data_1V1D # _entry.id 1V1D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1V1D PDBE EBI-14996 WWPDB D_1290014996 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1BBA unspecified 'BOVINE PANCREATIC POLYPEPTIDE (BPP) (NMR, MEAN STRUCTURE)' PDB 1LJV unspecified 'BOVINE PANCREATIC POLYPEPTIDE BOUND TO DPC MICELLES' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1V1D _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-04-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nicoll, A.' 1 'Allemann, R.K.' 2 # _citation.id primary _citation.title 'Nucleophilic and General Acid Catalysis at Physiological Ph by a Designed Miniature Esterase' _citation.journal_abbrev Org.Biomol.Chem. _citation.journal_volume 2 _citation.page_first 2175 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1477-0520 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15280952 _citation.pdbx_database_id_DOI 10.1039/B404730C # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nicoll, A.' 1 primary 'Allemann, R.K.' 2 # _cell.entry_id 1V1D _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V1D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'PANCREATIC HORMONE' _entity.formula_weight 3688.110 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation YES _entity.pdbx_fragment 'PANCREATIC POLYPEPTIDE RESIDUES 30-60' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PANCREATIC POLYPEPTIDE, PP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code APLEPEYPGDNATPEQMHQYAHQLRRYINML _entity_poly.pdbx_seq_one_letter_code_can APLEPEYPGDNATPEQMHQYAHQLRRYINML _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 LEU n 1 4 GLU n 1 5 PRO n 1 6 GLU n 1 7 TYR n 1 8 PRO n 1 9 GLY n 1 10 ASP n 1 11 ASN n 1 12 ALA n 1 13 THR n 1 14 PRO n 1 15 GLU n 1 16 GLN n 1 17 MET n 1 18 HIS n 1 19 GLN n 1 20 TYR n 1 21 ALA n 1 22 HIS n 1 23 GLN n 1 24 LEU n 1 25 ARG n 1 26 ARG n 1 27 TYR n 1 28 ILE n 1 29 ASN n 1 30 MET n 1 31 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'BOS TAURUS' _pdbx_entity_src_syn.organism_common_name BOVINE _pdbx_entity_src_syn.ncbi_taxonomy_id 9913 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PAHO_BOVIN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P01302 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1V1D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 31 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01302 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 60 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 31 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1V1D HIS A 18 ? UNP P01302 ALA 47 'engineered mutation' 18 1 1 1V1D HIS A 22 ? UNP P01302 ALA 51 'engineered mutation' 22 2 1 1V1D GLN A 23 ? UNP P01302 GLU 52 'engineered mutation' 23 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type NOESY/TOCSY _pdbx_nmr_exptl.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1V1D _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1V1D _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING STANDARD EXPERIMENTAL TECHNIQUES' # _pdbx_nmr_ensemble.entry_id 1V1D _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'NO VIOLATIONS' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS ? 'BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' CNS ? ? 2 # _exptl.entry_id 1V1D _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1V1D _struct.title 'Nucleophilic and General Acid Catalysis at Physiological pH by a Designed Miniature Esterase' _struct.pdbx_descriptor 'PANCREATIC HORMONE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1V1D _struct_keywords.pdbx_keywords HORMONE _struct_keywords.text 'HORMONE, CLEAVAGE ON PAIR OF BASIC RESIDUES, PANCREAS' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 13 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 31 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 13 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 31 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1V1D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1V1D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 LEU 31 31 31 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-14 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _pdbx_entry_details.entry_id 1V1D _pdbx_entry_details.compound_details 'CHAIN A ENGINEERED MUTATION ALA47HIS, ALA51HIS,GLU52GLN' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'MUTATIONS: A18H, A22H, E23Q' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 3 ? ? -127.88 -112.22 2 1 PRO A 5 ? ? -66.32 -156.61 3 1 ASN A 11 ? ? -176.07 76.30 4 2 GLU A 4 ? ? 58.32 87.97 5 2 ASN A 11 ? ? -178.72 82.79 6 3 PRO A 2 ? ? -71.60 -167.43 7 3 GLU A 4 ? ? 58.20 77.50 8 3 GLU A 6 ? ? 66.22 132.17 9 3 ASN A 11 ? ? -173.13 85.86 10 3 GLU A 15 ? ? -65.62 -77.20 11 3 GLN A 16 ? ? -38.98 -38.39 12 4 LEU A 3 ? ? 64.63 103.86 13 4 ASN A 11 ? ? -178.74 76.34 14 5 PRO A 2 ? ? -57.49 -160.58 15 5 GLU A 4 ? ? -50.90 105.80 16 5 ASN A 11 ? ? 47.43 88.07 17 5 ALA A 12 ? ? -51.18 170.89 18 6 LEU A 3 ? ? -138.85 -77.24 19 6 GLU A 4 ? ? 53.11 95.35 20 6 PRO A 5 ? ? -65.85 -166.47 21 6 ASN A 11 ? ? -175.33 79.42 22 7 PRO A 2 ? ? -72.20 -167.02 23 7 ASN A 11 ? ? -176.08 75.70 24 8 LEU A 3 ? ? -155.30 -81.58 25 8 GLU A 4 ? ? 57.84 71.03 26 8 PRO A 5 ? ? -63.72 -155.68 27 8 GLU A 6 ? ? -139.91 -81.39 28 8 TYR A 7 ? ? -176.45 143.49 29 8 ASN A 11 ? ? -178.50 74.68 30 9 PRO A 2 ? ? -72.56 -167.63 31 9 PRO A 5 ? ? -64.54 -171.00 32 9 GLU A 6 ? ? -145.30 44.43 33 9 TYR A 7 ? ? 60.03 148.38 34 9 ASN A 11 ? ? -176.16 75.48 35 10 PRO A 2 ? ? -57.86 -158.25 36 10 LEU A 3 ? ? -85.28 -71.58 37 10 GLU A 4 ? ? 68.10 90.40 38 10 ASN A 11 ? ? -171.59 64.14 39 11 PRO A 2 ? ? -86.83 34.50 40 11 PRO A 5 ? ? -77.76 -160.50 41 11 ASN A 11 ? ? -178.84 85.27 42 11 ALA A 12 ? ? -68.96 -179.58 43 12 GLU A 4 ? ? -56.44 109.76 44 12 GLU A 6 ? ? -110.99 -76.14 45 12 TYR A 7 ? ? -179.72 142.49 46 12 ASN A 11 ? ? -176.86 70.64 47 13 ASN A 11 ? ? -178.99 82.69 48 14 PRO A 2 ? ? -68.79 56.65 49 14 LEU A 3 ? ? 60.42 101.27 50 14 GLU A 6 ? ? 75.90 -75.99 51 14 TYR A 7 ? ? 176.44 146.77 52 14 ASN A 11 ? ? -178.45 86.20 53 15 LEU A 3 ? ? -170.89 -82.34 54 15 GLU A 4 ? ? 54.42 96.73 55 15 GLU A 6 ? ? -121.90 -68.40 56 15 TYR A 7 ? ? 179.73 148.22 57 15 THR A 13 ? ? -52.73 170.22 58 16 LEU A 3 ? ? -134.47 -83.81 59 16 GLU A 4 ? ? 53.79 74.92 60 16 ASN A 11 ? ? -173.16 73.88 61 17 LEU A 3 ? ? -178.01 -81.07 62 17 GLU A 4 ? ? 53.91 82.37 63 17 PRO A 5 ? ? -70.77 -158.06 64 17 ASN A 11 ? ? -175.19 88.59 65 18 LEU A 3 ? ? -159.68 -67.79 66 18 GLU A 4 ? ? 51.59 83.39 67 18 PRO A 5 ? ? -65.92 -159.03 68 18 ASN A 11 ? ? -177.38 85.54 69 19 LEU A 3 ? ? -124.93 -79.83 70 19 GLU A 4 ? ? 60.42 100.94 71 19 GLU A 6 ? ? 66.41 139.49 72 19 ASN A 11 ? ? -177.29 93.51 73 20 LEU A 3 ? ? -149.75 -78.53 74 20 GLU A 4 ? ? 59.77 88.08 75 20 GLU A 6 ? ? 63.58 146.47 76 20 ASN A 11 ? ? -178.06 83.56 #