HEADER DNA BINDING PROTEIN 24-MAR-04 1V06 TITLE AXH DOMAIN OF THE TRANSCRIPTION FACTOR HBP1 FROM M.MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG BOX-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AXH DOMAIN, RESIDUES 208-345; COMPND 5 SYNONYM: HBP1, HMG-BOX CONTAINING PROTEIN-1, HMG BOX TRANSCRIPTION COMPND 6 FACTOR 1, HIGH MOBILITY GROUP BOX TRANSCRIPTION FACTOR 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS DNA-BINDING PROTEIN, TRANSCRIPTION FACTOR, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, NUCLEIC ACID BINDING, OB-FOLD, ATAXIN-1 HOMOLOGOUS, KEYWDS 3 REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, WNT SIGNALING KEYWDS 4 PATHWAY, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.DE CHIARA,G.KELLY,A.PASTORE REVDAT 3 15-MAY-24 1V06 1 REMARK REVDAT 2 24-FEB-09 1V06 1 VERSN REVDAT 1 21-APR-05 1V06 0 JRNL AUTH C.DE CHIARA,R.P.MENON,S.ADINOLFI,J.DE BOER,E.KTISTAKI, JRNL AUTH 2 G.KELLY,L.CALDER,D.KIOUSSIS,A.PASTORE JRNL TITL THE AXH DOMAIN ADOPTS ALTERNATIVE FOLDS THE SOLUTION JRNL TITL 2 STRUCTURE OF HBP1 AXH. JRNL REF STRUCTURE V. 13 743 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 15893665 JRNL DOI 10.1016/J.STR.2005.02.016 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.DE CHIARA,G.KELLY,T.A.FRANKIEL,A.PASTORE REMARK 1 TITL ASSIGNMENT OF THE 1H,13C, AND 15N RESONANCES OF THE AXH REMARK 1 TITL 2 DOMAIN OF THE TRANSCRIPTION FACTOR HBP1 REMARK 1 REF J.BIOMOL.NMR V. 28 411 2004 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 14872137 REMARK 1 DOI 10.1023/B:JNMR.0000015367.92295.0F REMARK 1 REFERENCE 2 REMARK 1 AUTH C.DE CHIARA,C.GIANNINI,S.ADINOLFI,J.DEBOER,S.GUIDA,A.RAMOS, REMARK 1 AUTH 2 C.JODICE,D.KIOUSSIS,A.PASTORE REMARK 1 TITL THE AXH MODULE:AN INDEPENDENTLY FOLDED DOMAIN COMMON TO REMARK 1 TITL 2 ATAXIN-1 AND HBP1 REMARK 1 REF FEBS LETT. V. 551 107 2003 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 12965213 REMARK 1 DOI 10.1016/S0014-5793(03)00818-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : NILGES, BRUNGER ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE EXPERIMENTALLY DETERMINED DISTANCE REMARK 3 AND DIHEDRAL ANGLE RESTRAINTS WERE APPLIED IN A MIXED TORSION REMARK 3 AND CARTESIAN DYNAMICS SIMULATED ANNEALING PROTOCOL. THE FINAL REMARK 3 STRUCTURE ENSEMBLE WAS REFINED IN A SHELL OF WATER MOLECULES REMARK 4 REMARK 4 1V06 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014821. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 10 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM 15N- OR 15N, 13C-LABELED REMARK 210 PROTEIN, 20 MM TRIS-HCL, 10 MM REMARK 210 NACL, 2 MM BETA-MERCAPTOETHANOL, REMARK 210 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE RESONANCE; NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XEASY 1.2, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURAL RESTRAINTS WERE DERIVED FROM 13C- AND 15N REMARK 210 -EDITED NOESY EXPERIMENTS AND J-COUPLINGS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 204 REMARK 465 ALA A 205 REMARK 465 MET A 206 REMARK 465 ALA A 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 213 -138.43 58.62 REMARK 500 1 CYS A 214 37.18 -98.61 REMARK 500 1 ASN A 245 124.30 -179.12 REMARK 500 1 ILE A 249 -62.51 -121.99 REMARK 500 1 HIS A 254 147.56 -173.23 REMARK 500 1 LYS A 255 38.33 -78.31 REMARK 500 1 ASN A 306 -17.13 78.95 REMARK 500 2 HIS A 213 -136.53 54.54 REMARK 500 2 ASP A 244 -169.18 -106.85 REMARK 500 2 ASN A 245 72.83 -68.12 REMARK 500 2 GLU A 246 51.51 -93.99 REMARK 500 2 GLN A 250 81.41 -66.54 REMARK 500 2 MET A 251 46.79 -157.88 REMARK 500 2 LYS A 255 42.42 -87.81 REMARK 500 2 ASN A 306 -1.45 77.95 REMARK 500 2 ASN A 344 52.80 -117.54 REMARK 500 3 HIS A 213 -144.99 55.68 REMARK 500 3 CYS A 214 44.74 -94.79 REMARK 500 3 GLU A 226 -95.05 -145.27 REMARK 500 3 ASN A 245 42.14 -170.14 REMARK 500 3 GLU A 246 45.49 -86.68 REMARK 500 3 GLN A 250 -64.91 -93.35 REMARK 500 3 MET A 251 -70.49 -168.12 REMARK 500 3 LYS A 255 41.14 -75.12 REMARK 500 3 LEU A 264 97.75 -65.36 REMARK 500 3 PHE A 273 19.34 52.29 REMARK 500 3 ASN A 306 -33.36 76.27 REMARK 500 3 ASN A 344 73.93 -114.41 REMARK 500 4 HIS A 213 -135.01 55.15 REMARK 500 4 GLN A 250 -51.42 177.76 REMARK 500 4 LYS A 255 37.67 -85.67 REMARK 500 4 LEU A 264 95.35 -65.97 REMARK 500 4 ASN A 306 -23.08 77.64 REMARK 500 4 ASN A 344 42.52 -107.04 REMARK 500 5 HIS A 213 -139.46 57.19 REMARK 500 5 CYS A 214 36.74 -97.50 REMARK 500 5 THR A 253 -80.14 -66.74 REMARK 500 5 HIS A 254 93.05 64.10 REMARK 500 5 ASN A 306 -5.21 76.81 REMARK 500 6 HIS A 213 -142.42 57.50 REMARK 500 6 CYS A 214 37.29 -96.98 REMARK 500 6 SER A 227 32.09 -84.65 REMARK 500 6 ASN A 245 47.84 -176.37 REMARK 500 6 GLU A 246 38.72 -81.15 REMARK 500 6 LYS A 255 39.52 -67.34 REMARK 500 6 ASN A 306 -6.45 76.61 REMARK 500 7 HIS A 213 -136.09 55.53 REMARK 500 7 ILE A 249 -62.22 -101.21 REMARK 500 7 GLN A 250 -68.00 -145.24 REMARK 500 7 THR A 253 30.18 -99.02 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FOLLOWING N-TERMINAL RESIDUES FROM THE EXPRESSION SYSTEM REMARK 999 TAG WERE NOT LOCATED IN THE EXPERIMENT: GLY ALA MET ALA DBREF 1V06 A 204 207 PDB 1V06 1V06 204 207 DBREF 1V06 A 208 345 UNP Q8R316 Q8R316 208 345 SEQRES 1 A 142 GLY ALA MET ALA PRO SER THR ILE TRP HIS CYS PHE LEU SEQRES 2 A 142 LYS GLY THR ARG LEU CYS PHE HIS LYS GLU SER ASN LYS SEQRES 3 A 142 GLU TRP GLN ASP VAL GLU ASP PHE ALA ARG ALA ALA SER SEQRES 4 A 142 CYS ASP ASN GLU GLU GLU ILE GLN MET GLY THR HIS LYS SEQRES 5 A 142 GLY TYR GLY SER ASP GLY LEU LYS LEU LEU SER HIS GLU SEQRES 6 A 142 GLU SER VAL SER PHE GLY GLU SER VAL LEU LYS LEU THR SEQRES 7 A 142 PHE ASP PRO GLY THR VAL GLU ASP GLY LEU LEU THR VAL SEQRES 8 A 142 GLU CYS LYS LEU ASP HIS PRO PHE TYR VAL LYS ASN LYS SEQRES 9 A 142 GLY TRP SER SER PHE TYR PRO SER LEU THR VAL VAL GLN SEQRES 10 A 142 HIS GLY ILE PRO CYS CYS GLU ILE HIS ILE GLY ASP VAL SEQRES 11 A 142 CYS LEU PRO PRO GLY HIS PRO ASP ALA ILE ASN PHE HELIX 1 1 VAL A 234 ALA A 241 1 8 HELIX 2 2 THR A 286 GLY A 290 5 5 HELIX 3 3 TYR A 313 GLY A 322 1 10 SHEET 1 AA 6 GLN A 232 ASP A 233 0 SHEET 2 AA 6 ARG A 220 PHE A 223 -1 O LEU A 221 N GLN A 232 SHEET 3 AA 6 LEU A 292 CYS A 296 -1 O THR A 293 N CYS A 222 SHEET 4 AA 6 GLU A 275 ASP A 283 -1 O LEU A 278 N CYS A 296 SHEET 5 AA 6 LEU A 262 SER A 272 -1 O LYS A 263 N ASP A 283 SHEET 6 AA 6 VAL A 333 CYS A 334 -1 O CYS A 334 N LEU A 262 SHEET 1 AB 3 PHE A 302 VAL A 304 0 SHEET 2 AB 3 GLY A 308 SER A 311 -1 O GLY A 308 N VAL A 304 SHEET 3 AB 3 CYS A 326 GLU A 327 1 O CYS A 326 N SER A 311 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1