HEADER BLOOD CLOTTING 14-NOV-03 1V4L TITLE CRYSTAL STRUCTURE OF A PLATELET AGGLUTINATION FACTOR ISOLATED FROM THE TITLE 2 VENOM OF TAIWAN HABU (TRIMERESURUS MUCROSQUAMATUS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCROCETIN ALPHA CHAIN; COMPND 3 CHAIN: A, C, E; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MUCROCETIN BETA CHAIN; COMPND 6 CHAIN: B, D, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTOBOTHROPS MUCROSQUAMATUS; SOURCE 3 ORGANISM_TAXID: 103944; SOURCE 4 SECRETION: SNAKE VENOM; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: PROTOBOTHROPS MUCROSQUAMATUS; SOURCE 7 ORGANISM_TAXID: 103944; SOURCE 8 SECRETION: SNAKE VENOM KEYWDS LECTIN-LIKE, SQUARE-SHAPED RING, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR K.-F.HUANG,T.-P.KO,A.H.-J.WANG REVDAT 5 25-OCT-23 1V4L 1 REMARK REVDAT 4 13-JUL-11 1V4L 1 VERSN REVDAT 3 24-FEB-09 1V4L 1 VERSN REVDAT 2 21-JUN-05 1V4L 1 JRNL REVDAT 1 02-DEC-03 1V4L 0 JRNL AUTH K.F.HUANG,T.P.KO,C.C.HUNG,J.CHU,A.H.WANG,S.H.CHIOU JRNL TITL CRYSTAL STRUCTURE OF A PLATELET-AGGLUTINATING FACTOR JRNL TITL 2 ISOLATED FROM THE VENOM OF TAIWAN HABU (TRIMERESURUS JRNL TITL 3 MUCROSQUAMATUS). JRNL REF BIOCHEM.J. V. 378 399 2004 JRNL REFN ISSN 0264-6021 JRNL PMID 14613481 JRNL DOI 10.1042/BJ20031507 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.4 REMARK 3 NUMBER OF REFLECTIONS : 28059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1465 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 105 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 536 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.680 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL17B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30509 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1C3A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1,6-HEXANEDIOL, SODIUM CITRATE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.93300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 180.40750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 59.93300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 180.40750 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.93300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 180.40750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 59.93300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 180.40750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.93300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 180.40750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.93300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 180.40750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 59.93300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 180.40750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.93300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.93300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 180.40750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 519 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 815 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 912 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 915 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 982 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 562 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 744 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 277 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 5 132.10 -30.73 REMARK 500 ASP A 12 -109.54 56.37 REMARK 500 LYS A 37 -78.73 -52.26 REMARK 500 THR A 38 17.65 -55.01 REMARK 500 SER A 46 156.58 175.21 REMARK 500 GLU A 59 -98.30 -83.37 REMARK 500 LYS A 60 -34.74 -22.60 REMARK 500 THR A 63 150.00 -42.27 REMARK 500 PHE A 65 -175.69 172.61 REMARK 500 ASN A 76 145.51 -35.00 REMARK 500 ARG A 82 84.11 157.16 REMARK 500 ALA A 88 -39.07 78.75 REMARK 500 SER A 89 147.23 -37.74 REMARK 500 ASN A 95 43.72 -175.68 REMARK 500 GLN A 99 1.13 -64.91 REMARK 500 ASP B 212 -122.13 52.94 REMARK 500 ILE B 260 -98.21 -75.89 REMARK 500 LEU B 261 -5.91 -37.52 REMARK 500 LYS B 262 -117.20 53.16 REMARK 500 ASP B 264 -149.30 -146.44 REMARK 500 ASN B 272 74.03 31.50 REMARK 500 ASP B 288 -82.37 -97.04 REMARK 500 TRP B 292 154.95 -44.51 REMARK 500 GLN B 324 108.52 -58.54 REMARK 500 ASP C 12 -112.56 73.66 REMARK 500 GLN C 17 136.73 -170.98 REMARK 500 LYS C 23 144.68 -173.11 REMARK 500 TRP C 25 -75.75 -51.37 REMARK 500 VAL C 36 5.73 -69.38 REMARK 500 LYS C 37 -47.13 61.22 REMARK 500 THR C 38 7.56 -68.41 REMARK 500 THR C 63 -159.38 -70.16 REMARK 500 ALA C 88 -18.49 75.93 REMARK 500 VAL C 91 74.18 -103.89 REMARK 500 ASN C 95 48.08 -173.88 REMARK 500 TYR D 211 141.34 175.63 REMARK 500 ASP D 212 -114.43 42.64 REMARK 500 SER D 255 20.47 -63.04 REMARK 500 LYS D 256 -20.20 -140.49 REMARK 500 ILE D 260 -115.21 -65.82 REMARK 500 LEU D 261 108.87 -37.24 REMARK 500 LYS D 262 -70.10 -67.88 REMARK 500 ASP D 264 -138.89 -166.55 REMARK 500 ASN D 272 66.09 33.54 REMARK 500 ALA D 291 62.12 -113.38 REMARK 500 THR D 300 -154.21 -129.27 REMARK 500 SER D 301 130.58 -173.10 REMARK 500 SER D 315 175.95 -57.91 REMARK 500 PHE E 2 127.54 -172.95 REMARK 500 ILE E 5 134.29 -27.73 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1V4L A 1 135 UNP Q6TPH0 Q6TPH0_TRIMU 24 158 DBREF 1V4L C 1 135 UNP Q6TPH0 Q6TPH0_TRIMU 24 158 DBREF 1V4L E 1 135 UNP Q6TPH0 Q6TPH0_TRIMU 24 158 DBREF 1V4L B 201 325 UNP Q6TPG9 Q6TPG9_TRIMU 24 148 DBREF 1V4L D 201 325 UNP Q6TPG9 Q6TPG9_TRIMU 24 148 DBREF 1V4L F 201 325 UNP Q6TPG9 Q6TPG9_TRIMU 24 148 SEQADV 1V4L MET B 223 UNP Q6TPG9 ILE 46 SEE REMARK 999 SEQADV 1V4L MET D 223 UNP Q6TPG9 ILE 46 SEE REMARK 999 SEQADV 1V4L MET F 223 UNP Q6TPG9 ILE 46 SEE REMARK 999 SEQRES 1 A 135 ASP PHE ASP CYS ILE PRO GLY TRP SER ALA TYR ASP ARG SEQRES 2 A 135 TYR CYS TYR GLN ALA PHE SER GLU PRO LYS ASN TRP GLU SEQRES 3 A 135 ASP ALA GLU SER PHE CYS GLU GLU GLY VAL LYS THR SER SEQRES 4 A 135 HIS LEU VAL SER ILE GLU SER SER GLY GLU GLY ASP PHE SEQRES 5 A 135 VAL ALA GLN LEU VAL ALA GLU LYS ILE LYS THR SER PHE SEQRES 6 A 135 GLN TYR VAL TRP ILE GLY LEU ARG ILE GLN ASN LYS GLU SEQRES 7 A 135 GLN GLN CYS ARG SER GLU TRP SER ASP ALA SER SER VAL SEQRES 8 A 135 ASN TYR GLU ASN LEU TYR LYS GLN SER SER LYS LYS CYS SEQRES 9 A 135 TYR ALA LEU LYS LYS GLY THR GLU LEU ARG THR TRP PHE SEQRES 10 A 135 ASN VAL TYR CYS GLY ARG GLU ASN PRO PHE VAL CYS LYS SEQRES 11 A 135 TYR THR PRO GLU CYS SEQRES 1 B 125 GLY PHE CYS CYS PRO LEU GLY TRP SER SER TYR ASP GLU SEQRES 2 B 125 HIS CYS TYR GLN VAL PHE GLN GLN LYS MET ASN TRP GLU SEQRES 3 B 125 ASP ALA GLU LYS PHE CYS THR GLN GLN HIS ARG GLY SER SEQRES 4 B 125 HIS LEU VAL SER PHE HIS SER SER GLU GLU VAL ASP PHE SEQRES 5 B 125 VAL VAL SER LYS THR SER PRO ILE LEU LYS HIS ASP PHE SEQRES 6 B 125 VAL TRP MET GLY LEU SER ASN VAL TRP ASN GLU CYS ALA SEQRES 7 B 125 LYS GLU TRP SER ASP GLY THR LYS LEU ASP TYR LYS ALA SEQRES 8 B 125 TRP SER GLY GLN SER ASP CYS ILE THR SER LYS THR THR SEQRES 9 B 125 ASP ASN GLN TRP LEU SER MET ASP CYS SER SER LYS ARG SEQRES 10 B 125 TYR VAL VAL CYS LYS PHE GLN ALA SEQRES 1 C 135 ASP PHE ASP CYS ILE PRO GLY TRP SER ALA TYR ASP ARG SEQRES 2 C 135 TYR CYS TYR GLN ALA PHE SER GLU PRO LYS ASN TRP GLU SEQRES 3 C 135 ASP ALA GLU SER PHE CYS GLU GLU GLY VAL LYS THR SER SEQRES 4 C 135 HIS LEU VAL SER ILE GLU SER SER GLY GLU GLY ASP PHE SEQRES 5 C 135 VAL ALA GLN LEU VAL ALA GLU LYS ILE LYS THR SER PHE SEQRES 6 C 135 GLN TYR VAL TRP ILE GLY LEU ARG ILE GLN ASN LYS GLU SEQRES 7 C 135 GLN GLN CYS ARG SER GLU TRP SER ASP ALA SER SER VAL SEQRES 8 C 135 ASN TYR GLU ASN LEU TYR LYS GLN SER SER LYS LYS CYS SEQRES 9 C 135 TYR ALA LEU LYS LYS GLY THR GLU LEU ARG THR TRP PHE SEQRES 10 C 135 ASN VAL TYR CYS GLY ARG GLU ASN PRO PHE VAL CYS LYS SEQRES 11 C 135 TYR THR PRO GLU CYS SEQRES 1 D 125 GLY PHE CYS CYS PRO LEU GLY TRP SER SER TYR ASP GLU SEQRES 2 D 125 HIS CYS TYR GLN VAL PHE GLN GLN LYS MET ASN TRP GLU SEQRES 3 D 125 ASP ALA GLU LYS PHE CYS THR GLN GLN HIS ARG GLY SER SEQRES 4 D 125 HIS LEU VAL SER PHE HIS SER SER GLU GLU VAL ASP PHE SEQRES 5 D 125 VAL VAL SER LYS THR SER PRO ILE LEU LYS HIS ASP PHE SEQRES 6 D 125 VAL TRP MET GLY LEU SER ASN VAL TRP ASN GLU CYS ALA SEQRES 7 D 125 LYS GLU TRP SER ASP GLY THR LYS LEU ASP TYR LYS ALA SEQRES 8 D 125 TRP SER GLY GLN SER ASP CYS ILE THR SER LYS THR THR SEQRES 9 D 125 ASP ASN GLN TRP LEU SER MET ASP CYS SER SER LYS ARG SEQRES 10 D 125 TYR VAL VAL CYS LYS PHE GLN ALA SEQRES 1 E 135 ASP PHE ASP CYS ILE PRO GLY TRP SER ALA TYR ASP ARG SEQRES 2 E 135 TYR CYS TYR GLN ALA PHE SER GLU PRO LYS ASN TRP GLU SEQRES 3 E 135 ASP ALA GLU SER PHE CYS GLU GLU GLY VAL LYS THR SER SEQRES 4 E 135 HIS LEU VAL SER ILE GLU SER SER GLY GLU GLY ASP PHE SEQRES 5 E 135 VAL ALA GLN LEU VAL ALA GLU LYS ILE LYS THR SER PHE SEQRES 6 E 135 GLN TYR VAL TRP ILE GLY LEU ARG ILE GLN ASN LYS GLU SEQRES 7 E 135 GLN GLN CYS ARG SER GLU TRP SER ASP ALA SER SER VAL SEQRES 8 E 135 ASN TYR GLU ASN LEU TYR LYS GLN SER SER LYS LYS CYS SEQRES 9 E 135 TYR ALA LEU LYS LYS GLY THR GLU LEU ARG THR TRP PHE SEQRES 10 E 135 ASN VAL TYR CYS GLY ARG GLU ASN PRO PHE VAL CYS LYS SEQRES 11 E 135 TYR THR PRO GLU CYS SEQRES 1 F 125 GLY PHE CYS CYS PRO LEU GLY TRP SER SER TYR ASP GLU SEQRES 2 F 125 HIS CYS TYR GLN VAL PHE GLN GLN LYS MET ASN TRP GLU SEQRES 3 F 125 ASP ALA GLU LYS PHE CYS THR GLN GLN HIS ARG GLY SER SEQRES 4 F 125 HIS LEU VAL SER PHE HIS SER SER GLU GLU VAL ASP PHE SEQRES 5 F 125 VAL VAL SER LYS THR SER PRO ILE LEU LYS HIS ASP PHE SEQRES 6 F 125 VAL TRP MET GLY LEU SER ASN VAL TRP ASN GLU CYS ALA SEQRES 7 F 125 LYS GLU TRP SER ASP GLY THR LYS LEU ASP TYR LYS ALA SEQRES 8 F 125 TRP SER GLY GLN SER ASP CYS ILE THR SER LYS THR THR SEQRES 9 F 125 ASP ASN GLN TRP LEU SER MET ASP CYS SER SER LYS ARG SEQRES 10 F 125 TYR VAL VAL CYS LYS PHE GLN ALA FORMUL 7 HOH *536(H2 O) HELIX 1 1 ASN A 24 GLY A 35 1 12 HELIX 2 2 SER A 46 GLU A 59 1 14 HELIX 3 3 TYR A 97 SER A 101 5 5 HELIX 4 4 ASN B 224 HIS B 236 1 13 HELIX 5 5 SER B 246 SER B 258 1 13 HELIX 6 6 ASN C 24 GLY C 35 1 12 HELIX 7 7 SER C 46 ILE C 61 1 16 HELIX 8 8 TYR C 97 SER C 101 5 5 HELIX 9 9 ASN D 224 HIS D 236 1 13 HELIX 10 10 SER D 247 SER D 258 1 12 HELIX 11 11 TRP E 25 CYS E 32 1 8 HELIX 12 12 SER E 46 ILE E 61 1 16 HELIX 13 13 ASN F 224 HIS F 236 1 13 HELIX 14 14 SER F 246 SER F 258 1 13 SHEET 1 A 4 SER A 9 TYR A 11 0 SHEET 2 A 4 TYR A 14 LYS A 23 -1 O TYR A 16 N SER A 9 SHEET 3 A 4 ASN A 125 TYR A 131 -1 O ASN A 125 N LYS A 23 SHEET 4 A 4 SER A 39 LEU A 41 -1 N HIS A 40 O LYS A 130 SHEET 1 B 4 PHE A 117 VAL A 119 0 SHEET 2 B 4 CYS A 104 LYS A 108 -1 N ALA A 106 O PHE A 117 SHEET 3 B 4 TYR A 67 ILE A 74 -1 N VAL A 68 O LEU A 107 SHEET 4 B 4 LYS B 279 TRP B 281 -1 O GLU B 280 N ARG A 73 SHEET 1 C 4 SER B 209 TYR B 211 0 SHEET 2 C 4 HIS B 214 MET B 223 -1 O HIS B 214 N TYR B 211 SHEET 3 C 4 ARG B 317 GLN B 324 -1 O ARG B 317 N MET B 223 SHEET 4 C 4 SER B 239 LEU B 241 -1 N HIS B 240 O LYS B 322 SHEET 1 D 3 PHE B 265 TRP B 267 0 SHEET 2 D 3 ASP B 297 LYS B 302 -1 O SER B 301 N VAL B 266 SHEET 3 D 3 TRP B 308 ASP B 312 -1 O LEU B 309 N THR B 300 SHEET 1 E 4 SER C 9 TYR C 11 0 SHEET 2 E 4 TYR C 14 LYS C 23 -1 O TYR C 16 N SER C 9 SHEET 3 E 4 ASN C 125 TYR C 131 -1 O CYS C 129 N GLN C 17 SHEET 4 E 4 SER C 39 LEU C 41 -1 N HIS C 40 O LYS C 130 SHEET 1 F 4 TRP C 116 VAL C 119 0 SHEET 2 F 4 CYS C 104 LYS C 108 -1 N ALA C 106 O PHE C 117 SHEET 3 F 4 TYR C 67 ILE C 74 -1 N VAL C 68 O LEU C 107 SHEET 4 F 4 LYS D 279 TRP D 281 -1 O GLU D 280 N ARG C 73 SHEET 1 G 4 SER D 209 TYR D 211 0 SHEET 2 G 4 HIS D 214 MET D 223 -1 O HIS D 214 N TYR D 211 SHEET 3 G 4 ARG D 317 GLN D 324 -1 O PHE D 323 N CYS D 215 SHEET 4 G 4 HIS D 240 LEU D 241 -1 N HIS D 240 O LYS D 322 SHEET 1 H 2 ASP D 297 ILE D 299 0 SHEET 2 H 2 SER D 310 ASP D 312 -1 O MET D 311 N CYS D 298 SHEET 1 I 4 SER E 9 TYR E 11 0 SHEET 2 I 4 TYR E 14 ASN E 24 -1 O TYR E 16 N SER E 9 SHEET 3 I 4 GLU E 124 TYR E 131 -1 O TYR E 131 N CYS E 15 SHEET 4 I 4 SER E 39 LEU E 41 -1 N HIS E 40 O LYS E 130 SHEET 1 J 4 TRP E 116 VAL E 119 0 SHEET 2 J 4 CYS E 104 LYS E 108 -1 N ALA E 106 O PHE E 117 SHEET 3 J 4 TYR E 67 ILE E 74 -1 N VAL E 68 O LEU E 107 SHEET 4 J 4 LYS F 279 TRP F 281 -1 O GLU F 280 N ARG E 73 SHEET 1 K 4 SER F 209 TYR F 211 0 SHEET 2 K 4 HIS F 214 MET F 223 -1 O TYR F 216 N SER F 209 SHEET 3 K 4 ARG F 317 GLN F 324 -1 O PHE F 323 N CYS F 215 SHEET 4 K 4 HIS F 240 LEU F 241 -1 N HIS F 240 O LYS F 322 SHEET 1 L 6 SER F 209 TYR F 211 0 SHEET 2 L 6 HIS F 214 MET F 223 -1 O TYR F 216 N SER F 209 SHEET 3 L 6 ARG F 317 GLN F 324 -1 O PHE F 323 N CYS F 215 SHEET 4 L 6 PHE F 265 TRP F 267 1 N TRP F 267 O TYR F 318 SHEET 5 L 6 ASP F 297 LYS F 302 -1 O SER F 301 N VAL F 266 SHEET 6 L 6 TRP F 308 ASP F 312 -1 O MET F 311 N CYS F 298 SSBOND 1 CYS A 4 CYS A 15 1555 1555 2.02 SSBOND 2 CYS A 32 CYS A 129 1555 1555 2.03 SSBOND 3 CYS A 81 CYS B 277 1555 1555 2.03 SSBOND 4 CYS A 104 CYS A 121 1555 1555 2.04 SSBOND 5 CYS A 135 CYS B 203 1555 3555 2.98 SSBOND 6 CYS B 204 CYS B 215 1555 1555 2.04 SSBOND 7 CYS B 232 CYS B 321 1555 1555 2.03 SSBOND 8 CYS B 298 CYS B 313 1555 1555 2.03 SSBOND 9 CYS C 4 CYS C 15 1555 1555 2.02 SSBOND 10 CYS C 32 CYS C 129 1555 1555 2.03 SSBOND 11 CYS C 81 CYS D 277 1555 1555 2.01 SSBOND 12 CYS C 104 CYS C 121 1555 1555 2.04 SSBOND 13 CYS C 135 CYS D 203 1555 4555 2.74 SSBOND 14 CYS D 204 CYS D 215 1555 1555 2.04 SSBOND 15 CYS D 232 CYS D 321 1555 1555 2.03 SSBOND 16 CYS D 298 CYS D 313 1555 1555 2.03 SSBOND 17 CYS E 4 CYS E 15 1555 1555 2.02 SSBOND 18 CYS E 32 CYS E 129 1555 1555 2.03 SSBOND 19 CYS E 81 CYS F 277 1555 1555 2.03 SSBOND 20 CYS E 104 CYS E 121 1555 1555 2.05 SSBOND 21 CYS E 135 CYS F 203 1555 4555 2.99 SSBOND 22 CYS F 204 CYS F 215 1555 1555 2.04 SSBOND 23 CYS F 232 CYS F 321 1555 1555 2.03 SSBOND 24 CYS F 298 CYS F 313 1555 1555 2.03 CRYST1 119.866 119.866 360.815 90.00 90.00 90.00 I 4 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002772 0.00000