HEADER TRANSPORT PROTEIN 18-MAR-04 1UZX TITLE A COMPLEX OF THE VPS23 UEV WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UEV DOMAIN, RESIDUES 1-161; COMPND 5 SYNONYM: VPS23, STP22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UBIQUITIN; COMPND 9 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPCH; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: BOVINE; SOURCE 13 ORGANISM_TAXID: 9913 KEYWDS TRANSPORT PROTEIN, TRANSPORT PROTEIN-COMPLEX, UEV, E2 VARIANT, KEYWDS 2 UBQUITIN, ESCRT-I, VPS23, MVB SORTING, NUCLEAR PROTEIN, POLYPROTEIN, KEYWDS 3 TRANSPORT; PROTEIN TRANSPORT; UBL CONJUGATION PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR H.TEO,R.L.WILLIAMS REVDAT 4 05-JUL-17 1UZX 1 REMARK REVDAT 3 24-FEB-09 1UZX 1 VERSN REVDAT 2 01-JUL-04 1UZX 1 JRNL REVDAT 1 30-MAR-04 1UZX 0 JRNL AUTH H.TEO,D.VEPRINTSEV,R.L.WILLIAMS JRNL TITL STRUCTURAL INSIGHTS INTO ENDOSOMAL SORTING COMPLEX REQUIRED JRNL TITL 2 FOR TRANSPORT (ESCRT-I) RECOGNITION OF UBIQUITINATED JRNL TITL 3 PROTEINS JRNL REF J.BIOL.CHEM. V. 279 28689 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15044434 JRNL DOI 10.1074/JBC.M400023200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1264379.060 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 43667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2234 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6352 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 370 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.26000 REMARK 3 B22 (A**2) : 1.84000 REMARK 3 B33 (A**2) : -5.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.040 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.880 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.030 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.840 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.170 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 40.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : MYPROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : MES.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : MYPROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23553 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.070 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.71 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB, SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.1M MES PH 6.5, 0.2M REMARK 280 (NH4)2SO4, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.46700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.66650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.01600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.66650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.46700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.01600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE UEV DOMAIN IS REQUIRED FOR THE REMARK 300 INTERACTION OF THECOMPLEX WITH UBIQUITIN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ESCRT-I COMPLEX IS REQUIRED FOR SORTING CARGO INTO REMARK 400 MVB VESICLES. REQUIRED FOR VACUOLAR TARGETING OF TEMPERATURE- REMARK 400 SENSITIVE PLASMA MEMBRANE PROTEINS STE2 AND CAN1. REMARK 400 UBIQUITIN IS INVOLVED IN THE ATP-DEPENDENT SELECTIVE DEGRADATION OF REMARK 400 CELLULAR PROTEINS AND RIBOSOME BIOGENESIS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 ILE A 7 REMARK 465 GLU A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 75 REMARK 465 SER A 76 REMARK 465 SER A 77 REMARK 465 PRO A 78 REMARK 465 HIS A 79 REMARK 465 ILE A 110 REMARK 465 SER A 111 REMARK 465 SER A 112 REMARK 465 SER A 113 REMARK 465 ALA A 160 REMARK 465 PRO A 161 REMARK 465 GLY B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 159 CA C O CB CG CD OE1 REMARK 470 GLN A 159 NE2 REMARK 470 GLY B 75 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 78.27 -115.82 REMARK 500 MSE A 107 -24.03 -32.04 REMARK 500 CYS A 133 62.14 -116.29 REMARK 500 PRO A 136 3.50 -58.29 REMARK 500 GLN A 157 -87.60 -70.05 REMARK 500 THR B 9 24.95 -77.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 25 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1075 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A1160 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AAR RELATED DB: PDB REMARK 900 DI-UBIQUITIN REMARK 900 RELATED ID: 1C3T RELATED DB: PDB REMARK 900 ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURALSPECIFICITY REMARK 900 RELATED ID: 1CMX RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THE SPECIFICITY OF UBIQUITIN C- TERMINAL REMARK 900 HYDROLASES REMARK 900 RELATED ID: 1D3Z RELATED DB: PDB REMARK 900 UBIQUITIN NMR STRUCTURE REMARK 900 RELATED ID: 1F9J RELATED DB: PDB REMARK 900 STRUCTURE OF A NEW CRYSTAL FORM OF TETRAUBIQUITIN REMARK 900 RELATED ID: 1FXT RELATED DB: PDB REMARK 900 STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTERCOMPLEX REMARK 900 RELATED ID: 1G6J RELATED DB: PDB REMARK 900 STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSEMICELLES REMARK 900 RELATED ID: 1GJZ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A DIMERIC N-TERMINAL FRAGMENT OF HUMAN REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 1NBF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A UBP-FAMILY DEUBIQUITINATING ENZYMEIN REMARK 900 ISOLATION AND IN COMPLEX WITH UBIQUITIN ALDEHYDE REMARK 900 RELATED ID: 1OGW RELATED DB: PDB REMARK 900 SYNTHETIC UBIQUITIN WITH FLUORO-LEU AT 50 AND 67 REMARK 900 RELATED ID: 1P3Q RELATED DB: PDB REMARK 900 MECHANISM OF UBIQUITIN RECOGNITION BY THE CUE DOMAIN OF VPS9 REMARK 900 RELATED ID: 1TBE RELATED DB: PDB REMARK 900 TETRAUBIQUITIN REMARK 900 RELATED ID: 1UBI RELATED DB: PDB REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 1UD7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF REMARK 900 UBIQUITIN, 1D7 DBREF 1UZX A -8 -1 PDB 1UZX 1UZX -8 -1 DBREF 1UZX A 1 161 UNP P25604 ST22_YEAST 1 161 DBREF 1UZX B 1 76 UNP P02248 UBIQ_HUMAN 1 76 SEQRES 1 A 169 MET ALA HIS HIS HIS HIS HIS HIS MET SER ALA ASN GLY SEQRES 2 A 169 LYS ILE SER VAL PRO GLU ALA VAL VAL ASN TRP LEU PHE SEQRES 3 A 169 LYS VAL ILE GLN PRO ILE TYR ASN ASP GLY ARG THR THR SEQRES 4 A 169 PHE HIS ASP SER LEU ALA LEU LEU ASP ASN PHE HIS SER SEQRES 5 A 169 LEU ARG PRO ARG THR ARG VAL PHE THR HIS SER ASP GLY SEQRES 6 A 169 THR PRO GLN LEU LEU LEU SER ILE TYR GLY THR ILE SER SEQRES 7 A 169 THR GLY GLU ASP GLY SER SER PRO HIS SER ILE PRO VAL SEQRES 8 A 169 ILE MSE TRP VAL PRO SER MSO TYR PRO VAL LYS PRO PRO SEQRES 9 A 169 PHE ILE SER ILE ASN LEU GLU ASN PHE ASP MSE ASN THR SEQRES 10 A 169 ILE SER SER SER LEU PRO ILE GLN GLU TYR ILE ASP SER SEQRES 11 A 169 ASN GLY TRP ILE ALA LEU PRO ILE LEU HIS CYS TRP ASP SEQRES 12 A 169 PRO ALA ALA MSE ASN LEU ILE MSE VAL VAL GLN GLU LEU SEQRES 13 A 169 MSE SER LEU LEU HIS GLU PRO PRO GLN ASP GLN ALA PRO SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MODRES 1UZX MSE A 85 MET SELENOMETHIONINE MODRES 1UZX MSO A 90 MET SELENOMETHIONINE SELENOXIDE MODRES 1UZX MSE A 107 MET SELENOMETHIONINE MODRES 1UZX MSE A 139 MET SELENOMETHIONINE MODRES 1UZX MSE A 143 MET SELENOMETHIONINE MODRES 1UZX MSE A 149 MET SELENOMETHIONINE HET MSE A 85 8 HET MSO A 90 9 HET MSE A 107 8 HET MSE A 139 8 HET MSE A 143 8 HET MSE A 149 8 HET MES A1160 12 HET SO4 B1075 5 HETNAM MSE SELENOMETHIONINE HETNAM MSO SELENOMETHIONINE SELENOXIDE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SO4 SULFATE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 1 MSO C5 H11 N O3 SE FORMUL 3 MES C6 H13 N O4 S FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *126(H2 O) HELIX 1 1 PRO A 10 TYR A 25 1 16 HELIX 2 2 ASP A 27 PHE A 42 1 16 HELIX 3 3 LEU A 114 TYR A 119 5 6 HELIX 4 4 LEU A 128 CYS A 133 1 6 HELIX 5 5 ASN A 140 SER A 150 1 11 HELIX 6 6 LEU A 151 GLU A 154 5 4 HELIX 7 7 THR B 22 GLY B 35 1 14 HELIX 8 8 PRO B 37 ASP B 39 5 3 HELIX 9 9 LEU B 56 ASN B 60 5 5 SHEET 1 AA 4 LEU A 45 THR A 53 0 SHEET 2 AA 4 PRO A 59 ILE A 69 -1 O GLN A 60 N PHE A 52 SHEET 3 AA 4 ILE A 81 TRP A 86 -1 O ILE A 81 N ILE A 69 SHEET 4 AA 4 PHE A 97 ILE A 100 -1 O PHE A 97 N TRP A 86 SHEET 1 BA 5 THR B 12 GLU B 16 0 SHEET 2 BA 5 GLN B 2 LYS B 6 -1 O ILE B 3 N LEU B 15 SHEET 3 BA 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 BA 5 GLN B 41 PHE B 45 -1 O ARG B 42 N VAL B 70 SHEET 5 BA 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK C ILE A 84 N MSE A 85 1555 1555 1.32 LINK C MSE A 85 N TRP A 86 1555 1555 1.33 LINK C SER A 89 N MSO A 90 1555 1555 1.33 LINK C MSO A 90 N TYR A 91 1555 1555 1.33 LINK C ASP A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ASN A 108 1555 1555 1.33 LINK C ALA A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ASN A 140 1555 1555 1.33 LINK C ILE A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N VAL A 144 1555 1555 1.33 LINK C LEU A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N SER A 150 1555 1555 1.33 CISPEP 1 TYR A 91 PRO A 92 0 0.05 SITE 1 AC1 4 ARG B 42 GLN B 49 ARG B 72 ARG B 74 SITE 1 AC2 6 HIS A 54 PRO A 88 LYS A 94 PHE A 97 SITE 2 AC2 6 TRP A 125 HOH A2062 CRYST1 58.934 66.032 69.333 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014423 0.00000