HEADER HYDROLASE 06-APR-04 1V15 TITLE CRYSTAL STRUCTURE OF THE COLICIN E9, MUTANT HIS103ALA, IN COMPLEX WITH TITLE 2 ZN+2 AND DSDNA (RESOLUTION 2.4A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLICIN E9; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 450-582; COMPND 5 EC: 3.1.21.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'; COMPND 10 CHAIN: E, F, G, H, I, J, K, L; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRC 99A (PRJ352); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS HOMING ENDONUCLEASES, COLICIN, HNH MOTIF, BETA-BETA-ALPHA METAL KEYWDS 2 MOTIF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MATE,C.KLEANTHOUS REVDAT 6 13-DEC-23 1V15 1 LINK REVDAT 5 13-JUL-11 1V15 1 VERSN REVDAT 4 24-FEB-09 1V15 1 VERSN REVDAT 3 12-AUG-04 1V15 1 JRNL REVDAT 2 07-JUL-04 1V15 1 REMARK REVDAT 1 23-JUN-04 1V15 0 JRNL AUTH M.J.MATE,C.KLEANTHOUS JRNL TITL STRUCTURE-BASED ANALYSIS OF THE METAL-DEPENDENT MECHANISM OF JRNL TITL 2 H-N-H ENDONUCLEASES JRNL REF J.BIOL.CHEM. V. 279 34763 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15190054 JRNL DOI 10.1074/JBC.M403719200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.C.KUHLMANN,A.J.POMMER,G.M.MOORE,R.JAMES,C.KLEANTHOUS REMARK 1 TITL SPECIFICITY IN PROTEIN-PROTEIN INTERACTIONS: THE STRUCTURAL REMARK 1 TITL 2 BASIS FOR DUAL RECOGNITION IN ENDONUCLEASE COLICIN-IMMUNITY REMARK 1 TITL 3 PROTEIN COMPLEXES REMARK 1 REF J.MOL.BIOL. V. 301 1163 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 10966813 REMARK 1 DOI 10.1006/JMBI.2000.3945 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3953 REMARK 3 NUCLEIC ACID ATOMS : 1168 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.00000 REMARK 3 B22 (A**2) : -1.91000 REMARK 3 B33 (A**2) : 4.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.786 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.376 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.369 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5318 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7382 ; 1.873 ; 2.232 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 6.211 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;34.278 ;24.402 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;18.267 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 764 ; 0.198 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3667 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2172 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.160 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2557 ; 0.386 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4009 ; 0.675 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3512 ; 1.032 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3373 ; 1.589 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6842 139.3545 12.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.3821 T22: -0.3337 REMARK 3 T33: 0.6858 T12: -0.1556 REMARK 3 T13: -0.0783 T23: 0.7151 REMARK 3 L TENSOR REMARK 3 L11: 8.4659 L22: 5.3566 REMARK 3 L33: 3.8868 L12: 1.5301 REMARK 3 L13: -1.2928 L23: 2.3567 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.9523 S13: 2.0961 REMARK 3 S21: -0.7762 S22: 0.2712 S23: 0.2622 REMARK 3 S31: -0.7935 S32: 0.4197 S33: -0.3133 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7391 109.2610 11.7101 REMARK 3 T TENSOR REMARK 3 T11: -0.2229 T22: 0.1443 REMARK 3 T33: -0.3683 T12: -0.1774 REMARK 3 T13: 0.0436 T23: 0.1134 REMARK 3 L TENSOR REMARK 3 L11: 10.0003 L22: 2.5495 REMARK 3 L33: 4.1547 L12: -1.7996 REMARK 3 L13: 0.0058 L23: 1.0692 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: 1.1470 S13: 0.3022 REMARK 3 S21: -0.1047 S22: 0.2007 S23: -0.5289 REMARK 3 S31: 0.1521 S32: 0.6256 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 131 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3790 82.0000 42.7462 REMARK 3 T TENSOR REMARK 3 T11: -0.2021 T22: -0.2817 REMARK 3 T33: -0.2796 T12: -0.0005 REMARK 3 T13: 0.0529 T23: 0.2519 REMARK 3 L TENSOR REMARK 3 L11: 6.2748 L22: 8.3520 REMARK 3 L33: 4.6038 L12: -2.6004 REMARK 3 L13: 2.0179 L23: -0.3079 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: -0.6330 S13: -1.4420 REMARK 3 S21: 0.5179 S22: 0.2164 S23: 0.2091 REMARK 3 S31: 0.4549 S32: 0.0000 S33: -0.3094 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 134 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2756 113.2386 42.5404 REMARK 3 T TENSOR REMARK 3 T11: -0.2153 T22: -0.0614 REMARK 3 T33: -0.2036 T12: -0.0630 REMARK 3 T13: -0.1691 T23: 0.1481 REMARK 3 L TENSOR REMARK 3 L11: 10.6162 L22: 4.4409 REMARK 3 L33: 3.8504 L12: 2.4452 REMARK 3 L13: 0.6434 L23: 0.4084 REMARK 3 S TENSOR REMARK 3 S11: -0.1419 S12: -0.6965 S13: 0.1606 REMARK 3 S21: 0.3933 S22: -0.2595 S23: -1.0315 REMARK 3 S31: -0.3994 S32: 0.4088 S33: 0.4014 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 8 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7349 128.5376 19.8311 REMARK 3 T TENSOR REMARK 3 T11: -0.0654 T22: -0.2776 REMARK 3 T33: 0.2381 T12: -0.1496 REMARK 3 T13: -0.1408 T23: 0.3119 REMARK 3 L TENSOR REMARK 3 L11: 8.9769 L22: 7.4018 REMARK 3 L33: 8.3731 L12: -4.2554 REMARK 3 L13: -2.1851 L23: 0.6632 REMARK 3 S TENSOR REMARK 3 S11: -0.2823 S12: 0.1106 S13: 1.5442 REMARK 3 S21: 0.4936 S22: 0.0002 S23: -0.5996 REMARK 3 S31: -0.4517 S32: 0.5186 S33: 0.2821 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 9 F 16 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7435 100.3148 19.3301 REMARK 3 T TENSOR REMARK 3 T11: -0.3017 T22: -0.2461 REMARK 3 T33: -0.3765 T12: -0.1473 REMARK 3 T13: 0.1309 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 8.9179 L22: 9.3933 REMARK 3 L33: 3.7084 L12: 4.1143 REMARK 3 L13: 3.5356 L23: 1.1976 REMARK 3 S TENSOR REMARK 3 S11: -0.1932 S12: 0.2712 S13: -0.4719 REMARK 3 S21: 0.4292 S22: -0.0348 S23: -0.4672 REMARK 3 S31: -0.0430 S32: 0.2547 S33: 0.2280 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 3 G 8 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9705 94.1458 35.4347 REMARK 3 T TENSOR REMARK 3 T11: -0.2887 T22: -0.3234 REMARK 3 T33: -0.3560 T12: -0.0518 REMARK 3 T13: 0.0659 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 8.0623 L22: 4.4257 REMARK 3 L33: 9.2597 L12: 4.7568 REMARK 3 L13: 1.9884 L23: -1.5643 REMARK 3 S TENSOR REMARK 3 S11: -0.3973 S12: 0.2757 S13: -0.9552 REMARK 3 S21: -0.4628 S22: 0.0467 S23: -1.1781 REMARK 3 S31: -0.3670 S32: 0.6447 S33: 0.3506 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 9 H 16 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0168 122.4597 35.5823 REMARK 3 T TENSOR REMARK 3 T11: -0.1408 T22: -0.3169 REMARK 3 T33: 0.0223 T12: 0.0659 REMARK 3 T13: -0.1629 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 11.3082 L22: 7.9994 REMARK 3 L33: 3.8858 L12: -0.6132 REMARK 3 L13: -2.5184 L23: -2.7837 REMARK 3 S TENSOR REMARK 3 S11: 0.1357 S12: -0.0925 S13: 1.8023 REMARK 3 S21: -0.0406 S22: -0.3460 S23: -0.1874 REMARK 3 S31: -0.6337 S32: -0.4078 S33: 0.2103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1V15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-04. REMARK 100 THE DEPOSITION ID IS D_1290014917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9645 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1EMV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.26550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.26550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.57250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.57250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.26550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.57250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.65500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.26550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.57250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.65500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D2022 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE HIS 551 ALA REMARK 400 REMARK 400 THIS PLASMID-CODED BACTERICIDAL PROTEIN IS AN REMARK 400 ENDONUCLEASE ACTIVE ON BOTH SINGLE- AND DOUBLE-STRANDED DNA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 35 REMARK 465 ASP A 36 REMARK 465 ARG A 37 REMARK 465 ILE A 38 REMARK 465 ALA A 39 REMARK 465 ASP A 40 REMARK 465 LYS A 41 REMARK 465 LEU A 42 REMARK 465 ARG A 43 REMARK 465 ASP A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 PHE A 47 REMARK 465 GLU A 66 REMARK 465 LEU A 67 REMARK 465 SER A 68 REMARK 465 LYS A 69 REMARK 465 ASN A 70 REMARK 465 LEU A 71 REMARK 465 ASN A 72 REMARK 465 PRO A 73 REMARK 465 SER A 74 REMARK 465 ASN A 75 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 LYS A 134 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ARG C 132 REMARK 465 GLY C 133 REMARK 465 LYS C 134 REMARK 465 MET D 1 REMARK 465 DG E 1 REMARK 465 DG G 1 REMARK 465 DC G 2 REMARK 465 DG I 1 REMARK 465 DG K 1 REMARK 465 DC K 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC E 2 P OP1 OP2 REMARK 470 DC I 2 P OP1 OP2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 10 CB CG CD CE NZ REMARK 480 LYS A 14 CB CG CD CE NZ REMARK 480 LYS A 21 CB CG CD CE NZ REMARK 480 LYS C 10 CB CG CD CE NZ REMARK 480 LYS C 14 CB CG CD CE NZ REMARK 480 LYS C 21 CB CG CD CE NZ REMARK 480 ASP C 44 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 10 CA LYS A 10 CB 0.279 REMARK 500 LYS A 14 CA LYS A 14 CB 0.572 REMARK 500 LYS A 21 CA LYS A 21 CB -1.030 REMARK 500 GLU B 66 CD GLU B 66 OE1 0.082 REMARK 500 GLU B 66 CD GLU B 66 OE2 0.108 REMARK 500 LYS C 10 CA LYS C 10 CB 0.134 REMARK 500 LYS C 21 CA LYS C 21 CB -0.444 REMARK 500 DC G 6 O3' DC G 6 C3' -0.041 REMARK 500 DC I 6 O3' DC I 6 C3' -0.043 REMARK 500 DC J 10 O3' DC J 10 C3' 0.084 REMARK 500 DG J 11 O3' DG J 11 C3' -0.038 REMARK 500 DC J 14 C1' DC J 14 N1 0.090 REMARK 500 DG L 11 O3' DG L 11 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 14 N - CA - CB ANGL. DEV. = -58.2 DEGREES REMARK 500 LYS A 14 CA - CB - CG ANGL. DEV. = 28.9 DEGREES REMARK 500 LYS A 21 CB - CA - C ANGL. DEV. = 44.5 DEGREES REMARK 500 LYS A 21 N - CA - CB ANGL. DEV. = -18.1 DEGREES REMARK 500 LYS A 21 CA - CB - CG ANGL. DEV. = -27.8 DEGREES REMARK 500 ASP A 29 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 20 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 29 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 129 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LYS C 14 CB - CA - C ANGL. DEV. = 22.3 DEGREES REMARK 500 LYS C 14 N - CA - CB ANGL. DEV. = -32.8 DEGREES REMARK 500 LYS C 14 CA - CB - CG ANGL. DEV. = 21.9 DEGREES REMARK 500 ASP C 20 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS C 21 CB - CA - C ANGL. DEV. = 66.6 DEGREES REMARK 500 LYS C 21 N - CA - CB ANGL. DEV. = -43.9 DEGREES REMARK 500 LYS C 21 CA - CB - CG ANGL. DEV. = -43.3 DEGREES REMARK 500 ASP C 24 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 44 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP D 20 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP D 25 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP D 64 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 104 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 129 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DT E 5 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC E 6 O4' - C4' - C3' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC E 6 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG E 7 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG F 11 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG F 15 O3' - P - O5' ANGL. DEV. = -23.8 DEGREES REMARK 500 DG F 15 O3' - P - OP2 ANGL. DEV. = -16.5 DEGREES REMARK 500 DG F 15 O3' - P - OP1 ANGL. DEV. = -16.2 DEGREES REMARK 500 DG F 15 O5' - P - OP2 ANGL. DEV. = 10.8 DEGREES REMARK 500 DG F 15 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 15 C3' - O3' - P ANGL. DEV. = 15.0 DEGREES REMARK 500 DC F 16 O3' - P - O5' ANGL. DEV. = -24.4 DEGREES REMARK 500 DC F 16 O3' - P - OP2 ANGL. DEV. = -18.8 DEGREES REMARK 500 DC F 16 O5' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 DC F 16 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC G 6 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC G 6 C4' - C3' - C2' ANGL. DEV. = -7.6 DEGREES REMARK 500 DC G 6 O4' - C1' - N1 ANGL. DEV. = 7.4 DEGREES REMARK 500 DC G 6 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG G 7 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC H 10 O4' - C4' - C3' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC H 10 C4' - C3' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC H 10 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC H 10 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DG H 11 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 94 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 74.68 -100.47 REMARK 500 ASP A 29 -132.68 43.78 REMARK 500 PRO A 33 -174.25 -66.35 REMARK 500 SER A 49 146.20 170.80 REMARK 500 SER A 78 -75.48 -60.38 REMARK 500 LYS A 97 -3.11 -143.12 REMARK 500 GLN A 109 59.86 -107.32 REMARK 500 MET A 116 -15.85 -36.92 REMARK 500 ASP A 129 -71.71 -51.08 REMARK 500 ILE A 130 -53.65 -26.83 REMARK 500 GLU B 2 103.06 -58.38 REMARK 500 PRO B 8 156.62 -45.39 REMARK 500 LYS B 21 1.92 -60.45 REMARK 500 ASP B 29 -119.71 29.17 REMARK 500 LYS C 21 49.56 -101.11 REMARK 500 ASP C 29 -90.10 37.94 REMARK 500 ASP C 44 -1.26 80.35 REMARK 500 ASN C 70 -56.20 71.06 REMARK 500 LYS D 4 7.07 -68.68 REMARK 500 PRO D 8 151.85 -49.80 REMARK 500 ASP D 29 -84.37 23.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 8.72 ANGSTROMS REMARK 525 HOH A2003 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A2005 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A2007 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2008 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH C2001 DISTANCE = 9.74 ANGSTROMS REMARK 525 HOH C2002 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH C2003 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH C2005 DISTANCE = 6.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1132 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 ND1 REMARK 620 2 HIS A 127 NE2 82.2 REMARK 620 3 HIS A 131 NE2 84.2 92.4 REMARK 620 4 DC E 6 OP1 112.2 100.7 160.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1135 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 102 ND1 REMARK 620 2 HIS B 127 NE2 97.5 REMARK 620 3 HIS B 131 NE2 110.2 90.2 REMARK 620 4 DC G 6 OP1 105.2 97.1 142.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1132 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 102 ND1 REMARK 620 2 HIS C 127 NE2 91.3 REMARK 620 3 HIS C 131 NE2 112.1 98.9 REMARK 620 4 DC I 6 OP1 113.2 101.4 129.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1135 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 102 ND1 REMARK 620 2 HIS D 127 NE2 85.3 REMARK 620 3 HIS D 131 NE2 105.5 87.6 REMARK 620 4 DC K 6 OP1 110.5 90.2 143.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1009 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 3 N7 REMARK 620 2 HOH E2004 O 121.2 REMARK 620 3 DC L 10 OP2 98.7 121.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K1009 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC F 10 OP2 REMARK 620 2 DG K 3 N7 103.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1009 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG G 3 N7 REMARK 620 2 HOH G2009 O 85.8 REMARK 620 3 DC J 10 OP2 96.9 77.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN I1009 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC H 10 OP2 REMARK 620 2 DG I 3 N7 93.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN G1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN I1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN K1009 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BXI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI COLICIN E9 DNASE DOMAIN REMARK 900 WITH ITS COGNATE IMMUNITY PROTEIN IM9 REMARK 900 RELATED ID: 1EMV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITSCOGNATE REMARK 900 IMMUNITY PROTEIN IM9 (1.7 ANGSTROMS) REMARK 900 RELATED ID: 1FR2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN WITH A MUTANTIMMUNITY REMARK 900 PROTEIN IM9(E41A) REMARK 900 RELATED ID: 1FSJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN REMARK 900 RELATED ID: 1V13 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT HIS103ALA OF THE COLICIN E9 DNASE REMARK 900 DOMAIN IN COMPLEX WITH ZN+2 REMARK 900 RELATED ID: 1V14 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT HIS103ALA OF THE COLICIN E9 DNASE REMARK 900 DOMAIN IN COMPLEX WITH MG+2 DBREF 1V15 A 1 1 PDB 1V15 1V15 1 1 DBREF 1V15 A 2 134 UNP P09883 CEA9_ECOLI 450 582 DBREF 1V15 B 1 1 PDB 1V15 1V15 1 1 DBREF 1V15 B 2 134 UNP P09883 CEA9_ECOLI 450 582 DBREF 1V15 C 1 1 PDB 1V15 1V15 1 1 DBREF 1V15 C 2 134 UNP P09883 CEA9_ECOLI 450 582 DBREF 1V15 D 1 1 PDB 1V15 1V15 1 1 DBREF 1V15 D 2 134 UNP P09883 CEA9_ECOLI 450 582 DBREF 1V15 E 1 8 PDB 1V15 1V15 1 8 DBREF 1V15 F 9 16 PDB 1V15 1V15 9 16 DBREF 1V15 G 1 8 PDB 1V15 1V15 1 8 DBREF 1V15 H 9 16 PDB 1V15 1V15 9 16 DBREF 1V15 I 1 8 PDB 1V15 1V15 1 8 DBREF 1V15 J 9 16 PDB 1V15 1V15 9 16 DBREF 1V15 K 1 8 PDB 1V15 1V15 1 8 DBREF 1V15 L 9 16 PDB 1V15 1V15 9 16 SEQADV 1V15 ALA A 103 UNP P09883 HIS 551 ENGINEERED MUTATION SEQADV 1V15 ALA B 103 UNP P09883 HIS 551 ENGINEERED MUTATION SEQADV 1V15 ALA C 103 UNP P09883 HIS 551 ENGINEERED MUTATION SEQADV 1V15 ALA D 103 UNP P09883 HIS 551 ENGINEERED MUTATION SEQRES 1 A 134 MET GLU SER LYS ARG ASN LYS PRO GLY LYS ALA THR GLY SEQRES 2 A 134 LYS GLY LYS PRO VAL GLY ASP LYS TRP LEU ASP ASP ALA SEQRES 3 A 134 GLY LYS ASP SER GLY ALA PRO ILE PRO ASP ARG ILE ALA SEQRES 4 A 134 ASP LYS LEU ARG ASP LYS GLU PHE LYS SER PHE ASP ASP SEQRES 5 A 134 PHE ARG LYS ALA VAL TRP GLU GLU VAL SER LYS ASP PRO SEQRES 6 A 134 GLU LEU SER LYS ASN LEU ASN PRO SER ASN LYS SER SER SEQRES 7 A 134 VAL SER LYS GLY TYR SER PRO PHE THR PRO LYS ASN GLN SEQRES 8 A 134 GLN VAL GLY GLY ARG LYS VAL TYR GLU LEU HIS ALA ASP SEQRES 9 A 134 LYS PRO ILE SER GLN GLY GLY GLU VAL TYR ASP MET ASP SEQRES 10 A 134 ASN ILE ARG VAL THR THR PRO LYS ARG HIS ILE ASP ILE SEQRES 11 A 134 HIS ARG GLY LYS SEQRES 1 B 134 MET GLU SER LYS ARG ASN LYS PRO GLY LYS ALA THR GLY SEQRES 2 B 134 LYS GLY LYS PRO VAL GLY ASP LYS TRP LEU ASP ASP ALA SEQRES 3 B 134 GLY LYS ASP SER GLY ALA PRO ILE PRO ASP ARG ILE ALA SEQRES 4 B 134 ASP LYS LEU ARG ASP LYS GLU PHE LYS SER PHE ASP ASP SEQRES 5 B 134 PHE ARG LYS ALA VAL TRP GLU GLU VAL SER LYS ASP PRO SEQRES 6 B 134 GLU LEU SER LYS ASN LEU ASN PRO SER ASN LYS SER SER SEQRES 7 B 134 VAL SER LYS GLY TYR SER PRO PHE THR PRO LYS ASN GLN SEQRES 8 B 134 GLN VAL GLY GLY ARG LYS VAL TYR GLU LEU HIS ALA ASP SEQRES 9 B 134 LYS PRO ILE SER GLN GLY GLY GLU VAL TYR ASP MET ASP SEQRES 10 B 134 ASN ILE ARG VAL THR THR PRO LYS ARG HIS ILE ASP ILE SEQRES 11 B 134 HIS ARG GLY LYS SEQRES 1 C 134 MET GLU SER LYS ARG ASN LYS PRO GLY LYS ALA THR GLY SEQRES 2 C 134 LYS GLY LYS PRO VAL GLY ASP LYS TRP LEU ASP ASP ALA SEQRES 3 C 134 GLY LYS ASP SER GLY ALA PRO ILE PRO ASP ARG ILE ALA SEQRES 4 C 134 ASP LYS LEU ARG ASP LYS GLU PHE LYS SER PHE ASP ASP SEQRES 5 C 134 PHE ARG LYS ALA VAL TRP GLU GLU VAL SER LYS ASP PRO SEQRES 6 C 134 GLU LEU SER LYS ASN LEU ASN PRO SER ASN LYS SER SER SEQRES 7 C 134 VAL SER LYS GLY TYR SER PRO PHE THR PRO LYS ASN GLN SEQRES 8 C 134 GLN VAL GLY GLY ARG LYS VAL TYR GLU LEU HIS ALA ASP SEQRES 9 C 134 LYS PRO ILE SER GLN GLY GLY GLU VAL TYR ASP MET ASP SEQRES 10 C 134 ASN ILE ARG VAL THR THR PRO LYS ARG HIS ILE ASP ILE SEQRES 11 C 134 HIS ARG GLY LYS SEQRES 1 D 134 MET GLU SER LYS ARG ASN LYS PRO GLY LYS ALA THR GLY SEQRES 2 D 134 LYS GLY LYS PRO VAL GLY ASP LYS TRP LEU ASP ASP ALA SEQRES 3 D 134 GLY LYS ASP SER GLY ALA PRO ILE PRO ASP ARG ILE ALA SEQRES 4 D 134 ASP LYS LEU ARG ASP LYS GLU PHE LYS SER PHE ASP ASP SEQRES 5 D 134 PHE ARG LYS ALA VAL TRP GLU GLU VAL SER LYS ASP PRO SEQRES 6 D 134 GLU LEU SER LYS ASN LEU ASN PRO SER ASN LYS SER SER SEQRES 7 D 134 VAL SER LYS GLY TYR SER PRO PHE THR PRO LYS ASN GLN SEQRES 8 D 134 GLN VAL GLY GLY ARG LYS VAL TYR GLU LEU HIS ALA ASP SEQRES 9 D 134 LYS PRO ILE SER GLN GLY GLY GLU VAL TYR ASP MET ASP SEQRES 10 D 134 ASN ILE ARG VAL THR THR PRO LYS ARG HIS ILE ASP ILE SEQRES 11 D 134 HIS ARG GLY LYS SEQRES 1 E 8 DG DC DG DA DT DC DG DC SEQRES 1 F 8 DG DC DG DA DT DC DG DC SEQRES 1 G 8 DG DC DG DA DT DC DG DC SEQRES 1 H 8 DG DC DG DA DT DC DG DC SEQRES 1 I 8 DG DC DG DA DT DC DG DC SEQRES 1 J 8 DG DC DG DA DT DC DG DC SEQRES 1 K 8 DG DC DG DA DT DC DG DC SEQRES 1 L 8 DG DC DG DA DT DC DG DC HET ZN A1132 1 HET ZN B1135 1 HET ZN C1132 1 HET ZN D1135 1 HET ZN E1009 1 HET ZN G1009 1 HET ZN I1009 1 HET ZN K1009 1 HETNAM ZN ZINC ION FORMUL 13 ZN 8(ZN 2+) FORMUL 21 HOH *132(H2 O) HELIX 1 1 SER A 49 ASP A 64 1 16 HELIX 2 2 LYS A 76 GLY A 82 1 7 HELIX 3 3 PRO A 88 GLN A 92 5 5 HELIX 4 4 THR A 123 HIS A 131 1 9 HELIX 5 5 GLY B 19 LYS B 28 5 10 HELIX 6 6 PRO B 35 ARG B 43 1 9 HELIX 7 7 SER B 49 ASP B 64 1 16 HELIX 8 8 PRO B 65 SER B 68 5 4 HELIX 9 9 ASN B 72 LYS B 81 1 10 HELIX 10 10 PRO B 88 GLN B 92 5 5 HELIX 11 11 THR B 123 GLY B 133 1 11 HELIX 12 12 ASP C 24 LYS C 28 5 5 HELIX 13 13 PRO C 35 ARG C 43 1 9 HELIX 14 14 SER C 49 ASP C 64 1 16 HELIX 15 15 PRO C 65 SER C 68 5 4 HELIX 16 16 ASN C 72 LYS C 81 1 10 HELIX 17 17 PRO C 88 GLN C 92 5 5 HELIX 18 18 THR C 123 HIS C 131 1 9 HELIX 19 19 LYS D 21 LYS D 28 5 8 HELIX 20 20 PRO D 35 ARG D 43 1 9 HELIX 21 21 SER D 49 ASP D 64 1 16 HELIX 22 22 ASP D 64 LYS D 69 1 6 HELIX 23 23 ASN D 72 LYS D 81 1 10 HELIX 24 24 PRO D 88 GLN D 92 5 5 HELIX 25 25 THR D 123 GLY D 133 1 11 SHEET 1 AA 2 GLU A 100 ALA A 103 0 SHEET 2 AA 2 ILE A 119 THR A 122 -1 O ARG A 120 N HIS A 102 SHEET 1 BA 2 GLY B 9 LYS B 10 0 SHEET 2 BA 2 GLU B 46 PHE B 47 -1 O PHE B 47 N GLY B 9 SHEET 1 BB 3 ALA B 32 PRO B 33 0 SHEET 2 BB 3 ILE B 119 THR B 122 -1 O VAL B 121 N ALA B 32 SHEET 3 BB 3 GLU B 100 ALA B 103 -1 O GLU B 100 N THR B 122 SHEET 1 CA 2 GLY C 9 LYS C 10 0 SHEET 2 CA 2 GLU C 46 PHE C 47 -1 O PHE C 47 N GLY C 9 SHEET 1 CB 2 GLU C 100 ALA C 103 0 SHEET 2 CB 2 ILE C 119 THR C 122 -1 O ARG C 120 N HIS C 102 SHEET 1 DA 2 GLY D 9 LYS D 10 0 SHEET 2 DA 2 GLU D 46 PHE D 47 -1 O PHE D 47 N GLY D 9 SHEET 1 DB 2 GLU D 100 ALA D 103 0 SHEET 2 DB 2 ILE D 119 THR D 122 -1 O ARG D 120 N HIS D 102 LINK ND1 HIS A 102 ZN ZN A1132 1555 1555 2.43 LINK NE2 HIS A 127 ZN ZN A1132 1555 1555 2.20 LINK NE2 HIS A 131 ZN ZN A1132 1555 1555 2.14 LINK ZN ZN A1132 OP1 DC E 6 1555 1555 1.91 LINK ND1 HIS B 102 ZN ZN B1135 1555 1555 2.27 LINK NE2 HIS B 127 ZN ZN B1135 1555 1555 2.04 LINK NE2 HIS B 131 ZN ZN B1135 1555 1555 2.10 LINK ZN ZN B1135 OP1 DC G 6 1555 1555 2.11 LINK ND1 HIS C 102 ZN ZN C1132 1555 1555 1.96 LINK NE2 HIS C 127 ZN ZN C1132 1555 1555 2.11 LINK NE2 HIS C 131 ZN ZN C1132 1555 1555 2.12 LINK ZN ZN C1132 OP1 DC I 6 1555 1555 1.78 LINK ND1 HIS D 102 ZN ZN D1135 1555 1555 2.30 LINK NE2 HIS D 127 ZN ZN D1135 1555 1555 2.15 LINK NE2 HIS D 131 ZN ZN D1135 1555 1555 1.98 LINK ZN ZN D1135 OP1 DC K 6 1555 1555 1.90 LINK N7 DG E 3 ZN ZN E1009 1555 1555 2.00 LINK ZN ZN E1009 O HOH E2004 1555 1555 1.87 LINK ZN ZN E1009 OP2 DC L 10 1555 1555 2.45 LINK OP2 DC F 10 ZN ZN K1009 1555 1555 2.46 LINK N7 DG G 3 ZN ZN G1009 1555 1555 2.25 LINK ZN ZN G1009 O HOH G2009 1555 1555 1.69 LINK ZN ZN G1009 OP2 DC J 10 1555 1555 2.23 LINK OP2 DC H 10 ZN ZN I1009 1555 1555 2.13 LINK N7 DG I 3 ZN ZN I1009 1555 1555 2.23 LINK N7 DG K 3 ZN ZN K1009 1555 1555 1.91 SITE 1 AC1 5 HIS A 102 HIS A 127 HIS A 131 DT E 5 SITE 2 AC1 5 DC E 6 SITE 1 AC2 5 HIS B 102 HIS B 127 HIS B 131 DT G 5 SITE 2 AC2 5 DC G 6 SITE 1 AC3 5 HIS C 102 HIS C 127 HIS C 131 DT I 5 SITE 2 AC3 5 DC I 6 SITE 1 AC4 5 HIS D 102 HIS D 127 HIS D 131 DT K 5 SITE 2 AC4 5 DC K 6 SITE 1 AC5 4 DG E 3 HOH E2004 DG L 9 DC L 10 SITE 1 AC6 3 DG G 3 HOH G2009 DC J 10 SITE 1 AC7 3 DC H 10 DG I 3 HOH I2006 SITE 1 AC8 2 DC F 10 DG K 3 CRYST1 93.145 123.310 110.531 90.00 90.00 90.00 C 2 2 21 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009047 0.00000