data_1V5T # _entry.id 1V5T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1V5T pdb_00001v5t 10.2210/pdb1v5t/pdb RCSB RCSB006242 ? ? WWPDB D_1000006242 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007019603.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1V5T _pdbx_database_status.recvd_initial_deposition_date 2003-11-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, C.' 1 'Kigawa, T.' 2 'Tochio, N.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 8430435I17Rik Protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, C.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Tochio, N.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Yokoyama, S.' 6 ? # _cell.entry_id 1V5T _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V5T _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description '8430435I17Rik Protein' _entity.formula_weight 9571.124 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Ubiquitin-like Domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM GTRESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM GTRESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007019603.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 PRO n 1 10 ILE n 1 11 ILE n 1 12 VAL n 1 13 LYS n 1 14 TRP n 1 15 GLY n 1 16 GLY n 1 17 GLN n 1 18 GLU n 1 19 TYR n 1 20 SER n 1 21 VAL n 1 22 THR n 1 23 THR n 1 24 LEU n 1 25 SER n 1 26 GLU n 1 27 ASP n 1 28 ASP n 1 29 THR n 1 30 VAL n 1 31 LEU n 1 32 ASP n 1 33 LEU n 1 34 LYS n 1 35 GLN n 1 36 PHE n 1 37 LEU n 1 38 LYS n 1 39 THR n 1 40 LEU n 1 41 THR n 1 42 GLY n 1 43 VAL n 1 44 LEU n 1 45 PRO n 1 46 GLU n 1 47 ARG n 1 48 GLN n 1 49 LYS n 1 50 LEU n 1 51 LEU n 1 52 GLY n 1 53 LEU n 1 54 LYS n 1 55 VAL n 1 56 LYS n 1 57 GLY n 1 58 LYS n 1 59 PRO n 1 60 ALA n 1 61 GLU n 1 62 ASN n 1 63 ASP n 1 64 VAL n 1 65 LYS n 1 66 LEU n 1 67 GLY n 1 68 ALA n 1 69 LEU n 1 70 LYS n 1 71 LEU n 1 72 LYS n 1 73 PRO n 1 74 ASN n 1 75 THR n 1 76 LYS n 1 77 ILE n 1 78 MET n 1 79 MET n 1 80 MET n 1 81 GLY n 1 82 THR n 1 83 ARG n 1 84 GLU n 1 85 SER n 1 86 GLY n 1 87 PRO n 1 88 SER n 1 89 SER n 1 90 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'RIKEN cDNA 8430435I17' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030224-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code BAC31711 _struct_ref.pdbx_db_accession 26336026 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1V5T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 84 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 26336026 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 79 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 84 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1V5T GLY A 1 ? GB 26336026 ? ? 'cloning artifact' 1 1 1 1V5T SER A 2 ? GB 26336026 ? ? 'cloning artifact' 2 2 1 1V5T SER A 3 ? GB 26336026 ? ? 'cloning artifact' 3 3 1 1V5T GLY A 4 ? GB 26336026 ? ? 'cloning artifact' 4 4 1 1V5T SER A 5 ? GB 26336026 ? ? 'cloning artifact' 5 5 1 1V5T SER A 6 ? GB 26336026 ? ? 'cloning artifact' 6 6 1 1V5T GLY A 7 ? GB 26336026 ? ? 'cloning artifact' 7 7 1 1V5T SER A 85 ? GB 26336026 ? ? 'cloning artifact' 85 8 1 1V5T GLY A 86 ? GB 26336026 ? ? 'cloning artifact' 86 9 1 1V5T PRO A 87 ? GB 26336026 ? ? 'cloning artifact' 87 10 1 1V5T SER A 88 ? GB 26336026 ? ? 'cloning artifact' 88 11 1 1V5T SER A 89 ? GB 26336026 ? ? 'cloning artifact' 89 12 1 1V5T GLY A 90 ? GB 26336026 ? ? 'cloning artifact' 90 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.17mM Protein U-15N,13C; 20mM Phosphate Na (pH6.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer JEOL _pdbx_nmr_spectrometer.model ECA _pdbx_nmr_spectrometer.field_strength 920 # _pdbx_nmr_refine.entry_id 1V5T _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1V5T _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1V5T _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Delta 4.2 collection JEOL 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B. A.' 3 KUJIRA 0.860 'data analysis' 'Kobayashi, N.' 4 CYANA 1.0.7 'structure solution' 'Guentert, P.' 5 CYANA 1.0.7 refinement 'Guentert, P.' 6 # _exptl.entry_id 1V5T _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1V5T _struct.title 'Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 8430435I17Rik Protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1V5T _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Hypothetical protein, Ubiquitin-like fold, Structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 30 ? THR A 41 ? VAL A 30 THR A 41 1 ? 12 HELX_P HELX_P2 2 LEU A 66 ? LYS A 70 ? LEU A 66 LYS A 70 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 17 ? VAL A 21 ? GLN A 17 VAL A 21 A 2 ILE A 10 ? TRP A 14 ? ILE A 10 TRP A 14 A 3 THR A 75 ? MET A 80 ? THR A 75 MET A 80 A 4 LYS A 49 ? LEU A 51 ? LYS A 49 LEU A 51 B 1 LYS A 54 ? VAL A 55 ? LYS A 54 VAL A 55 B 2 LYS A 58 ? PRO A 59 ? LYS A 58 PRO A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 21 ? O VAL A 21 N ILE A 10 ? N ILE A 10 A 2 3 N LYS A 13 ? N LYS A 13 O MET A 79 ? O MET A 79 A 3 4 O MET A 78 ? O MET A 78 N LEU A 51 ? N LEU A 51 B 1 2 N VAL A 55 ? N VAL A 55 O LYS A 58 ? O LYS A 58 # _database_PDB_matrix.entry_id 1V5T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1V5T _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 GLY 90 90 90 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-25 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 31 ? ? H A GLN 35 ? ? 1.51 2 1 H A THR 29 ? ? OD2 A ASP 32 ? ? 1.56 3 2 O A LEU 37 ? ? HG1 A THR 41 ? ? 1.56 4 3 O A LEU 31 ? ? H A GLN 35 ? ? 1.60 5 4 O A LEU 33 ? ? H A LEU 37 ? ? 1.55 6 4 O A PHE 36 ? ? H A THR 39 ? ? 1.56 7 4 O A LEU 31 ? ? H A GLN 35 ? ? 1.57 8 5 O A LEU 31 ? ? H A GLN 35 ? ? 1.51 9 5 O A ASP 32 ? ? H A PHE 36 ? ? 1.56 10 8 O A LEU 33 ? ? H A LEU 37 ? ? 1.51 11 9 O A LEU 31 ? ? H A GLN 35 ? ? 1.60 12 11 O A LEU 37 ? ? HG1 A THR 41 ? ? 1.52 13 11 O A LEU 31 ? ? H A GLN 35 ? ? 1.56 14 11 O A ASP 32 ? ? H A PHE 36 ? ? 1.60 15 12 O A LEU 33 ? ? H A LEU 37 ? ? 1.55 16 13 H A THR 29 ? ? OD2 A ASP 32 ? ? 1.53 17 13 O A LEU 31 ? ? H A GLN 35 ? ? 1.55 18 14 O A LEU 33 ? ? H A LEU 37 ? ? 1.60 19 18 O A LEU 33 ? ? H A LEU 37 ? ? 1.56 20 19 O A LEU 31 ? ? H A GLN 35 ? ? 1.56 21 20 O A LYS 34 ? ? H A LYS 38 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -161.23 -48.80 2 1 SER A 6 ? ? -165.81 -58.83 3 1 THR A 22 ? ? -142.81 36.86 4 1 LYS A 56 ? ? 39.99 54.90 5 1 ALA A 60 ? ? -42.23 162.77 6 1 GLU A 84 ? ? 72.18 150.96 7 2 SER A 2 ? ? -133.24 -58.35 8 2 SER A 5 ? ? 65.01 157.57 9 2 SER A 6 ? ? 61.41 118.15 10 2 THR A 22 ? ? -152.07 36.09 11 2 ALA A 60 ? ? -42.48 159.21 12 2 ASP A 63 ? ? -85.85 48.57 13 2 GLU A 84 ? ? 71.81 135.58 14 2 SER A 88 ? ? -141.45 -56.88 15 3 SER A 5 ? ? 49.81 79.20 16 3 THR A 22 ? ? -142.81 36.28 17 3 LEU A 44 ? ? -49.47 153.55 18 3 LYS A 56 ? ? 39.70 64.74 19 3 ASP A 63 ? ? -89.69 43.96 20 3 GLU A 84 ? ? 65.19 157.12 21 3 SER A 85 ? ? -161.45 89.87 22 3 SER A 88 ? ? -141.70 -55.82 23 3 SER A 89 ? ? 49.51 92.26 24 4 SER A 2 ? ? -163.62 -58.63 25 4 SER A 5 ? ? -167.89 -58.84 26 4 THR A 22 ? ? -143.19 35.27 27 4 THR A 41 ? ? -91.93 -66.07 28 4 LEU A 44 ? ? -44.47 152.41 29 4 ALA A 60 ? ? -44.53 159.21 30 4 ASP A 63 ? ? -179.06 37.67 31 4 GLU A 84 ? ? 50.45 96.37 32 4 SER A 89 ? ? 64.06 -80.47 33 5 THR A 22 ? ? -144.35 34.39 34 5 LEU A 44 ? ? -43.28 151.75 35 5 GLU A 84 ? ? 60.48 160.66 36 6 SER A 2 ? ? -131.05 -58.74 37 6 SER A 5 ? ? 61.72 92.28 38 6 THR A 22 ? ? -144.50 37.71 39 6 ASP A 28 ? ? -45.21 158.12 40 6 LYS A 56 ? ? 39.01 50.20 41 6 ASP A 63 ? ? -87.18 48.15 42 6 GLU A 84 ? ? -38.07 108.80 43 7 SER A 3 ? ? -172.95 141.43 44 7 SER A 6 ? ? 74.66 -57.82 45 7 ASP A 28 ? ? -48.25 172.38 46 7 ALA A 60 ? ? -40.62 150.25 47 7 GLU A 61 ? ? -53.70 -175.42 48 7 ASP A 63 ? ? -90.11 49.28 49 7 GLU A 84 ? ? 74.81 157.92 50 8 THR A 22 ? ? -147.18 38.21 51 8 LEU A 44 ? ? -48.12 154.95 52 8 ASP A 63 ? ? -87.78 47.22 53 8 GLU A 84 ? ? 72.31 176.31 54 9 SER A 6 ? ? 61.14 170.44 55 9 THR A 22 ? ? -142.56 36.51 56 9 ALA A 60 ? ? -50.91 176.81 57 9 GLU A 84 ? ? 50.89 80.50 58 9 SER A 89 ? ? 59.28 158.89 59 10 THR A 22 ? ? -148.02 35.22 60 10 ASP A 28 ? ? -46.33 167.78 61 10 THR A 41 ? ? -107.51 -66.13 62 10 LEU A 44 ? ? -43.46 151.94 63 10 ALA A 60 ? ? -49.21 165.01 64 10 ASP A 63 ? ? -92.66 42.14 65 10 ARG A 83 ? ? -39.11 155.47 66 10 GLU A 84 ? ? 58.82 -168.21 67 11 THR A 22 ? ? -150.02 33.95 68 11 LYS A 56 ? ? 39.65 49.67 69 11 GLU A 84 ? ? 61.46 72.55 70 11 SER A 88 ? ? 59.56 162.35 71 11 SER A 89 ? ? -157.70 -58.37 72 12 SER A 2 ? ? 179.39 148.35 73 12 SER A 3 ? ? 59.74 161.37 74 12 THR A 22 ? ? -141.53 34.44 75 12 SER A 25 ? ? -127.67 -167.68 76 12 ASP A 28 ? ? -47.11 153.37 77 12 THR A 41 ? ? -94.55 -62.71 78 12 LEU A 44 ? ? -42.69 154.44 79 12 ALA A 60 ? ? -40.42 157.52 80 12 GLU A 61 ? ? -62.73 -175.99 81 12 ASP A 63 ? ? -93.34 41.57 82 12 ASN A 74 ? ? 156.60 45.65 83 12 GLU A 84 ? ? 73.48 151.10 84 12 SER A 85 ? ? -171.19 -56.04 85 12 SER A 89 ? ? 61.14 164.18 86 13 SER A 6 ? ? -120.77 -56.23 87 13 THR A 22 ? ? -141.96 33.58 88 13 ASP A 28 ? ? -48.50 162.24 89 13 LEU A 44 ? ? -44.38 151.61 90 13 GLU A 61 ? ? -59.69 -177.03 91 13 ASP A 63 ? ? -90.18 42.13 92 13 GLU A 84 ? ? 79.24 167.61 93 14 SER A 2 ? ? 63.19 97.53 94 14 SER A 5 ? ? 57.74 97.95 95 14 THR A 22 ? ? -141.87 39.19 96 14 LEU A 44 ? ? -49.33 152.91 97 14 ALA A 60 ? ? -45.46 164.18 98 14 GLU A 84 ? ? 75.18 71.50 99 14 SER A 85 ? ? 39.43 89.78 100 14 SER A 88 ? ? 62.82 82.56 101 14 SER A 89 ? ? -179.51 -59.96 102 15 SER A 5 ? ? 61.53 84.30 103 15 SER A 6 ? ? 175.68 90.54 104 15 THR A 22 ? ? -147.83 37.43 105 15 ASP A 28 ? ? -49.18 150.06 106 15 LEU A 44 ? ? -47.71 153.03 107 15 LYS A 56 ? ? 39.71 48.87 108 15 ALA A 60 ? ? -47.97 158.88 109 15 GLU A 61 ? ? -69.13 -178.21 110 15 ASP A 63 ? ? -87.60 46.79 111 15 GLU A 84 ? ? 76.77 161.70 112 15 SER A 89 ? ? 63.20 138.23 113 16 THR A 22 ? ? -141.01 41.35 114 16 LEU A 44 ? ? -45.91 153.91 115 16 GLN A 48 ? ? -58.96 103.60 116 16 LYS A 56 ? ? 68.33 -65.96 117 16 ALA A 60 ? ? -42.49 157.11 118 16 GLU A 84 ? ? 72.44 159.01 119 16 SER A 85 ? ? -105.68 -63.69 120 16 SER A 89 ? ? -139.13 -57.71 121 17 SER A 2 ? ? 57.20 92.96 122 17 THR A 22 ? ? -149.32 36.48 123 17 LYS A 56 ? ? 32.68 59.55 124 17 GLU A 61 ? ? -53.01 172.22 125 17 GLU A 84 ? ? 72.34 99.38 126 18 SER A 2 ? ? 49.19 87.53 127 18 THR A 22 ? ? -145.65 36.65 128 18 ASP A 28 ? ? -43.54 162.09 129 18 THR A 41 ? ? -91.73 -62.86 130 18 LEU A 44 ? ? -40.91 152.83 131 18 GLN A 48 ? ? -51.43 101.01 132 18 LYS A 56 ? ? 35.77 54.08 133 18 GLU A 61 ? ? -58.39 -175.17 134 18 ASP A 63 ? ? -91.79 44.11 135 18 GLU A 84 ? ? 67.34 162.66 136 18 SER A 89 ? ? -145.08 -58.50 137 19 SER A 2 ? ? 62.31 86.44 138 19 SER A 3 ? ? -40.41 154.65 139 19 THR A 22 ? ? -143.06 34.95 140 19 ASP A 28 ? ? -45.27 165.67 141 19 THR A 41 ? ? -104.67 -67.82 142 19 ALA A 60 ? ? -42.05 157.41 143 19 ASP A 63 ? ? -87.51 46.63 144 19 GLU A 84 ? ? 75.99 118.63 145 20 SER A 5 ? ? -45.52 159.53 146 20 THR A 22 ? ? -151.85 36.74 147 20 LEU A 44 ? ? -40.25 151.53 148 20 ALA A 60 ? ? -48.03 162.27 149 20 THR A 75 ? ? -59.70 100.62 150 20 GLU A 84 ? ? 69.76 -66.24 151 20 SER A 85 ? ? 75.60 152.51 152 20 SER A 89 ? ? 179.99 -55.94 #