HEADER ISOMERASE 07-NOV-03 1V40 TITLE FIRST INHIBITOR COMPLEX STRUCTURE OF HUMAN HEMATOPOIETIC PROSTAGLANDIN TITLE 2 D SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GLUTATHIONE-DEPENDENT PGD SYNTHETASE, PROSTAGLANDIN-H2 D- COMPND 5 ISOMERASE, HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE, H-PGDS; COMPND 6 EC: 5.3.99.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE, PGDS, GST, SIGMA-2 CLASS GST, KEYWDS 2 LIGASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.INOUE,Y.OKANO,Y.KADO,K.ARITAKE,D.IRIKURA,N.UODOME,S.KINUGASA, AUTHOR 2 N.OKAZAKI,H.MATSUMURA,Y.KAI,Y.URADE REVDAT 4 25-OCT-23 1V40 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1V40 1 VERSN REVDAT 2 24-FEB-09 1V40 1 VERSN REVDAT 1 07-NOV-04 1V40 0 JRNL AUTH T.INOUE,Y.OKANO,Y.KADO,K.ARITAKE,D.IRIKURA,N.UODOME, JRNL AUTH 2 N.OKAZAKI,S.KINUGASA,H.SHISHITANI,H.MATSUMURA,Y.KAI,Y.URADE JRNL TITL FIRST DETERMINATION OF THE INHIBITOR COMPLEX STRUCTURE OF JRNL TITL 2 HUMAN HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE. JRNL REF J.BIOCHEM.(TOKYO) V. 135 279 2004 JRNL REFN ISSN 0021-924X JRNL PMID 15113825 JRNL DOI 10.1093/JB/MVH033 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 184153.070 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 63141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3194 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9459 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 508 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 254 REMARK 3 SOLVENT ATOMS : 1462 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 1.37000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 39.71 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PACK_016.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PACK_016.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL40B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : A FIXED-EXIT DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 426168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 35.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.03040 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 35.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06300 REMARK 200 R SYM FOR SHELL (I) : 0.27900 REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IYH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, TRIS-HCL, MAGNESIUM CHLORIDE, REMARK 280 GLUTATHIONE, DIOXAN, PH 8.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 3926 O HOH D 3993 2.09 REMARK 500 OE2 GLU A 35 O HOH A 3908 2.14 REMARK 500 CB ALA D 705 O1 O16 D 3801 2.18 REMARK 500 NZ LYS B 273 OE1 GLN C 485 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3 GOL C 3003 O HOH D 3992 1455 1.99 REMARK 500 O HOH C 3682 O HOH D 3992 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 63 107.16 72.23 REMARK 500 TYR A 122 -60.05 -109.80 REMARK 500 GLN B 263 104.53 73.24 REMARK 500 GLN B 309 -14.41 -46.26 REMARK 500 TYR B 322 -62.62 -107.74 REMARK 500 GLN C 463 107.10 73.99 REMARK 500 GLU C 506 122.55 -31.19 REMARK 500 GLN D 663 109.05 74.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A3900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A4129 O REMARK 620 2 HOH A4174 O 85.8 REMARK 620 3 HOH A4290 O 91.4 88.1 REMARK 620 4 HOH D3999 O 91.6 87.7 174.6 REMARK 620 5 HOH D4095 O 85.5 170.9 95.0 89.7 REMARK 620 6 HOH D4096 O 165.8 108.2 90.5 87.6 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B3901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B4013 O REMARK 620 2 HOH B4141 O 89.0 REMARK 620 3 HOH B4142 O 91.5 87.5 REMARK 620 4 HOH C3625 O 97.6 168.8 83.3 REMARK 620 5 HOH C3663 O 82.3 93.0 173.8 96.8 REMARK 620 6 HOH C3812 O 170.6 88.0 97.3 86.8 88.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 3901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 3200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 3400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH C 3600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH D 3800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O16 A 3201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O16 B 3401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O16 C 3601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O16 D 3801 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IYH RELATED DB: PDB REMARK 900 RELATED ID: 1IYI RELATED DB: PDB DBREF 1V40 A 2 199 UNP O60760 PTGD2_HUMAN 1 198 DBREF 1V40 B 202 399 UNP O60760 PTGD2_HUMAN 1 198 DBREF 1V40 C 402 599 UNP O60760 PTGD2_HUMAN 1 198 DBREF 1V40 D 602 799 UNP O60760 PTGD2_HUMAN 1 198 SEQADV 1V40 MET A 144 UNP O60760 ASN 143 CONFLICT SEQADV 1V40 MET B 344 UNP O60760 ASN 143 CONFLICT SEQADV 1V40 MET C 544 UNP O60760 ASN 143 CONFLICT SEQADV 1V40 MET D 744 UNP O60760 ASN 143 CONFLICT SEQRES 1 A 198 PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY ARG SEQRES 2 A 198 ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP ILE SEQRES 3 A 198 GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP PRO SEQRES 4 A 198 GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO ILE SEQRES 5 A 198 LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU ALA SEQRES 6 A 198 ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA GLY SEQRES 7 A 198 ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE VAL SEQRES 8 A 198 ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP ALA SEQRES 9 A 198 GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN GLU SEQRES 10 A 198 LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP LEU SEQRES 11 A 198 ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY MET SEQRES 12 A 198 SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS SER SEQRES 13 A 198 THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP ASN SEQRES 14 A 198 HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN ALA SEQRES 15 A 198 ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO GLN SEQRES 16 A 198 THR LYS LEU SEQRES 1 B 198 PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY ARG SEQRES 2 B 198 ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP ILE SEQRES 3 B 198 GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP PRO SEQRES 4 B 198 GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO ILE SEQRES 5 B 198 LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU ALA SEQRES 6 B 198 ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA GLY SEQRES 7 B 198 ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE VAL SEQRES 8 B 198 ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP ALA SEQRES 9 B 198 GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN GLU SEQRES 10 B 198 LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP LEU SEQRES 11 B 198 ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY MET SEQRES 12 B 198 SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS SER SEQRES 13 B 198 THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP ASN SEQRES 14 B 198 HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN ALA SEQRES 15 B 198 ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO GLN SEQRES 16 B 198 THR LYS LEU SEQRES 1 C 198 PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY ARG SEQRES 2 C 198 ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP ILE SEQRES 3 C 198 GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP PRO SEQRES 4 C 198 GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO ILE SEQRES 5 C 198 LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU ALA SEQRES 6 C 198 ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA GLY SEQRES 7 C 198 ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE VAL SEQRES 8 C 198 ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP ALA SEQRES 9 C 198 GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN GLU SEQRES 10 C 198 LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP LEU SEQRES 11 C 198 ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY MET SEQRES 12 C 198 SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS SER SEQRES 13 C 198 THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP ASN SEQRES 14 C 198 HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN ALA SEQRES 15 C 198 ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO GLN SEQRES 16 C 198 THR LYS LEU SEQRES 1 D 198 PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY ARG SEQRES 2 D 198 ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP ILE SEQRES 3 D 198 GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP PRO SEQRES 4 D 198 GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO ILE SEQRES 5 D 198 LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU ALA SEQRES 6 D 198 ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA GLY SEQRES 7 D 198 ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE VAL SEQRES 8 D 198 ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP ALA SEQRES 9 D 198 GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN GLU SEQRES 10 D 198 LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP LEU SEQRES 11 D 198 ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY MET SEQRES 12 D 198 SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS SER SEQRES 13 D 198 THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP ASN SEQRES 14 D 198 HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN ALA SEQRES 15 D 198 ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO GLN SEQRES 16 D 198 THR LYS LEU HET MG A3900 1 HET GSH A3200 20 HET O16 A3201 34 HET GOL A3001 6 HET GOL A3002 6 HET MG B3901 1 HET GSH B3400 20 HET O16 B3401 34 HET GOL B3006 6 HET GSH C3600 20 HET O16 C3601 34 HET GOL C3003 6 HET GOL C3004 6 HET GSH D3800 20 HET O16 D3801 34 HET GOL D3005 6 HETNAM MG MAGNESIUM ION HETNAM GSH GLUTATHIONE HETNAM O16 3-(1,3-BENZOTHIAZOL-2-YL)-2-(1,4-DIOXO-1,2,3,4- HETNAM 2 O16 TETRAHYDROPHTHALAZIN-6-YL)-5-[(E)-2-PHENYLVINYL]-3H- HETNAM 3 O16 TETRAAZOL-2-IUM HETNAM GOL GLYCEROL HETSYN O16 2-(2F-BENZOTHIAZOLYL)-5-STYRYL-3-(4F-PHTHALHYDRAZIDYL) HETSYN 2 O16 TETRAZOLIUM CHLORIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MG 2(MG 2+) FORMUL 6 GSH 4(C10 H17 N3 O6 S) FORMUL 7 O16 4(C24 H16 N7 O2 S 1+) FORMUL 8 GOL 6(C3 H8 O3) FORMUL 21 HOH *1462(H2 O) HELIX 1 1 ALA A 15 LEU A 25 1 11 HELIX 2 2 ASP A 38 SER A 44 1 7 HELIX 3 3 GLN A 63 LYS A 73 1 11 HELIX 4 4 THR A 81 PHE A 102 1 22 HELIX 5 5 LYS A 108 TYR A 122 1 15 HELIX 6 6 TYR A 122 GLY A 136 1 15 HELIX 7 7 THR A 147 LYS A 164 1 18 HELIX 8 8 HIS A 171 ILE A 184 1 14 HELIX 9 9 ILE A 184 ARG A 194 1 11 HELIX 10 10 ALA B 215 ASP B 226 1 12 HELIX 11 11 ASP B 238 SER B 244 1 7 HELIX 12 12 GLN B 263 LYS B 273 1 11 HELIX 13 13 THR B 281 SER B 300 1 20 HELIX 14 14 LYS B 308 TYR B 322 1 15 HELIX 15 15 TYR B 322 GLY B 336 1 15 HELIX 16 16 THR B 347 LYS B 364 1 18 HELIX 17 17 HIS B 371 ALA B 383 1 13 HELIX 18 18 ILE B 384 ARG B 394 1 11 HELIX 19 19 ALA C 415 ASP C 426 1 12 HELIX 20 20 GLU C 435 ALA C 437 5 3 HELIX 21 21 ASP C 438 SER C 444 1 7 HELIX 22 22 GLN C 463 LYS C 473 1 11 HELIX 23 23 THR C 481 SER C 500 1 20 HELIX 24 24 LYS C 508 ASN C 523 1 16 HELIX 25 25 ASN C 523 GLY C 536 1 14 HELIX 26 26 THR C 547 LYS C 564 1 18 HELIX 27 27 HIS C 571 ILE C 584 1 14 HELIX 28 28 ILE C 584 ARG C 594 1 11 HELIX 29 29 ARG D 612 ARG D 614 5 3 HELIX 30 30 ALA D 615 ASP D 626 1 12 HELIX 31 31 GLU D 635 ALA D 637 5 3 HELIX 32 32 ASP D 638 SER D 644 1 7 HELIX 33 33 GLN D 663 LYS D 673 1 11 HELIX 34 34 THR D 681 SER D 700 1 20 HELIX 35 35 LYS D 708 ASN D 723 1 16 HELIX 36 36 ASN D 723 GLY D 736 1 14 HELIX 37 37 THR D 747 LYS D 764 1 18 HELIX 38 38 HIS D 771 ILE D 784 1 14 HELIX 39 39 ILE D 784 ARG D 794 1 11 SHEET 1 A 4 GLU A 30 ILE A 34 0 SHEET 2 A 4 TYR A 4 PHE A 9 1 N TYR A 8 O ILE A 34 SHEET 3 A 4 ILE A 53 VAL A 56 -1 O GLU A 55 N LYS A 5 SHEET 4 A 4 LEU A 59 HIS A 62 -1 O LEU A 59 N VAL A 56 SHEET 1 B 4 GLU B 230 ILE B 234 0 SHEET 2 B 4 TYR B 204 PHE B 209 1 N TYR B 208 O ILE B 234 SHEET 3 B 4 ILE B 253 VAL B 256 -1 O GLU B 255 N LYS B 205 SHEET 4 B 4 LEU B 259 HIS B 262 -1 O LEU B 259 N VAL B 256 SHEET 1 C 4 GLU C 430 ILE C 434 0 SHEET 2 C 4 TYR C 404 PHE C 409 1 N LEU C 406 O GLU C 430 SHEET 3 C 4 ILE C 453 VAL C 456 -1 O GLU C 455 N LYS C 405 SHEET 4 C 4 LEU C 459 HIS C 462 -1 O LEU C 459 N VAL C 456 SHEET 1 D 4 GLU D 630 ILE D 634 0 SHEET 2 D 4 TYR D 604 PHE D 609 1 N LEU D 606 O GLU D 630 SHEET 3 D 4 ILE D 653 VAL D 656 -1 O GLU D 655 N LYS D 605 SHEET 4 D 4 LEU D 659 HIS D 662 -1 O LEU D 659 N VAL D 656 LINK CE1 PHE A 9 O2 O16 A3201 1555 1555 1.72 LINK CB TRP C 504 C22 O16 C3601 1555 1555 1.89 LINK CB ALA C 505 O1 O16 C3601 1555 1555 1.76 LINK MG MG A3900 O HOH A4129 1555 1555 1.99 LINK MG MG A3900 O HOH A4174 1555 1555 2.17 LINK MG MG A3900 O HOH A4290 1555 1555 1.99 LINK MG MG A3900 O HOH D3999 1555 1555 2.01 LINK MG MG A3900 O HOH D4095 1555 1555 2.00 LINK MG MG A3900 O HOH D4096 1555 1555 2.03 LINK MG MG B3901 O HOH B4013 1555 1555 1.95 LINK MG MG B3901 O HOH B4141 1555 1555 2.17 LINK MG MG B3901 O HOH B4142 1555 1555 2.04 LINK MG MG B3901 O HOH C3625 1555 1555 2.11 LINK MG MG B3901 O HOH C3663 1555 1555 1.98 LINK MG MG B3901 O HOH C3812 1555 1555 2.23 CISPEP 1 ILE A 51 PRO A 52 0 -0.37 CISPEP 2 ILE B 251 PRO B 252 0 -0.46 CISPEP 3 ILE C 451 PRO C 452 0 3.39 CISPEP 4 ILE D 651 PRO D 652 0 1.23 SITE 1 AC1 6 HOH A4129 HOH A4174 HOH A4290 HOH D3999 SITE 2 AC1 6 HOH D4095 HOH D4096 SITE 1 AC2 6 HOH B4013 HOH B4141 HOH B4142 HOH C3625 SITE 2 AC2 6 HOH C3663 HOH C3812 SITE 1 AC3 14 TYR A 8 ARG A 14 TRP A 39 LYS A 43 SITE 2 AC3 14 LYS A 50 ILE A 51 GLN A 63 SER A 64 SITE 3 AC3 14 O16 A3201 HOH A3953 HOH A3959 HOH A4117 SITE 4 AC3 14 HOH A4289 ASP D 697 SITE 1 AC4 13 TYR B 208 ARG B 214 TRP B 239 LYS B 243 SITE 2 AC4 13 LYS B 250 ILE B 251 GLN B 263 SER B 264 SITE 3 AC4 13 O16 B3401 HOH B3950 HOH B4010 HOH B4155 SITE 4 AC4 13 ASP C 497 SITE 1 AC5 14 ASP B 297 TYR C 408 ARG C 414 TRP C 439 SITE 2 AC5 14 LYS C 443 LYS C 450 ILE C 451 GLN C 463 SITE 3 AC5 14 SER C 464 O16 C3601 HOH C3623 HOH C3664 SITE 4 AC5 14 HOH C3665 HOH C3852 SITE 1 AC6 13 ASP A 97 TYR D 608 ARG D 614 TRP D 639 SITE 2 AC6 13 LYS D 643 LYS D 650 ILE D 651 GLN D 663 SITE 3 AC6 13 SER D 664 HOH D3822 HOH D3867 HOH D3872 SITE 4 AC6 13 HOH D4058 SITE 1 AC7 9 PHE A 9 ARG A 14 MET A 99 TRP A 104 SITE 2 AC7 9 ALA A 105 TYR A 152 CYS A 156 LEU A 199 SITE 3 AC7 9 GSH A3200 SITE 1 AC8 9 PHE B 209 GLY B 213 MET B 299 TRP B 304 SITE 2 AC8 9 ALA B 305 TYR B 352 CYS B 356 GSH B3400 SITE 3 AC8 9 HOH B3917 SITE 1 AC9 11 PHE C 409 GLY C 413 ARG C 414 ASP C 496 SITE 2 AC9 11 MET C 499 TRP C 504 ALA C 505 TYR C 552 SITE 3 AC9 11 CYS C 556 LEU C 599 GSH C3600 SITE 1 BC1 10 HOH A4258 GLY D 613 ARG D 614 ASP D 696 SITE 2 BC1 10 MET D 699 TRP D 704 ALA D 705 TYR D 752 SITE 3 BC1 10 LEU D 799 HOH D4090 SITE 1 BC2 10 LYS A 43 PHE A 48 GLY A 49 HOH A3991 SITE 2 BC2 10 HOH A4119 HOH A4126 HOH A4287 HIS D 726 SITE 3 BC2 10 ASP D 730 HOH D3804 SITE 1 BC3 11 GLU A 84 TYR A 134 ARG A 138 LEU A 141 SITE 2 BC3 11 ILE A 142 GLY A 143 HOH A4029 HOH A4142 SITE 3 BC3 11 HOH A4260 HOH A4311 TYR D 722 SITE 1 BC4 10 GLN C 428 TYR C 429 GLN D 796 THR D 797 SITE 2 BC4 10 LYS D 798 HOH D3904 HOH D3905 HOH D3991 SITE 3 BC4 10 HOH D3992 HOH D3993 SITE 1 BC5 9 THR C 597 HOH C3735 HOH C3737 HOH C3741 SITE 2 BC5 9 HOH C3744 HOH C3745 GLN D 628 TYR D 629 SITE 3 BC5 9 GOL D3005 SITE 1 BC6 7 LYS C 598 GOL C3004 GLN D 628 TYR D 629 SITE 2 BC6 7 TRP D 790 HOH D3891 HOH D3892 SITE 1 BC7 2 GLN B 228 TYR B 229 CRYST1 47.288 49.237 94.526 93.25 89.98 90.01 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021147 0.000004 -0.000007 0.00000 SCALE2 0.000000 0.020310 0.001154 0.00000 SCALE3 0.000000 0.000000 0.010596 0.00000