB OG REMARK 470 ASN A 147 CB CG OD1 ND2 REMARK 470 ILE A 150 CB CG1 CG2 CD1 REMARK 470 THR A 153 CB OG1 CG2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 159 CE NZ REMARK 470 LYS A 165 NZ REMARK 470 SER A 181 CB OG REMARK 470 GLN A 182 CB CG CD OE1 NE2 REMARK 470 SER A 232 OG REMARK 470 ASP A 233 CB CG OD1 OD2 REMARK 470 LYS A 235 CB CG CD CE NZ REMARK 470 LYS A 251 C O CB CG CD CE NZ REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 LYS B 56 CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 65 CE NZ REMARK 470 LYS B 70 CD CE NZ REMARK 470 LYS B 73 NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 LYS B 94 CE NZ REMARK 470 SER B 146 CB OG REMARK 470 ASN B 147 CB CG OD1 ND2 REMARK 470 LYS B 157 CD CE NZ REMARK 470 SER B 181 CB OG REMARK 470 GLN B 182 CB CG CD OE1 NE2 REMARK 470 LYS B 191 CE NZ REMARK 470 ASP B 233 CB CG OD1 OD2 REMARK 470 LYS B 235 CB CG CD CE NZ REMARK 470 LYS B 251 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2052 O HOH B 2065 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 227 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 53.44 -111.25 REMARK 500 THR A 142 -15.12 -159.80 REMARK 500 PHE A 183 -129.49 -90.27 REMARK 500 ALA A 184 -35.83 61.08 REMARK 500 ALA A 200 122.69 -173.47 REMARK 500 THR B 142 -36.38 174.95 REMARK 500 GLN B 182 -33.52 -37.06 REMARK 500 PHE B 183 -131.39 -101.61 REMARK 500 ALA B 184 -62.77 58.20 REMARK 500 ALA B 200 125.95 -174.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2019 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH B2020 DISTANCE = 7.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A1003 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GOL A1004 O1 REMARK 620 2 VO4 A1003 O1 59.7 REMARK 620 3 VO4 A1003 O2 155.9 105.6 REMARK 620 4 VO4 A1003 O3 90.8 114.5 113.3 REMARK 620 5 VO4 A1003 O4 72.9 113.9 99.7 109.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 B1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE V4O A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G24 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF EXOENZYME C3 FROM CLOSTRIDIUMBOTULINUM REMARK 900 RELATED ID: 1GZE RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (L177C MUTANT) REMARK 900 RELATED ID: 1GZF RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (WILD-TYPE) IN REMARK 900 COMPLEX WITH NAD DBREF 1UZI A 41 251 UNP P15879 ARC3_CBDP 41 251 DBREF 1UZI B 41 251 UNP P15879 ARC3_CBDP 41 251 SEQRES 1 A 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 A 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 A 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 A 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 A 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 A 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 A 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 A 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 A 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 A 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 A 211 GLY TYR ILE SER THR SER LEU MET ASN VAL SER GLN PHE SEQRES 12 A 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 A 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 A 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 A 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 A 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 A 211 ASN PRO LYS SEQRES 1 B 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 B 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 B 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 B 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 B 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 B 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 B 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 B 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 B 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 B 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 B 211 GLY TYR ILE SER THR SER LEU MET ASN VAL SER GLN PHE SEQRES 12 B 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 B 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 B 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 B 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 B 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 B 211 ASN PRO LYS HET V4O A1001 16 HET VO4 A1002 5 HET VO4 A1003 5 HET GOL A1004 6 HET GOL A1005 6 HET VO4 B1002 5 HETNAM V4O CYCLO-TETRAMETAVANADATE HETNAM VO4 VANADATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 V4O O12 V4 4- FORMUL 4 VO4 3(O4 V 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 HOH *308(H2 O) HELIX 1 1 ASN A 51 GLY A 67 1 17 HELIX 2 2 SER A 69 SER A 82 1 14 HELIX 3 3 SER A 82 ASN A 93 1 12 HELIX 4 4 PRO A 101 PHE A 115 1 15 HELIX 5 5 ASN A 116 MET A 118 5 3 HELIX 6 6 ASP A 131 GLY A 136 5 6 HELIX 7 7 GLY A 136 GLN A 140 5 5 HELIX 8 8 ASN A 151 LEU A 163 1 13 HELIX 9 9 ASN B 51 LYS B 65 1 15 HELIX 10 10 SER B 69 SER B 82 1 14 HELIX 11 11 SER B 82 ASN B 93 1 12 HELIX 12 12 PRO B 101 PHE B 115 1 15 HELIX 13 13 ASP B 131 GLY B 136 5 6 HELIX 14 14 GLY B 136 GLN B 140 5 5 HELIX 15 15 ASN B 151 LEU B 163 1 13 SHEET 1 AA 5 ILE A 124 ASP A 130 0 SHEET 2 AA 5 ILE A 188 VAL A 194 -1 O ILE A 188 N ASP A 130 SHEET 3 AA 5 ILE A 237 THR A 246 1 O ILE A 237 N ILE A 189 SHEET 4 AA 5 SER A 221 LEU A 230 -1 O THR A 222 N MET A 244 SHEET 5 AA 5 ASP A 166 GLU A 169 -1 O ARG A 167 N TYR A 223 SHEET 1 AB 3 ILE A 173 SER A 176 0 SHEET 2 AB 3 GLU A 214 LEU A 217 -1 O MET A 215 N THR A 175 SHEET 3 AB 3 GLY A 201 TYR A 202 -1 O GLY A 201 N LEU A 216 SHEET 1 BA 5 ILE B 124 ASP B 130 0 SHEET 2 BA 5 ILE B 188 VAL B 194 -1 O ILE B 188 N ASP B 130 SHEET 3 BA 5 ILE B 237 THR B 246 1 O ILE B 237 N ILE B 189 SHEET 4 BA 5 SER B 221 LEU B 230 -1 O THR B 222 N MET B 244 SHEET 5 BA 5 ASP B 166 GLU B 169 -1 O ARG B 167 N TYR B 223 SHEET 1 BB 3 ILE B 173 SER B 176 0 SHEET 2 BB 3 GLU B 214 LEU B 217 -1 O MET B 215 N THR B 175 SHEET 3 BB 3 GLY B 201 TYR B 202 -1 O GLY B 201 N LEU B 216 LINK V VO4 A1003 O1 GOL A1004 1555 1555 2.97 SITE 1 AC1 6 LYS A 81 PRO A 101 SER A 102 HOH A2153 SITE 2 AC1 6 HOH A2154 HOH A2155 SITE 1 AC2 8 SER A 69 LYS A 70 SER A 71 GOL A1004 SITE 2 AC2 8 GOL A1005 SER B 69 LYS B 70 SER B 71 SITE 1 AC3 6 LYS B 81 PRO B 101 SER B 102 HOH B2150 SITE 2 AC3 6 HOH B2151 HOH B2152 SITE 1 AC4 9 ASN A 145 ILE A 150 ASN A 151 LYS A 152 SITE 2 AC4 9 THR A 153 ASN B 145 ILE B 150 ASN B 151 SITE 3 AC4 9 LYS B 152 SITE 1 AC5 4 SER A 69 SER A 71 VO4 A1003 LYS B 70 SITE 1 AC6 4 LYS A 70 VO4 A1003 SER B 69 SER B 71 CRYST1 73.293 73.293 218.233 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004582 0.00000 MTRIX1 1 1.000000 0.000267 -0.000458 0.02600 1 MTRIX2 1 0.000000 -1.000000 0.000453 73.31000 1 MTRIX3 1 -0.000458 -0.000454 -1.000000 61.53100 1