HEADER DNA-BINDING PROTEIN 24-MAR-04 1V06 TITLE AXH DOMAIN OF THE TRANSCRIPTION FACTOR HBP1 FROM M.MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG BOX-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AXH DOMAIN, RESIDUES 208-345; COMPND 5 SYNONYM: HBP1, HMG-BOX CONTAINING PROTEIN-1, HMG BOX COMPND 6 TRANSCRIPTION FACTOR 1, HIGH MOBILITY GROUP BOX COMPND 7 TRANSCRIPTION FACTOR 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS DNA-BINDING PROTEIN, TRANSCRIPTION FACTOR, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, NUCLEIC ACID BINDING, OB-FOLD, ATAXIN-1 KEYWDS 3 HOMOLOGOUS, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, WNT SIGNALING PATHWAY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.DE CHIARA,G.KELLY,A.PASTORE REVDAT 2 24-FEB-09 1V06 1 VERSN REVDAT 1 21-APR-05 1V06 0 JRNL AUTH C.DE CHIARA,R.P.MENON,S.ADINOLFI,J.DE BOER, JRNL AUTH 2 E.KTISTAKI,G.KELLY,L.CALDER,D.KIOUSSIS,A.PASTORE JRNL TITL THE AXH DOMAIN ADOPTS ALTERNATIVE FOLDS THE JRNL TITL 2 SOLUTION STRUCTURE OF HBP1 AXH. JRNL REF STRUCTURE V. 13 743 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 15893665 JRNL DOI 10.1016/J.STR.2005.02.016 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.DE CHIARA,G.KELLY,T.A.FRANKIEL,A.PASTORE REMARK 1 TITL ASSIGNMENT OF THE 1H,13C, AND 15N RESONANCES OF REMARK 1 TITL 2 THE AXH DOMAIN OF THE TRANSCRIPTION FACTOR HBP1 REMARK 1 REF J.BIOMOL.NMR V. 28 411 2004 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 14872137 REMARK 1 DOI 10.1023/B:JNMR.0000015367.92295.0F REMARK 1 REFERENCE 2 REMARK 1 AUTH C.DE CHIARA,C.GIANNINI,S.ADINOLFI,J.DEBOER,S.GUIDA, REMARK 1 AUTH 2 A.RAMOS,C.JODICE,D.KIOUSSIS,A.PASTORE REMARK 1 TITL THE AXH MODULE:AN INDEPENDENTLY FOLDED DOMAIN REMARK 1 TITL 2 COMMON TO ATAXIN-1 AND HBP1 REMARK 1 REF FEBS LETT. V. 551 107 2003 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 12965213 REMARK 1 DOI 10.1016/S0014-5793(03)00818-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : NILGES, BRUNGER ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE EXPERIMENTALLY DETERMINED REMARK 3 DISTANCE AND DIHEDRAL ANGLE RESTRAINTS WERE APPLIED IN A MIXED REMARK 3 TORSION AND CARTESIAN DYNAMICS SIMULATED ANNEALING PROTOCOL. REMARK 3 THE FINAL STRUCTURE ENSEMBLE WAS REFINED IN A SHELL OF WATER REMARK 3 MOLECULES REMARK 4 REMARK 4 1V06 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-04. REMARK 100 THE PDBE ID CODE IS EBI-14821. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 10 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM 15N- OR 15N, REMARK 210 13C-LABELED PROTEIN, REMARK 210 20 MM TRIS-HCL, 10 MM NACL, REMARK 210 2 MM BETA-MERCAPTOETHANOL, REMARK 210 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE RESONANCE, NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 ; 800 REMARK 210 SPECTROMETER MODEL : INOVA ; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN ; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XEASY 1.2, REMARK 210 ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURAL RESTRAINTS WERE DERIVED FROM 13C- AND REMARK 210 15N-EDITED NOESY EXPERIMENTS AND J-COUPLINGS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 204 REMARK 465 ALA A 205 REMARK 465 MET A 206 REMARK 465 ALA A 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 213 -138.43 58.62 REMARK 500 1 CYS A 214 37.18 -98.61 REMARK 500 1 ASN A 245 124.30 -179.12 REMARK 500 1 ILE A 249 -62.51 -121.99 REMARK 500 1 HIS A 254 147.56 -173.23 REMARK 500 1 ASN A 306 -17.13 78.95 REMARK 500 2 HIS A 213 -136.53 54.54 REMARK 500 2 ASP A 244 -169.18 -106.86 REMARK 500 2 ASN A 245 72.83 -68.12 REMARK 500 2 GLU A 246 51.51 -93.99 REMARK 500 2 GLN A 250 81.41 -66.54 REMARK 500 2 ASN A 306 -1.45 77.95 REMARK 500 2 ASN A 344 52.80 -117.54 REMARK 500 3 HIS A 213 -144.99 55.68 REMARK 500 3 CYS A 214 44.74 -94.79 REMARK 500 3 GLU A 226 -95.05 -145.27 REMARK 500 3 ASN A 245 42.14 -170.14 REMARK 500 3 GLU A 246 45.49 -86.68 REMARK 500 3 GLN A 250 -64.91 -93.35 REMARK 500 3 LEU A 264 97.75 -65.36 REMARK 500 3 ASN A 306 -33.36 76.27 REMARK 500 3 ASN A 344 73.93 -114.41 REMARK 500 4 HIS A 213 -135.01 55.15 REMARK 500 4 GLN A 250 -51.42 177.76 REMARK 500 4 LEU A 264 95.35 -65.97 REMARK 500 4 ASN A 306 -23.08 77.64 REMARK 500 4 ASN A 344 42.52 -107.04 REMARK 500 5 HIS A 213 -139.46 57.19 REMARK 500 5 CYS A 214 36.74 -97.50 REMARK 500 5 THR A 253 -80.14 -66.74 REMARK 500 5 HIS A 254 93.05 64.10 REMARK 500 5 ASN A 306 -5.21 76.81 REMARK 500 6 HIS A 213 -142.42 57.50 REMARK 500 6 CYS A 214 37.29 -96.98 REMARK 500 6 SER A 227 32.09 -84.65 REMARK 500 6 ASN A 245 47.84 -176.37 REMARK 500 6 GLU A 246 38.72 -81.15 REMARK 500 6 ASN A 306 -6.45 76.61 REMARK 500 7 HIS A 213 -136.09 55.53 REMARK 500 7 ILE A 249 -62.22 -101.21 REMARK 500 7 GLN A 250 -68.00 -145.24 REMARK 500 7 THR A 253 30.18 -99.02 REMARK 500 7 LEU A 264 107.57 -58.69 REMARK 500 8 HIS A 213 -139.15 56.86 REMARK 500 8 CYS A 214 40.05 -98.96 REMARK 500 8 SER A 227 30.07 -88.75 REMARK 500 8 ASN A 228 67.99 -104.02 REMARK 500 8 SER A 242 -70.81 -38.54 REMARK 500 8 ASP A 244 -31.25 178.57 REMARK 500 8 GLN A 250 -47.95 -139.08 REMARK 500 8 ASP A 299 31.34 -87.37 REMARK 500 8 ASN A 344 43.74 -109.65 REMARK 500 9 HIS A 213 -135.75 55.23 REMARK 500 9 ASP A 244 36.21 -82.87 REMARK 500 9 ASN A 245 -36.26 -139.66 REMARK 500 9 HIS A 254 130.38 176.27 REMARK 500 9 ASN A 306 -8.68 77.10 REMARK 500 9 ASN A 344 31.57 -99.57 REMARK 500 10 HIS A 213 -146.56 59.06 REMARK 500 10 CYS A 214 39.82 -94.64 REMARK 500 10 ASP A 244 -160.92 178.52 REMARK 500 10 GLU A 246 30.06 -140.50 REMARK 500 10 THR A 253 -79.83 -95.52 REMARK 500 10 HIS A 254 141.64 74.22 REMARK 500 10 TYR A 313 74.22 -119.67 REMARK 500 11 HIS A 213 -139.26 55.83 REMARK 500 11 CYS A 214 42.69 -100.40 REMARK 500 11 GLU A 226 -156.50 -105.78 REMARK 500 11 CYS A 243 -80.65 -76.43 REMARK 500 11 ASP A 244 -33.71 177.05 REMARK 500 11 ASN A 245 128.59 177.54 REMARK 500 11 GLU A 246 50.09 -95.12 REMARK 500 11 GLN A 250 -62.46 -150.01 REMARK 500 11 THR A 253 38.36 -160.47 REMARK 500 11 ALA A 342 91.73 -69.00 REMARK 500 12 HIS A 213 -139.22 55.94 REMARK 500 12 CYS A 214 40.09 -99.80 REMARK 500 12 GLU A 246 44.90 -89.13 REMARK 500 12 GLN A 250 -56.31 -178.76 REMARK 500 12 ASN A 306 -26.39 81.45 REMARK 500 13 HIS A 213 -137.40 56.43 REMARK 500 13 GLU A 226 -165.06 -101.62 REMARK 500 13 ASN A 228 43.57 -82.03 REMARK 500 13 GLU A 246 47.32 -83.22 REMARK 500 13 GLN A 250 -56.91 -166.42 REMARK 500 13 LEU A 264 107.21 -59.46 REMARK 500 13 ASN A 344 62.51 -114.56 REMARK 500 14 HIS A 213 -151.51 57.83 REMARK 500 14 CYS A 214 46.36 -88.37 REMARK 500 14 SER A 227 49.51 -93.74 REMARK 500 14 GLN A 250 -61.73 -133.72 REMARK 500 14 THR A 253 -66.56 -98.98 REMARK 500 14 HIS A 254 91.07 53.64 REMARK 500 14 ASN A 344 53.43 -110.56 REMARK 500 15 HIS A 213 -141.04 53.53 REMARK 500 15 CYS A 214 38.68 -98.40 REMARK 500 15 GLU A 226 -101.92 -126.85 REMARK 500 15 ASN A 228 38.76 -80.80 REMARK 500 15 ASN A 306 -2.79 76.85 REMARK 500 16 HIS A 213 -149.59 59.74 REMARK 500 16 CYS A 214 36.15 -90.68 REMARK 500 16 SER A 227 41.03 -88.47 REMARK 500 16 ASN A 245 133.72 176.03 REMARK 500 16 GLU A 246 43.41 -105.80 REMARK 500 16 GLN A 250 -58.09 -174.80 REMARK 500 16 THR A 253 -92.25 -80.56 REMARK 500 16 HIS A 254 109.17 69.12 REMARK 500 17 HIS A 213 -138.54 60.94 REMARK 500 17 CYS A 214 32.38 -95.40 REMARK 500 17 SER A 242 -177.98 178.76 REMARK 500 17 ASP A 244 -28.90 179.52 REMARK 500 17 ASN A 245 91.48 -165.98 REMARK 500 17 GLN A 250 -85.05 -131.99 REMARK 500 17 ASN A 306 -6.84 75.72 REMARK 500 17 ASN A 344 74.02 -107.97 REMARK 500 18 HIS A 213 -149.67 57.63 REMARK 500 18 CYS A 214 43.75 -88.61 REMARK 500 18 GLU A 226 -168.21 -110.69 REMARK 500 18 SER A 227 42.45 -82.67 REMARK 500 18 ASN A 245 -68.67 -136.11 REMARK 500 18 GLU A 246 18.61 -154.68 REMARK 500 18 GLN A 250 164.66 179.49 REMARK 500 18 THR A 253 -77.51 -153.03 REMARK 500 18 HIS A 254 114.64 65.12 REMARK 500 18 ASN A 306 -1.95 78.08 REMARK 500 19 HIS A 213 -137.54 53.10 REMARK 500 19 SER A 227 31.08 -82.18 REMARK 500 19 ASP A 244 -177.73 178.52 REMARK 500 19 ASN A 245 70.46 -106.44 REMARK 500 19 GLN A 250 74.58 -64.22 REMARK 500 19 HIS A 254 -164.25 59.85 REMARK 500 20 HIS A 213 -133.54 56.04 REMARK 500 20 SER A 242 -145.84 178.18 REMARK 500 20 GLU A 246 40.34 -76.05 REMARK 500 20 GLN A 250 -61.45 -168.17 REMARK 500 20 HIS A 254 76.90 -68.79 REMARK 500 20 ASN A 306 -20.04 78.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FOLLOWING N-TERMINAL RESIDUES FROM THE EXPRESSION SYSTEM REMARK 999 TAG WERE NOT LOCATED IN THE EXPERIMENT: GLY ALA MET ALA DBREF 1V06 A 204 207 PDB 1V06 1V06 204 207 DBREF 1V06 A 208 345 UNP Q8R316 Q8R316 208 345 SEQRES 1 A 142 GLY ALA MET ALA PRO SER THR ILE TRP HIS CYS PHE LEU SEQRES 2 A 142 LYS GLY THR ARG LEU CYS PHE HIS LYS GLU SER ASN LYS SEQRES 3 A 142 GLU TRP GLN ASP VAL GLU ASP PHE ALA ARG ALA ALA SER SEQRES 4 A 142 CYS ASP ASN GLU GLU GLU ILE GLN MET GLY THR HIS LYS SEQRES 5 A 142 GLY TYR GLY SER ASP GLY LEU LYS LEU LEU SER HIS GLU SEQRES 6 A 142 GLU SER VAL SER PHE GLY GLU SER VAL LEU LYS LEU THR SEQRES 7 A 142 PHE ASP PRO GLY THR VAL GLU ASP GLY LEU LEU THR VAL SEQRES 8 A 142 GLU CYS LYS LEU ASP HIS PRO PHE TYR VAL LYS ASN LYS SEQRES 9 A 142 GLY TRP SER SER PHE TYR PRO SER LEU THR VAL VAL GLN SEQRES 10 A 142 HIS GLY ILE PRO CYS CYS GLU ILE HIS ILE GLY ASP VAL SEQRES 11 A 142 CYS LEU PRO PRO GLY HIS PRO ASP ALA ILE ASN PHE HELIX 1 1 VAL A 234 ALA A 241 1 8 HELIX 2 2 THR A 286 GLY A 290 5 5 HELIX 3 3 TYR A 313 GLY A 322 1 10 SHEET 1 AA 6 GLN A 232 ASP A 233 0 SHEET 2 AA 6 ARG A 220 PHE A 223 -1 O LEU A 221 N GLN A 232 SHEET 3 AA 6 LEU A 292 CYS A 296 -1 O THR A 293 N CYS A 222 SHEET 4 AA 6 GLU A 275 ASP A 283 -1 O LEU A 278 N CYS A 296 SHEET 5 AA 6 LEU A 262 SER A 272 -1 O LYS A 263 N ASP A 283 SHEET 6 AA 6 VAL A 333 CYS A 334 -1 O CYS A 334 N LEU A 262 SHEET 1 AB 3 PHE A 302 VAL A 304 0 SHEET 2 AB 3 GLY A 308 SER A 311 -1 O GLY A 308 N VAL A 304 SHEET 3 AB 3 CYS A 326 GLU A 327 1 O CYS A 326 N SER A 311 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1