HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-OCT-03 1V32 TITLE SOLUTION STRUCTURE OF THE SWIB/MDM2 DOMAIN OF THE HYPOTHETICAL PROTEIN TITLE 2 AT5G08430 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RAFL09-47-K03; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SWIB/MDM2 DOMAIN; COMPND 5 SYNONYM: AT5G08430; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RAFL09-47-K03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030128-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SWI-SNF COMPLEX SUBUNIT, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V32 1 REMARK REVDAT 3 02-MAR-22 1V32 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V32 1 VERSN REVDAT 1 24-APR-04 1V32 0 JRNL AUTH M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SWIB/MDM2 DOMAIN OF THE JRNL TITL 2 HYPOTHETICAL PROTEIN AT5G08430 FROM ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V32 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000006144. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM SWIB/MDM2 DOMAIN U-15N, REMARK 210 13C; 20MM PHOSPHATE BUFFER NA; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.815, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 46 H LYS A 50 1.51 REMARK 500 O LYS A 81 H LEU A 85 1.52 REMARK 500 O ILE A 48 H LEU A 53 1.53 REMARK 500 O LEU A 68 H PHE A 72 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 98.19 -179.39 REMARK 500 1 SER A 5 -58.03 -157.13 REMARK 500 1 SER A 6 133.60 177.96 REMARK 500 1 LYS A 8 81.74 63.21 REMARK 500 1 PHE A 12 -178.04 58.20 REMARK 500 1 ILE A 21 -73.04 -53.39 REMARK 500 1 MET A 34 111.85 -38.06 REMARK 500 1 LEU A 54 162.49 -45.03 REMARK 500 1 ASN A 58 106.39 -171.53 REMARK 500 1 LYS A 66 -64.50 -159.40 REMARK 500 1 LYS A 91 -139.91 -81.43 REMARK 500 1 GLU A 92 114.11 67.04 REMARK 500 1 SER A 99 153.32 73.96 REMARK 500 2 SER A 5 159.84 -47.33 REMARK 500 2 PHE A 10 -168.03 -127.30 REMARK 500 2 ASP A 30 109.32 -50.90 REMARK 500 2 THR A 31 47.93 -87.84 REMARK 500 2 SER A 32 -76.01 -76.03 REMARK 500 2 MET A 34 102.11 -39.57 REMARK 500 2 LEU A 54 167.08 -45.65 REMARK 500 2 ASN A 58 105.19 -165.54 REMARK 500 2 LYS A 66 -65.97 -167.44 REMARK 500 2 GLU A 87 -46.74 -160.67 REMARK 500 2 LYS A 91 -141.36 -102.48 REMARK 500 2 GLU A 92 90.11 56.76 REMARK 500 2 ASP A 95 94.50 -49.81 REMARK 500 2 SER A 100 -64.54 -161.99 REMARK 500 3 SER A 2 89.82 53.89 REMARK 500 3 SER A 6 -72.99 66.34 REMARK 500 3 GLN A 19 -92.68 -48.01 REMARK 500 3 ILE A 35 104.60 56.26 REMARK 500 3 ASN A 58 105.27 -168.67 REMARK 500 3 LYS A 66 -56.49 -173.13 REMARK 500 3 LEU A 71 -71.53 -87.46 REMARK 500 3 ARG A 79 -29.61 -39.12 REMARK 500 3 HIS A 89 41.82 -102.37 REMARK 500 3 LYS A 91 -141.55 -100.98 REMARK 500 3 GLU A 92 77.96 50.70 REMARK 500 3 SER A 99 103.42 56.17 REMARK 500 3 SER A 100 117.37 -176.01 REMARK 500 4 SER A 2 102.76 -175.18 REMARK 500 4 SER A 5 109.08 -45.21 REMARK 500 4 LYS A 8 70.11 56.97 REMARK 500 4 PHE A 12 147.37 59.42 REMARK 500 4 GLN A 19 -93.11 -44.38 REMARK 500 4 THR A 31 46.09 -89.49 REMARK 500 4 MET A 34 98.32 -37.93 REMARK 500 4 LEU A 54 167.51 -47.43 REMARK 500 4 ASN A 58 101.95 -165.77 REMARK 500 4 LYS A 66 -49.59 -168.79 REMARK 500 REMARK 500 THIS ENTRY HAS 308 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001006188.1 RELATED DB: TARGETDB DBREF 1V32 A 8 95 UNP Q9FT92 Y5843_ARATH 25 112 SEQADV 1V32 GLY A 1 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 SER A 2 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 SER A 3 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 GLY A 4 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 SER A 5 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 SER A 6 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 GLY A 7 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 SER A 96 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 GLY A 97 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 PRO A 98 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 SER A 99 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 SER A 100 UNP Q9FT92 CLONING ARTIFACT SEQADV 1V32 GLY A 101 UNP Q9FT92 CLONING ARTIFACT SEQRES 1 A 101 GLY SER SER GLY SER SER GLY LYS ARG PHE GLU PHE VAL SEQRES 2 A 101 GLY TRP GLY SER ARG GLN LEU ILE GLU PHE LEU HIS SER SEQRES 3 A 101 LEU GLY LYS ASP THR SER GLU MET ILE SER ARG TYR ASP SEQRES 4 A 101 VAL SER ASP THR ILE ALA LYS TYR ILE SER LYS GLU GLY SEQRES 5 A 101 LEU LEU ASP PRO SER ASN LYS LYS LYS VAL VAL CYS ASP SEQRES 6 A 101 LYS ARG LEU VAL LEU LEU PHE GLY THR ARG THR ILE PHE SEQRES 7 A 101 ARG MET LYS VAL TYR ASP LEU LEU GLU LYS HIS TYR LYS SEQRES 8 A 101 GLU ASN GLN ASP SER GLY PRO SER SER GLY HELIX 1 1 ARG A 18 LEU A 27 1 10 HELIX 2 2 ARG A 37 GLY A 52 1 16 HELIX 3 3 LYS A 66 PHE A 72 1 7 HELIX 4 4 MET A 80 HIS A 89 1 10 SHEET 1 A 2 LYS A 61 VAL A 63 0 SHEET 2 A 2 THR A 76 PHE A 78 -1 O ILE A 77 N VAL A 62 CISPEP 1 GLY A 97 PRO A 98 1 0.08 CISPEP 2 GLY A 97 PRO A 98 2 0.09 CISPEP 3 GLY A 97 PRO A 98 3 -0.03 CISPEP 4 GLY A 97 PRO A 98 4 -0.01 CISPEP 5 GLY A 97 PRO A 98 5 0.00 CISPEP 6 GLY A 97 PRO A 98 6 -0.01 CISPEP 7 GLY A 97 PRO A 98 7 0.02 CISPEP 8 GLY A 97 PRO A 98 8 -0.02 CISPEP 9 GLY A 97 PRO A 98 9 -0.04 CISPEP 10 GLY A 97 PRO A 98 10 0.06 CISPEP 11 GLY A 97 PRO A 98 11 0.01 CISPEP 12 GLY A 97 PRO A 98 12 -0.03 CISPEP 13 GLY A 97 PRO A 98 13 0.02 CISPEP 14 GLY A 97 PRO A 98 14 -0.06 CISPEP 15 GLY A 97 PRO A 98 15 0.04 CISPEP 16 GLY A 97 PRO A 98 16 0.04 CISPEP 17 GLY A 97 PRO A 98 17 -0.03 CISPEP 18 GLY A 97 PRO A 98 18 0.02 CISPEP 19 GLY A 97 PRO A 98 19 0.00 CISPEP 20 GLY A 97 PRO A 98 20 0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1