HEADER TRANSFERASE 12-APR-04 1V1A TITLE 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND 2- TITLE 2 KETO-3-DEOXYGLUCONATE AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-KETO-3-DEOXYGLUCONATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS 2-KETO-3-DEOXYGLUCONATE KINASE, ATP, THERMUS THERMOPHILUS, STRUCTURAL KEYWDS 2 GENOMICS, TRANSFERASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR T.H.TAHIROV,E.INAGAKI REVDAT 5 27-FEB-19 1V1A 1 JRNL REMARK REVDAT 4 15-APR-15 1V1A 1 REMARK VERSN FORMUL REVDAT 3 24-FEB-09 1V1A 1 VERSN REVDAT 2 01-JUL-04 1V1A 1 JRNL REVDAT 1 14-APR-04 1V1A 0 JRNL AUTH N.OHSHIMA,E.INAGAKI,K.YASUIKE,K.TAKIO,T.H.TAHIROV JRNL TITL STRUCTURE OF THERMUS THERMOPHILUS 2-KETO-3-DEOXYGLUCONATE JRNL TITL 2 KINASE: EVIDENCE FOR RECOGNITION OF AN OPEN CHAIN SUBSTRATE. JRNL REF J. MOL. BIOL. V. 340 477 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15210349 JRNL DOI 10.1016/J.JMB.2004.04.074 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.INAGAKI,Y.UKITA,M.KUMEI,Y.KAJIHARA,T.H.TAHIROV REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 761 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15039578 REMARK 1 DOI 10.1107/S0907444904002665 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1289180.400 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 37822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1852 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3387 REMARK 3 BIN R VALUE (WORKING SET) : 0.2938 REMARK 3 BIN FREE R VALUE : 0.3657 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.36 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 212 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.70900 REMARK 3 B22 (A**2) : -3.70900 REMARK 3 B33 (A**2) : 7.41700 REMARK 3 B12 (A**2) : -3.06400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.53 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.940 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 8.460 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.640 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 11.510; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 85.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DHA.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : DHA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CRYSTAL IS WITH HEMIHEDRAL TWINNING, REMARK 3 TWINNING OPERATOR IS "H, -H-K, -L", TWINNING FRACTION IS 0.5 REMARK 4 REMARK 4 1V1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-04. REMARK 100 THE DEPOSITION ID IS D_1290014976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE R-AXISV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.580 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY V19 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR-DIFFUSION SITTING DROP AT 298 REMARK 280 K. 10.0 MG/ML OF PROTEIN SOLUTION CONTAINING 5 MM KDG AND 5 MM REMARK 280 AMP-PNP WAS MIXED WITH RESERVOIR SOLUTION CONTAINING 0.35 M REMARK 280 AMMONIUM SULFATE AND 0.1 M TRIS-HCL BUFFER, PH 8.5. BEFORE THE REMARK 280 DATA COLLECTION THE CRYSTAL WAS SOAKED IN SOLUTION CONTAINING REMARK 280 0.35 M MAGNESIUM CHLORIDE INSTEAD OF AMMONIUM SULFATE. THE REMARK 280 CRYOPROTECTANT CONTAINED 33% OF ETHYLENE GLYCOL IN ADDITION TO REMARK 280 MAGNESIUM CHLORIDE, BUFFER AND LIGANDS, PH 8.50, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.35050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.35050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.35050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 42.16050 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 73.02413 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 84.32100 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 303 REMARK 465 THR A 304 REMARK 465 GLN A 305 REMARK 465 THR A 306 REMARK 465 PHE A 307 REMARK 465 MET A 308 REMARK 465 ARG A 309 REMARK 465 ALA B 303 REMARK 465 THR B 304 REMARK 465 GLN B 305 REMARK 465 THR B 306 REMARK 465 PHE B 307 REMARK 465 MET B 308 REMARK 465 ARG B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 302 CA C O CB CG CD CE REMARK 470 LYS A 302 NZ REMARK 470 LYS B 302 CA C O CB CG CD CE REMARK 470 LYS B 302 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 83 149.10 -32.34 REMARK 500 LEU A 96 34.63 -94.20 REMARK 500 LEU A 113 98.52 2.08 REMARK 500 ASP A 121 -14.88 -49.85 REMARK 500 SER A 139 156.27 177.46 REMARK 500 ASN A 165 63.65 32.02 REMARK 500 GLU A 194 -54.12 -23.24 REMARK 500 LEU A 211 52.59 -91.43 REMARK 500 ALA A 225 140.56 169.24 REMARK 500 ASP A 230 73.29 49.01 REMARK 500 ALA A 243 90.34 -54.66 REMARK 500 VAL A 244 -85.33 -72.73 REMARK 500 HIS A 288 20.26 -148.57 REMARK 500 GLU A 298 -31.06 -34.28 REMARK 500 LEU A 301 -49.81 109.98 REMARK 500 GLU B 92 118.46 -165.96 REMARK 500 SER B 108 159.33 -49.13 REMARK 500 LEU B 113 101.11 -23.38 REMARK 500 PHE B 118 171.77 174.96 REMARK 500 ALA B 149 -74.56 -47.51 REMARK 500 TRP B 171 165.52 179.30 REMARK 500 LYS B 223 25.76 -75.60 REMARK 500 VAL B 244 -72.58 -67.06 REMARK 500 HIS B 288 16.63 -151.91 REMARK 500 LEU B 301 -67.80 -8.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDG A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDG B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J5V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-KETO-3-DEOXYGLUCONATE KINASE (TM0067)FROM REMARK 900 THERMOTOGA MARITIMA AT 2.3 A RESOLUTION REMARK 900 RELATED ID: 1V19 RELATED DB: PDB REMARK 900 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 1V1B RELATED DB: PDB REMARK 900 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND REMARK 900 ATP DBREF 1V1A A 1 309 PDB 1V1A 1V1A 1 309 DBREF 1V1A B 1 309 PDB 1V1A 1V1A 1 309 SEQRES 1 A 309 MET LEU GLU VAL VAL THR ALA GLY GLU PRO LEU VAL ALA SEQRES 2 A 309 LEU VAL PRO GLN GLU PRO GLY HIS LEU ARG GLY LYS ARG SEQRES 3 A 309 LEU LEU GLU VAL TYR VAL GLY GLY ALA GLU VAL ASN VAL SEQRES 4 A 309 ALA VAL ALA LEU ALA ARG LEU GLY VAL LYS VAL GLY PHE SEQRES 5 A 309 VAL GLY ARG VAL GLY GLU ASP GLU LEU GLY ALA MET VAL SEQRES 6 A 309 GLU GLU ARG LEU ARG ALA GLU GLY VAL ASP LEU THR HIS SEQRES 7 A 309 PHE ARG ARG ALA PRO GLY PHE THR GLY LEU TYR LEU ARG SEQRES 8 A 309 GLU TYR LEU PRO LEU GLY GLN GLY ARG VAL PHE TYR TYR SEQRES 9 A 309 ARG LYS GLY SER ALA GLY SER ALA LEU ALA PRO GLY ALA SEQRES 10 A 309 PHE ASP PRO ASP TYR LEU GLU GLY VAL ARG PHE LEU HIS SEQRES 11 A 309 LEU SER GLY ILE THR PRO ALA LEU SER PRO GLU ALA ARG SEQRES 12 A 309 ALA PHE SER LEU TRP ALA MET GLU GLU ALA LYS ARG ARG SEQRES 13 A 309 GLY VAL ARG VAL SER LEU ASP VAL ASN TYR ARG GLN THR SEQRES 14 A 309 LEU TRP SER PRO GLU GLU ALA ARG GLY PHE LEU GLU ARG SEQRES 15 A 309 ALA LEU PRO GLY VAL ASP LEU LEU PHE LEU SER GLU GLU SEQRES 16 A 309 GLU ALA GLU LEU LEU PHE GLY ARG VAL GLU GLU ALA LEU SEQRES 17 A 309 ARG ALA LEU SER ALA PRO GLU VAL VAL LEU LYS ARG GLY SEQRES 18 A 309 ALA LYS GLY ALA TRP ALA PHE VAL ASP GLY ARG ARG VAL SEQRES 19 A 309 GLU GLY SER ALA PHE ALA VAL GLU ALA VAL ASP PRO VAL SEQRES 20 A 309 GLY ALA GLY ASP ALA PHE ALA ALA GLY TYR LEU ALA GLY SEQRES 21 A 309 ALA VAL TRP GLY LEU PRO VAL GLU GLU ARG LEU ARG LEU SEQRES 22 A 309 ALA ASN LEU LEU GLY ALA SER VAL ALA ALA SER ARG GLY SEQRES 23 A 309 ASP HIS GLU GLY ALA PRO TYR ARG GLU ASP LEU GLU VAL SEQRES 24 A 309 LEU LEU LYS ALA THR GLN THR PHE MET ARG SEQRES 1 B 309 MET LEU GLU VAL VAL THR ALA GLY GLU PRO LEU VAL ALA SEQRES 2 B 309 LEU VAL PRO GLN GLU PRO GLY HIS LEU ARG GLY LYS ARG SEQRES 3 B 309 LEU LEU GLU VAL TYR VAL GLY GLY ALA GLU VAL ASN VAL SEQRES 4 B 309 ALA VAL ALA LEU ALA ARG LEU GLY VAL LYS VAL GLY PHE SEQRES 5 B 309 VAL GLY ARG VAL GLY GLU ASP GLU LEU GLY ALA MET VAL SEQRES 6 B 309 GLU GLU ARG LEU ARG ALA GLU GLY VAL ASP LEU THR HIS SEQRES 7 B 309 PHE ARG ARG ALA PRO GLY PHE THR GLY LEU TYR LEU ARG SEQRES 8 B 309 GLU TYR LEU PRO LEU GLY GLN GLY ARG VAL PHE TYR TYR SEQRES 9 B 309 ARG LYS GLY SER ALA GLY SER ALA LEU ALA PRO GLY ALA SEQRES 10 B 309 PHE ASP PRO ASP TYR LEU GLU GLY VAL ARG PHE LEU HIS SEQRES 11 B 309 LEU SER GLY ILE THR PRO ALA LEU SER PRO GLU ALA ARG SEQRES 12 B 309 ALA PHE SER LEU TRP ALA MET GLU GLU ALA LYS ARG ARG SEQRES 13 B 309 GLY VAL ARG VAL SER LEU ASP VAL ASN TYR ARG GLN THR SEQRES 14 B 309 LEU TRP SER PRO GLU GLU ALA ARG GLY PHE LEU GLU ARG SEQRES 15 B 309 ALA LEU PRO GLY VAL ASP LEU LEU PHE LEU SER GLU GLU SEQRES 16 B 309 GLU ALA GLU LEU LEU PHE GLY ARG VAL GLU GLU ALA LEU SEQRES 17 B 309 ARG ALA LEU SER ALA PRO GLU VAL VAL LEU LYS ARG GLY SEQRES 18 B 309 ALA LYS GLY ALA TRP ALA PHE VAL ASP GLY ARG ARG VAL SEQRES 19 B 309 GLU GLY SER ALA PHE ALA VAL GLU ALA VAL ASP PRO VAL SEQRES 20 B 309 GLY ALA GLY ASP ALA PHE ALA ALA GLY TYR LEU ALA GLY SEQRES 21 B 309 ALA VAL TRP GLY LEU PRO VAL GLU GLU ARG LEU ARG LEU SEQRES 22 B 309 ALA ASN LEU LEU GLY ALA SER VAL ALA ALA SER ARG GLY SEQRES 23 B 309 ASP HIS GLU GLY ALA PRO TYR ARG GLU ASP LEU GLU VAL SEQRES 24 B 309 LEU LEU LYS ALA THR GLN THR PHE MET ARG HET KDG A1302 12 HET ADP A1303 27 HET KDG B1302 12 HET ADP B1303 27 HETNAM KDG 2-KETO-3-DEOXYGLUCONATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 KDG 2(C6 H10 O6) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 HOH *211(H2 O) HELIX 1 1 HIS A 21 LYS A 25 5 5 HELIX 2 2 GLY A 34 LEU A 46 1 13 HELIX 3 3 ASP A 59 GLY A 73 1 15 HELIX 4 4 ALA A 109 LEU A 113 5 5 HELIX 5 5 ASP A 119 GLU A 124 5 6 HELIX 6 6 ILE A 134 LEU A 138 5 5 HELIX 7 7 SER A 139 ARG A 155 1 17 HELIX 8 8 SER A 172 LEU A 184 1 13 HELIX 9 9 PRO A 185 VAL A 187 5 3 HELIX 10 10 GLU A 194 GLY A 202 1 9 HELIX 11 11 ARG A 203 LEU A 211 1 9 HELIX 12 12 GLY A 221 LYS A 223 5 3 HELIX 13 13 GLY A 248 TRP A 263 1 16 HELIX 14 14 PRO A 266 ALA A 283 1 18 HELIX 15 15 TYR A 293 GLU A 298 1 6 HELIX 16 16 HIS B 21 LYS B 25 5 5 HELIX 17 17 GLY B 34 LEU B 46 1 13 HELIX 18 18 ASP B 59 GLU B 72 1 14 HELIX 19 19 SER B 108 ALA B 112 5 5 HELIX 20 20 ASP B 119 LEU B 123 5 5 HELIX 21 21 ILE B 134 LEU B 138 5 5 HELIX 22 22 SER B 139 ARG B 155 1 17 HELIX 23 23 SER B 172 LEU B 184 1 13 HELIX 24 24 PRO B 185 VAL B 187 5 3 HELIX 25 25 GLU B 194 LEU B 200 1 7 HELIX 26 26 ARG B 203 LEU B 211 1 9 HELIX 27 27 GLY B 221 LYS B 223 5 3 HELIX 28 28 GLY B 248 TRP B 263 1 16 HELIX 29 29 PRO B 266 ALA B 283 1 18 HELIX 30 30 TYR B 293 GLU B 298 1 6 SHEET 1 AA 9 PHE A 79 ARG A 81 0 SHEET 2 AA 9 VAL A 50 VAL A 56 1 O GLY A 54 N ARG A 80 SHEET 3 AA 9 VAL A 4 ALA A 7 1 O VAL A 4 N GLY A 51 SHEET 4 AA 9 PHE A 128 SER A 132 1 O PHE A 128 N VAL A 5 SHEET 5 AA 9 ARG A 159 ASP A 163 1 O ARG A 159 N LEU A 129 SHEET 6 AA 9 LEU A 189 SER A 193 1 O LEU A 189 N LEU A 162 SHEET 7 AA 9 GLU A 215 LYS A 219 1 O GLU A 215 N LEU A 190 SHEET 8 AA 9 ALA A 225 VAL A 229 -1 O TRP A 226 N LEU A 218 SHEET 9 AA 9 ARG A 232 GLU A 235 -1 O ARG A 232 N VAL A 229 SHEET 1 AB 8 GLY A 99 TYR A 104 0 SHEET 2 AB 8 LEU A 88 TYR A 93 -1 O LEU A 88 N TYR A 104 SHEET 3 AB 8 LEU A 11 VAL A 15 1 O VAL A 12 N TYR A 89 SHEET 4 AB 8 LEU A 27 GLY A 33 -1 O GLU A 29 N VAL A 15 SHEET 5 AB 8 LEU B 27 GLY B 33 -1 O LEU B 28 N LEU A 28 SHEET 6 AB 8 LEU B 11 PRO B 16 -1 O LEU B 11 N GLY B 33 SHEET 7 AB 8 LEU B 88 TYR B 93 1 O TYR B 89 N LEU B 14 SHEET 8 AB 8 GLY B 99 TYR B 104 -1 O ARG B 100 N GLU B 92 SHEET 1 BA 3 VAL B 4 ALA B 7 0 SHEET 2 BA 3 VAL B 50 VAL B 56 1 O GLY B 51 N THR B 6 SHEET 3 BA 3 PHE B 79 ARG B 81 1 O ARG B 80 N VAL B 56 SHEET 1 BB 6 LEU B 131 SER B 132 0 SHEET 2 BB 6 SER B 161 ASP B 163 1 O SER B 161 N LEU B 131 SHEET 3 BB 6 LEU B 189 SER B 193 1 O LEU B 189 N LEU B 162 SHEET 4 BB 6 GLU B 215 LYS B 219 1 O GLU B 215 N LEU B 190 SHEET 5 BB 6 ALA B 225 VAL B 229 -1 O TRP B 226 N LEU B 218 SHEET 6 BB 6 ARG B 232 GLY B 236 -1 O ARG B 232 N VAL B 229 SITE 1 AC1 14 LEU A 11 GLY A 34 ALA A 35 ASN A 38 SITE 2 AC1 14 TYR A 89 TYR A 103 ARG A 105 ILE A 134 SITE 3 AC1 14 ARG A 167 GLY A 248 ASP A 251 ASP A 287 SITE 4 AC1 14 HOH A2050 HOH A2117 SITE 1 AC2 14 LYS A 219 GLY A 221 GLY A 224 PHE A 239 SITE 2 AC2 14 ALA A 249 GLY A 250 ASN A 275 ALA A 279 SITE 3 AC2 14 HOH A2073 HOH A2074 HOH A2117 HOH A2118 SITE 4 AC2 14 HOH A2119 HOH A2120 SITE 1 AC3 11 GLY B 34 ALA B 35 ASN B 38 TYR B 89 SITE 2 AC3 11 TYR B 103 ARG B 105 ILE B 134 ARG B 167 SITE 3 AC3 11 ASP B 251 ASP B 287 HOH B2040 SITE 1 AC4 11 LYS B 219 GLY B 221 GLY B 224 PHE B 239 SITE 2 AC4 11 ALA B 243 GLY B 250 PHE B 253 ASN B 275 SITE 3 AC4 11 HOH B2058 HOH B2089 HOH B2091 CRYST1 84.321 84.321 168.701 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011859 0.006847 0.000000 0.00000 SCALE2 0.000000 0.013694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005928 0.00000