HEADER GENE REGULATION 17-NOV-03 1V4R TITLE SOLUTION STRUCTURE OF STREPTMYCAL REPRESSOR TRAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES; SOURCE 3 ORGANISM_TAXID: 1883; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A, PSN22 KEYWDS HELIX-TURN-HELIX, WINGED-HELIX, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.TANAKA,C.KOMATSU,K.KOBAYASHI,M.SUGAI,M.KATAOKA,T.KOHNO REVDAT 4 27-DEC-23 1V4R 1 REMARK REVDAT 3 02-MAR-22 1V4R 1 REMARK REVDAT 2 24-FEB-09 1V4R 1 VERSN REVDAT 1 01-MAR-05 1V4R 0 JRNL AUTH T.TANAKA,C.KOMATSU,K.KOBAYASHI,M.SUGAI,M.KATAOKA,T.KOHNO JRNL TITL SOLUTION STRUCTURE OF STREPTMYCAL REPRESSOR TRAR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ANSIG 3.3, X-PLOR 3.1 REMARK 3 AUTHORS : KRAULIS, P (ANSIG), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V4R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006204. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM TRAR U-15N,13C; 50MM REMARK 210 PHOSPHATE BUFFER NA, 100MM NACL; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA 2.7, X-PLOR 3.1, XWINNMR REMARK 210 2.6 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 MATRIX RELAXATION, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA LEU A 57 H GLY A 61 1.25 REMARK 500 HA ARG A 40 HE1 PHE A 43 1.27 REMARK 500 O ILE A 39 H PHE A 43 1.56 REMARK 500 HH11 ARG A 19 OE2 GLU A 60 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 23 -75.93 -75.88 REMARK 500 1 GLU A 26 -15.20 111.79 REMARK 500 1 LEU A 27 58.50 -112.79 REMARK 500 1 LEU A 62 37.27 73.20 REMARK 500 1 ALA A 68 -63.89 -142.23 REMARK 500 1 LYS A 75 -85.59 -98.85 REMARK 500 1 VAL A 79 79.28 -55.30 REMARK 500 1 ARG A 88 111.23 66.53 REMARK 500 2 LEU A 62 66.70 63.04 REMARK 500 2 ALA A 68 -60.73 -160.87 REMARK 500 2 LYS A 75 88.55 -68.51 REMARK 500 2 ILE A 78 105.52 -55.70 REMARK 500 2 VAL A 79 72.00 65.85 REMARK 500 3 GLU A 7 -74.41 -99.66 REMARK 500 3 LEU A 33 109.69 -57.52 REMARK 500 3 ALA A 68 -16.69 -160.71 REMARK 500 3 LYS A 75 49.01 -84.87 REMARK 500 3 VAL A 79 43.50 33.90 REMARK 500 3 ARG A 88 -164.71 -76.98 REMARK 500 4 LEU A 62 80.33 69.74 REMARK 500 4 VAL A 79 91.60 -52.49 REMARK 500 4 LEU A 86 -89.88 57.18 REMARK 500 4 MET A 89 -55.51 70.23 REMARK 500 5 GLU A 7 -157.61 -86.95 REMARK 500 5 LEU A 27 72.77 -109.16 REMARK 500 5 LEU A 69 -62.10 -92.05 REMARK 500 5 LYS A 75 78.67 -69.18 REMARK 500 5 THR A 81 -54.88 -158.87 REMARK 500 5 LEU A 86 -81.65 59.45 REMARK 500 5 MET A 89 108.65 -58.13 REMARK 500 5 LYS A 91 79.38 -118.31 REMARK 500 5 MET A 94 52.83 -106.19 REMARK 500 6 LYS A 23 -81.04 -61.09 REMARK 500 6 LEU A 62 80.05 75.16 REMARK 500 6 ALA A 68 -68.30 -149.25 REMARK 500 6 LYS A 75 38.53 -79.22 REMARK 500 6 VAL A 79 74.82 -65.24 REMARK 500 6 LEU A 86 93.96 -68.98 REMARK 500 6 LYS A 87 -44.39 -161.99 REMARK 500 7 GLU A 7 -77.44 -69.33 REMARK 500 7 LYS A 23 -79.64 -66.06 REMARK 500 7 GLU A 26 9.79 59.53 REMARK 500 7 ALA A 68 -47.26 -160.23 REMARK 500 7 LYS A 75 92.73 -66.63 REMARK 500 8 PRO A 2 36.39 -86.22 REMARK 500 8 GLU A 7 -89.45 -93.23 REMARK 500 8 LEU A 62 78.28 63.29 REMARK 500 8 SER A 64 77.21 147.90 REMARK 500 8 THR A 81 -28.00 -142.53 REMARK 500 8 LYS A 87 -10.46 -157.91 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 35 VAL A 36 7 142.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 1V4R A -1 100 PDB 1V4R 1V4R -1 100 SEQRES 1 A 102 GLY PRO MET PRO TYR LYS ALA PRO GLU GLY LYS GLY TYR SEQRES 2 A 102 ALA ASP VAL ALA THR HIS PHE ARG THR LEU ILE LYS SER SEQRES 3 A 102 GLY GLU LEU ALA PRO GLY ASP THR LEU PRO SER VAL ALA SEQRES 4 A 102 ASP ILE ARG ALA GLN PHE GLY VAL ALA ALA LYS THR VAL SEQRES 5 A 102 SER ARG ALA LEU ALA VAL LEU LYS SER GLU GLY LEU VAL SEQRES 6 A 102 SER SER ARG GLY ALA LEU GLY THR VAL VAL GLU LYS ASN SEQRES 7 A 102 PRO ILE VAL ILE THR GLY ALA ASP ARG LEU LYS ARG MET SEQRES 8 A 102 GLU LYS ASN GLY MET ARG TYR ALA PRO GLY GLU HELIX 1 1 GLY A 10 ILE A 22 1 13 HELIX 2 2 SER A 35 PHE A 43 1 9 HELIX 3 3 LYS A 48 LEU A 54 1 7 HELIX 4 4 GLY A 82 ARG A 88 1 7 SHEET 1 A 2 SER A 64 ARG A 66 0 SHEET 2 A 2 GLY A 70 VAL A 72 -1 N GLY A 70 O ARG A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1