HEADER PHOTOSYNTHESIS 14-OCT-03 1V2B TITLE CRYSTAL STRUCTURE OF PSBP PROTEIN IN THE OXYGEN-EVOLVING COMPLEX OF TITLE 2 PHOTOSYSTEM II FROM HIGHER PLANTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23-KDA POLYPEPTIDE OF PHOTOSYSTEM II OXYGEN-EVOLVING COMPND 3 COMPLEX; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: RESIDUES 10-186; COMPND 6 SYNONYM: OXYGEN-EVOLVING COMPLEX 23-KDA PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: PSBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS ALPHA-BETA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 2 STRUCTURAL GENOMICS, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR K.IFUKU,T.NAKATSU,H.KATO,F.SATO,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V2B 1 HETSYN REVDAT 3 29-JUL-20 1V2B 1 COMPND REMARK HETNAM SITE REVDAT 2 24-FEB-09 1V2B 1 VERSN REVDAT 1 18-MAY-04 1V2B 0 JRNL AUTH K.IFUKU,T.NAKATSU,H.KATO,F.SATO JRNL TITL CRYSTAL STRUCTURE OF THE PSBP PROTEIN OF PHOTOSYSTEM II FROM JRNL TITL 2 NICOTIANA TABACUM JRNL REF EMBO REP. V. 5 362 2004 JRNL REFN ISSN 1469-221X JRNL PMID 15031714 JRNL DOI 10.1038/SJ.EMBOR.7400113 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.IFUKU,T.NAKATSU,H.KATO,F.SATO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC STUDIES ON REMARK 1 TITL 2 THE EXTRINSIC 23 KDA PROTEIN IN THE OXYGEN-EVOLVING COMPLEX REMARK 1 TITL 3 OF PHOTOSYSTEM II REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1462 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12876351 REMARK 1 DOI 10.1107/S0907444903011004 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.IFUKU,F.SATO REMARK 1 TITL A TRUNCATED MUTANT OF THE EXTRINSIC 23-KDA PROTEIN THAT REMARK 1 TITL 2 ABSOLUTELY REQUIRES THE EXTRINSIC 17-KDA PROTEIN FOR CA2+ REMARK 1 TITL 3 RETENTION IN PHOTOSYSTEM II REMARK 1 REF PLANT CELL.PHYSIOL. V. 43 1244 2002 REMARK 1 REFN ISSN 0032-0781 REMARK 1 PMID 12407205 REMARK 1 DOI 10.1093/PCP/PCF136 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.IFUKU,F.SATO REMARK 1 TITL IMPORTANCE OF THE N-TERMINAL SEQUENCE OF THE EXTRINSIC 23 REMARK 1 TITL 2 KDA POLYPEPTIDE IN PHOTOSYSTEM II IN OXYGEN EVOLUTION REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1546 196 2001 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 11257522 REMARK 1 DOI 10.1016/S0167-4838(01)00139-X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 44560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2376 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 433 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2406 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3260 ; 0.946 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 5.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1792 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1010 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 344 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.110 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.099 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1478 ; 0.470 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2382 ; 0.889 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 928 ; 1.326 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 878 ; 2.232 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000006117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 90.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 52.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, MES, LITHIUM SULFATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.26000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.22100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.22100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 PRO A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 ASP A 15 REMARK 465 GLY A 89 REMARK 465 ARG A 90 REMARK 465 GLN A 91 REMARK 465 ALA A 92 REMARK 465 TYR A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 LYS A 96 REMARK 465 THR A 97 REMARK 465 ASP A 98 REMARK 465 SER A 99 REMARK 465 GLU A 100 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 PHE A 103 REMARK 465 GLU A 104 REMARK 465 SER A 105 REMARK 465 ASP A 106 REMARK 465 ALA A 136 REMARK 465 ASP A 137 REMARK 465 GLY A 138 REMARK 465 ASN A 139 REMARK 465 GLU A 140 REMARK 465 GLY B 10 REMARK 465 LYS B 11 REMARK 465 PRO B 12 REMARK 465 LYS B 13 REMARK 465 THR B 14 REMARK 465 ASP B 15 REMARK 465 GLN B 91 REMARK 465 ALA B 92 REMARK 465 TYR B 93 REMARK 465 SER B 94 REMARK 465 GLY B 95 REMARK 465 LYS B 96 REMARK 465 THR B 97 REMARK 465 ASP B 98 REMARK 465 SER B 99 REMARK 465 GLU B 100 REMARK 465 GLY B 101 REMARK 465 GLY B 102 REMARK 465 PHE B 103 REMARK 465 GLU B 104 REMARK 465 SER B 105 REMARK 465 ASP B 106 REMARK 465 ALA B 107 REMARK 465 GLY B 138 REMARK 465 ASN B 139 REMARK 465 GLU B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 16 OG1 CG2 REMARK 470 GLN A 19 CD OE1 NE2 REMARK 470 LYS A 27 CD CE NZ REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 69 CE NZ REMARK 470 LYS A 124 CE NZ REMARK 470 GLN A 125 CD OE1 NE2 REMARK 470 LYS B 38 CD CE NZ REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 170 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 98.87 -161.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MY_001000037.1 RELATED DB: TARGETDB DBREF 1V2B A 10 186 UNP P18212 PSBP2_TOBAC 90 266 DBREF 1V2B B 10 186 UNP P18212 PSBP2_TOBAC 90 266 SEQRES 1 A 177 GLY LYS PRO LYS THR ASP THR ASP PHE GLN THR TYR ASN SEQRES 2 A 177 GLY ASP GLY PHE LYS LEU GLN ILE PRO SER LYS TRP ASN SEQRES 3 A 177 PRO ASN LYS GLU VAL GLU TYR PRO GLY GLN VAL LEU ARG SEQRES 4 A 177 PHE GLU ASP ASN PHE ASP ALA THR SER ASN VAL ILE VAL SEQRES 5 A 177 ALA ILE THR PRO THR ASP LYS LYS SER ILE THR ASP PHE SEQRES 6 A 177 GLY SER PRO GLU GLN PHE LEU SER GLN VAL ASP TYR LEU SEQRES 7 A 177 LEU GLY ARG GLN ALA TYR SER GLY LYS THR ASP SER GLU SEQRES 8 A 177 GLY GLY PHE GLU SER ASP ALA VAL ALA ILE ALA ASN VAL SEQRES 9 A 177 LEU GLU THR SER THR ALA GLU VAL GLY GLY LYS GLN TYR SEQRES 10 A 177 TYR TYR LEU SER ILE LEU THR ARG THR ALA ASP GLY ASN SEQRES 11 A 177 GLU GLY GLY LYS HIS GLN LEU VAL THR ALA THR VAL ASN SEQRES 12 A 177 ASP GLY LYS LEU TYR ILE CYS LYS ALA GLN ALA GLY ASP SEQRES 13 A 177 LYS ARG TRP PHE LYS GLY ALA LYS LYS PHE VAL GLU ASN SEQRES 14 A 177 THR ALA THR SER PHE SER LEU ALA SEQRES 1 B 177 GLY LYS PRO LYS THR ASP THR ASP PHE GLN THR TYR ASN SEQRES 2 B 177 GLY ASP GLY PHE LYS LEU GLN ILE PRO SER LYS TRP ASN SEQRES 3 B 177 PRO ASN LYS GLU VAL GLU TYR PRO GLY GLN VAL LEU ARG SEQRES 4 B 177 PHE GLU ASP ASN PHE ASP ALA THR SER ASN VAL ILE VAL SEQRES 5 B 177 ALA ILE THR PRO THR ASP LYS LYS SER ILE THR ASP PHE SEQRES 6 B 177 GLY SER PRO GLU GLN PHE LEU SER GLN VAL ASP TYR LEU SEQRES 7 B 177 LEU GLY ARG GLN ALA TYR SER GLY LYS THR ASP SER GLU SEQRES 8 B 177 GLY GLY PHE GLU SER ASP ALA VAL ALA ILE ALA ASN VAL SEQRES 9 B 177 LEU GLU THR SER THR ALA GLU VAL GLY GLY LYS GLN TYR SEQRES 10 B 177 TYR TYR LEU SER ILE LEU THR ARG THR ALA ASP GLY ASN SEQRES 11 B 177 GLU GLY GLY LYS HIS GLN LEU VAL THR ALA THR VAL ASN SEQRES 12 B 177 ASP GLY LYS LEU TYR ILE CYS LYS ALA GLN ALA GLY ASP SEQRES 13 B 177 LYS ARG TRP PHE LYS GLY ALA LYS LYS PHE VAL GLU ASN SEQRES 14 B 177 THR ALA THR SER PHE SER LEU ALA HET GLC A1203 12 HET SO4 A1202 5 HET GLC B1204 12 HET SO4 B1201 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *433(H2 O) HELIX 1 1 SER A 70 GLY A 75 5 6 HELIX 2 2 SER A 76 VAL A 84 1 9 HELIX 3 3 ASP A 85 LEU A 88 5 4 HELIX 4 4 LYS A 166 TRP A 168 5 3 HELIX 5 5 LYS A 173 SER A 182 1 10 HELIX 6 6 SER B 70 GLY B 75 5 6 HELIX 7 7 SER B 76 VAL B 84 1 9 HELIX 8 8 ASP B 85 GLY B 89 5 5 HELIX 9 9 LYS B 166 TRP B 168 5 3 HELIX 10 10 LYS B 173 SER B 182 1 10 SHEET 1 A 3 PHE A 18 ASN A 22 0 SHEET 2 A 3 PHE A 26 PRO A 31 -1 O LEU A 28 N TYR A 21 SHEET 3 A 3 SER A 184 LEU A 185 -1 O SER A 184 N LYS A 27 SHEET 1 B 7 ASN A 35 PRO A 36 0 SHEET 2 B 7 GLN A 45 ASP A 51 -1 O GLU A 50 N ASN A 35 SHEET 3 B 7 ASP A 54 PRO A 65 -1 O VAL A 59 N PHE A 49 SHEET 4 B 7 LYS A 155 GLY A 164 -1 O LEU A 156 N THR A 64 SHEET 5 B 7 LYS A 143 ASN A 152 -1 N HIS A 144 O ALA A 163 SHEET 6 B 7 LYS A 124 ARG A 134 -1 N ILE A 131 O GLN A 145 SHEET 7 B 7 ILE A 110 VAL A 121 -1 N ASN A 112 O LEU A 132 SHEET 1 C 3 PHE B 18 ASN B 22 0 SHEET 2 C 3 PHE B 26 PRO B 31 -1 O LEU B 28 N TYR B 21 SHEET 3 C 3 SER B 184 LEU B 185 -1 O SER B 184 N LYS B 27 SHEET 1 D 7 ASN B 35 PRO B 36 0 SHEET 2 D 7 GLN B 45 ASP B 51 -1 O GLU B 50 N ASN B 35 SHEET 3 D 7 ASP B 54 PRO B 65 -1 O VAL B 59 N PHE B 49 SHEET 4 D 7 LYS B 155 GLY B 164 -1 O LEU B 156 N THR B 64 SHEET 5 D 7 LYS B 143 ASN B 152 -1 N HIS B 144 O ALA B 163 SHEET 6 D 7 LYS B 124 ARG B 134 -1 N ILE B 131 O GLN B 145 SHEET 7 D 7 ILE B 110 VAL B 121 -1 N ASN B 112 O LEU B 132 CRYST1 74.520 90.442 52.635 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018999 0.00000