HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-NOV-03 1V5T TITLE SOLUTION STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN FROM MOUSE TITLE 2 HYPOTHETICAL 8430435I17RIK PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 8430435I17RIK PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 8430435I17; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030224-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS HYPOTHETICAL PROTEIN, UBIQUITIN-LIKE FOLD, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ZHAO,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V5T 1 REMARK REVDAT 3 02-MAR-22 1V5T 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V5T 1 VERSN REVDAT 1 25-MAY-04 1V5T 0 JRNL AUTH C.ZHAO,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN FROM MOUSE JRNL TITL 2 HYPOTHETICAL 8430435I17RIK PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA 4.2, CYANA 1.0.7 REMARK 3 AUTHORS : JEOL (DELTA), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V5T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006242. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM PROTEIN U-15N,13C; 20MM REMARK 210 PHOSPHATE NA (PH6.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 920 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.860, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 31 H GLN A 35 1.51 REMARK 500 H THR A 29 OD2 ASP A 32 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -48.80 -161.23 REMARK 500 1 SER A 6 -58.83 -165.81 REMARK 500 1 THR A 22 36.86 -142.81 REMARK 500 1 LYS A 56 54.90 39.99 REMARK 500 1 ALA A 60 162.77 -42.23 REMARK 500 1 GLU A 84 150.96 72.18 REMARK 500 2 SER A 2 -58.35 -133.24 REMARK 500 2 SER A 5 157.57 65.01 REMARK 500 2 SER A 6 118.15 61.41 REMARK 500 2 THR A 22 36.09 -152.07 REMARK 500 2 ALA A 60 159.21 -42.48 REMARK 500 2 ASP A 63 48.57 -85.85 REMARK 500 2 GLU A 84 135.58 71.81 REMARK 500 2 SER A 88 -56.88 -141.45 REMARK 500 3 SER A 5 79.20 49.81 REMARK 500 3 THR A 22 36.28 -142.81 REMARK 500 3 LEU A 44 153.55 -49.47 REMARK 500 3 LYS A 56 64.74 39.70 REMARK 500 3 ASP A 63 43.96 -89.69 REMARK 500 3 GLU A 84 157.12 65.19 REMARK 500 3 SER A 85 89.87 -161.45 REMARK 500 3 SER A 88 -55.82 -141.70 REMARK 500 3 SER A 89 92.26 49.51 REMARK 500 4 SER A 2 -58.63 -163.62 REMARK 500 4 SER A 5 -58.84 -167.89 REMARK 500 4 THR A 22 35.27 -143.19 REMARK 500 4 THR A 41 -66.07 -91.93 REMARK 500 4 LEU A 44 152.41 -44.47 REMARK 500 4 ALA A 60 159.21 -44.53 REMARK 500 4 ASP A 63 37.67 -179.06 REMARK 500 4 GLU A 84 96.37 50.45 REMARK 500 4 SER A 89 -80.47 64.06 REMARK 500 5 THR A 22 34.39 -144.35 REMARK 500 5 LEU A 44 151.75 -43.28 REMARK 500 5 GLU A 84 160.66 60.48 REMARK 500 6 SER A 2 -58.74 -131.05 REMARK 500 6 SER A 5 92.28 61.72 REMARK 500 6 THR A 22 37.71 -144.50 REMARK 500 6 ASP A 28 158.12 -45.21 REMARK 500 6 LYS A 56 50.20 39.01 REMARK 500 6 ASP A 63 48.15 -87.18 REMARK 500 6 GLU A 84 108.80 -38.07 REMARK 500 7 SER A 3 141.43 -172.95 REMARK 500 7 SER A 6 -57.82 74.66 REMARK 500 7 ASP A 28 172.38 -48.25 REMARK 500 7 ALA A 60 150.25 -40.62 REMARK 500 7 GLU A 61 -175.42 -53.70 REMARK 500 7 ASP A 63 49.28 -90.11 REMARK 500 7 GLU A 84 157.92 74.81 REMARK 500 8 THR A 22 38.21 -147.18 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007019603.1 RELATED DB: TARGETDB DBREF 1V5T A 8 84 GB 26336026 BAC31711 3 79 SEQADV 1V5T GLY A 1 GB 26336026 CLONING ARTIFACT SEQADV 1V5T SER A 2 GB 26336026 CLONING ARTIFACT SEQADV 1V5T SER A 3 GB 26336026 CLONING ARTIFACT SEQADV 1V5T GLY A 4 GB 26336026 CLONING ARTIFACT SEQADV 1V5T SER A 5 GB 26336026 CLONING ARTIFACT SEQADV 1V5T SER A 6 GB 26336026 CLONING ARTIFACT SEQADV 1V5T GLY A 7 GB 26336026 CLONING ARTIFACT SEQADV 1V5T SER A 85 GB 26336026 CLONING ARTIFACT SEQADV 1V5T GLY A 86 GB 26336026 CLONING ARTIFACT SEQADV 1V5T PRO A 87 GB 26336026 CLONING ARTIFACT SEQADV 1V5T SER A 88 GB 26336026 CLONING ARTIFACT SEQADV 1V5T SER A 89 GB 26336026 CLONING ARTIFACT SEQADV 1V5T GLY A 90 GB 26336026 CLONING ARTIFACT SEQRES 1 A 90 GLY SER SER GLY SER SER GLY LEU PRO ILE ILE VAL LYS SEQRES 2 A 90 TRP GLY GLY GLN GLU TYR SER VAL THR THR LEU SER GLU SEQRES 3 A 90 ASP ASP THR VAL LEU ASP LEU LYS GLN PHE LEU LYS THR SEQRES 4 A 90 LEU THR GLY VAL LEU PRO GLU ARG GLN LYS LEU LEU GLY SEQRES 5 A 90 LEU LYS VAL LYS GLY LYS PRO ALA GLU ASN ASP VAL LYS SEQRES 6 A 90 LEU GLY ALA LEU LYS LEU LYS PRO ASN THR LYS ILE MET SEQRES 7 A 90 MET MET GLY THR ARG GLU SER GLY PRO SER SER GLY HELIX 1 1 VAL A 30 THR A 41 1 12 HELIX 2 2 LEU A 66 LYS A 70 1 5 SHEET 1 A 4 GLN A 17 VAL A 21 0 SHEET 2 A 4 ILE A 10 TRP A 14 -1 N ILE A 10 O VAL A 21 SHEET 3 A 4 THR A 75 MET A 80 1 O MET A 79 N LYS A 13 SHEET 4 A 4 LYS A 49 LEU A 51 -1 N LEU A 51 O MET A 78 SHEET 1 B 2 LYS A 54 VAL A 55 0 SHEET 2 B 2 LYS A 58 PRO A 59 -1 O LYS A 58 N VAL A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1