HEADER ISOMERASE 20-NOV-03 1V52 OBSLTE 25-APR-06 1V52 2DJK TITLE SOLUTION STRUCTURE OF THE B' DOMAIN OF THERMOPHILIC FUNGAL TITLE 2 PROTEIN DISULFIDE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B' DOMAIN; COMPND 5 SYNONYM: PDI; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMICOLA INSOLENS; SOURCE 3 ORGANISM_COMMON: FUNGI; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS THIOREDOXIN FOLD EXPDTA NMR, 20 STRUCTURES AUTHOR M.NAKANO,C.MURAKAMI,H.SASAKAWA,T.IGUCHI,O.ASAMI,T.KAJINO, AUTHOR 2 Y.YAMAGUCHI,K.KATO REVDAT 2 25-APR-06 1V52 1 OBSLTE REVDAT 1 28-JUN-05 1V52 0 JRNL AUTH M.NAKANO,C.MURAKAMI,H.SASAKAWA,T.IGUCHI,O.ASAMI, JRNL AUTH 2 T.KAJINO,Y.YAMAGUCHI,K.KATO JRNL TITL SOLUTION STRUCTURE OF THE B' DOMAIN OF JRNL TITL 2 THERMOPHILIC FUNGAL PROTEIN DISULFIDE ISOMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V52 COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-05-01) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-2003. REMARK 100 THE RCSB ID CODE IS RCSB006215. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.16 REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1.0MM PROTEIN DISULFIDE REMARK 210 ISOMERASE B' DOMAIN U-15N,13C; REMARK 210 10MM SODIUM PHOSPHATE BUFFER, REMARK 210 100MM KCL, 10MM REMARK 210 DITHIOTHREITOL; 1.0MM PROTEIN REMARK 210 DISULFIDE ISOMERASE B' DOMAIN; REMARK 210 10MM SODIUM PHOSPHATE BUFFER, REMARK 210 100MM KCL, 10MM DITHIOTHREITOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, SPARKY 3.1, REMARK 210 CYANA 2.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 GLU A 132 -75.60 69.12 REMARK 500 6 GLU A 129 168.33 61.47 REMARK 500 7 ILE A 8 146.10 64.82 REMARK 500 7 LYS A 123 153.16 65.09 REMARK 500 8 ILE A 8 146.20 64.78 REMARK 500 8 GLU A 132 -75.62 69.13 REMARK 500 10 ILE A 8 144.94 64.65 REMARK 500 11 GLU A 132 167.48 61.97 REMARK 500 12 GLU A 129 162.40 63.15 REMARK 500 13 GLU A 100 144.25 66.41 REMARK 500 17 SER A 5 160.56 63.11 REMARK 500 18 LEU A 7 -62.47 73.74 DBREF 1V52 A 7 133 UNP P55059 PDI_HUMIN 229 355 SEQADV 1V52 GLY A 1 UNP P55059 CLONING ARTIFACT SEQADV 1V52 PRO A 2 UNP P55059 CLONING ARTIFACT SEQADV 1V52 LEU A 3 UNP P55059 CLONING ARTIFACT SEQADV 1V52 GLY A 4 UNP P55059 CLONING ARTIFACT SEQADV 1V52 SER A 5 UNP P55059 CLONING ARTIFACT SEQADV 1V52 PRO A 6 UNP P55059 CLONING ARTIFACT SEQRES 1 A 133 GLY PRO LEU GLY SER PRO LEU ILE GLY GLU ILE GLY PRO SEQRES 2 A 133 GLU THR TYR SER ASP TYR MET SER ALA GLY ILE PRO LEU SEQRES 3 A 133 ALA TYR ILE PHE ALA GLU THR ALA GLU GLU ARG LYS GLU SEQRES 4 A 133 LEU SER ASP LYS LEU LYS PRO ILE ALA GLU ALA GLN ARG SEQRES 5 A 133 GLY VAL ILE ASN PHE GLY THR ILE ASP ALA LYS ALA PHE SEQRES 6 A 133 GLY ALA HIS ALA GLY ASN LEU ASN LEU LYS THR ASP LYS SEQRES 7 A 133 PHE PRO ALA PHE ALA ILE GLN GLU VAL ALA LYS ASN GLN SEQRES 8 A 133 LYS PHE PRO PHE ASP GLN GLU LYS GLU ILE THR PHE GLU SEQRES 9 A 133 ALA ILE LYS ALA PHE VAL ASP ASP PHE VAL ALA GLY LYS SEQRES 10 A 133 ILE GLU PRO SER ILE LYS SER GLU PRO ILE PRO GLU LYS SEQRES 11 A 133 GLN GLU GLY HELIX 1 1 THR A 15 MET A 20 1 6 HELIX 2 2 GLU A 36 SER A 41 1 6 HELIX 3 3 LYS A 43 GLN A 51 1 9 HELIX 4 4 THR A 102 GLY A 116 1 15 SHEET 1 A 4 GLY A 9 GLU A 10 0 SHEET 2 A 4 ASN A 56 ASP A 61 1 O THR A 59 N GLY A 9 SHEET 3 A 4 LEU A 26 ALA A 31 1 N ALA A 27 O GLY A 58 SHEET 4 A 4 ALA A 81 GLN A 85 -1 O ALA A 81 N PHE A 30 CISPEP 1 PHE A 79 PRO A 80 1 -0.03 CISPEP 2 PHE A 79 PRO A 80 2 0.02 CISPEP 3 PHE A 79 PRO A 80 3 -0.02 CISPEP 4 PHE A 79 PRO A 80 4 0.06 CISPEP 5 PHE A 79 PRO A 80 5 0.05 CISPEP 6 PHE A 79 PRO A 80 6 -0.03 CISPEP 7 PHE A 79 PRO A 80 7 0.03 CISPEP 8 PHE A 79 PRO A 80 8 -0.03 CISPEP 9 PHE A 79 PRO A 80 9 0.01 CISPEP 10 PHE A 79 PRO A 80 10 -0.01 CISPEP 11 PHE A 79 PRO A 80 11 0.00 CISPEP 12 PHE A 79 PRO A 80 12 0.03 CISPEP 13 PHE A 79 PRO A 80 13 0.03 CISPEP 14 PHE A 79 PRO A 80 14 0.09 CISPEP 15 PHE A 79 PRO A 80 15 -0.03 CISPEP 16 PHE A 79 PRO A 80 16 0.04 CISPEP 17 PHE A 79 PRO A 80 17 0.03 CISPEP 18 PHE A 79 PRO A 80 18 0.06 CISPEP 19 PHE A 79 PRO A 80 19 0.08 CISPEP 20 PHE A 79 PRO A 80 20 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1