HEADER SIGNALING PROTEIN 26-NOV-03 1V61 TITLE SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF ALPHA-PIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC/CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR (GEF) 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN; COMPND 5 SYNONYM: PAK-INTERACTING EXCHANGE FACTOR ALPHA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1700038J06; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030212-43; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PLECKSTRIN HOMOLOGY DOMAIN, GUANINE NUCLEOTIDE EXCHANGE FACTOR, KEYWDS 2 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAKANISHI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V61 1 REMARK REVDAT 3 02-MAR-22 1V61 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V61 1 VERSN REVDAT 1 26-MAY-04 1V61 0 JRNL AUTH T.NAKANISHI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF JRNL TITL 2 ALPHA-PIX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V61 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006250. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.15MM PH DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.870, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 120 H LEU A 124 1.45 REMARK 500 H LEU A 50 O ILE A 57 1.55 REMARK 500 O GLN A 15 H TYR A 70 1.56 REMARK 500 H LEU A 56 O ILE A 74 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -58.50 -166.37 REMARK 500 1 SER A 6 153.58 -46.36 REMARK 500 1 GLN A 8 -61.77 69.88 REMARK 500 1 SER A 11 -48.38 -162.75 REMARK 500 1 ALA A 16 -37.70 86.73 REMARK 500 1 GLU A 18 112.98 -168.54 REMARK 500 1 ASP A 20 -72.50 -142.41 REMARK 500 1 ILE A 29 -78.38 -48.46 REMARK 500 1 GLN A 37 -72.74 -129.11 REMARK 500 1 HIS A 38 -170.94 -177.25 REMARK 500 1 ALA A 40 111.47 60.20 REMARK 500 1 CYS A 41 -74.13 -147.10 REMARK 500 1 GLU A 42 -71.44 -123.85 REMARK 500 1 SER A 53 -13.66 84.23 REMARK 500 1 PRO A 63 -162.64 -75.02 REMARK 500 1 ARG A 64 -85.53 -78.52 REMARK 500 1 SER A 66 90.61 179.71 REMARK 500 1 GLN A 71 -70.59 -94.68 REMARK 500 1 ASN A 82 41.81 -149.40 REMARK 500 1 ARG A 83 37.62 38.11 REMARK 500 1 ILE A 87 -148.18 -108.49 REMARK 500 1 SER A 90 81.37 -166.38 REMARK 500 1 ASP A 91 142.82 65.56 REMARK 500 1 CYS A 92 -85.12 -82.58 REMARK 500 1 MET A 93 -167.05 42.57 REMARK 500 1 VAL A 101 63.07 -163.79 REMARK 500 1 CYS A 108 -168.94 -67.16 REMARK 500 1 ASN A 109 -44.86 -160.06 REMARK 500 1 ASN A 110 79.48 72.14 REMARK 500 1 ASN A 111 166.83 179.68 REMARK 500 1 LEU A 124 -76.57 -55.93 REMARK 500 1 SER A 131 82.08 51.62 REMARK 500 2 LEU A 10 159.77 -42.49 REMARK 500 2 SER A 11 -75.04 -43.25 REMARK 500 2 GLU A 12 152.76 -38.98 REMARK 500 2 PRO A 13 -164.38 -74.93 REMARK 500 2 ALA A 16 22.91 81.50 REMARK 500 2 ASP A 20 -53.40 -164.44 REMARK 500 2 ILE A 29 -78.79 -44.77 REMARK 500 2 GLN A 37 -97.69 -121.65 REMARK 500 2 HIS A 38 -51.35 -158.55 REMARK 500 2 ALA A 40 101.32 -164.83 REMARK 500 2 CYS A 41 -71.36 -119.51 REMARK 500 2 GLU A 42 -53.44 -128.40 REMARK 500 2 SER A 53 35.12 79.36 REMARK 500 2 SER A 54 -32.58 -179.39 REMARK 500 2 MET A 65 -29.22 165.32 REMARK 500 2 GLN A 71 -64.31 -101.01 REMARK 500 2 ALA A 77 -72.65 -57.09 REMARK 500 2 ILE A 87 -145.97 -103.24 REMARK 500 REMARK 500 THIS ENTRY HAS 586 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007009978.1 RELATED DB: TARGETDB DBREF 1V61 A 8 126 GB 22266730 AAM94903 429 547 SEQADV 1V61 GLY A 1 GB 22266730 CLONING ARTIFACT SEQADV 1V61 SER A 2 GB 22266730 CLONING ARTIFACT SEQADV 1V61 SER A 3 GB 22266730 CLONING ARTIFACT SEQADV 1V61 GLY A 4 GB 22266730 CLONING ARTIFACT SEQADV 1V61 SER A 5 GB 22266730 CLONING ARTIFACT SEQADV 1V61 SER A 6 GB 22266730 CLONING ARTIFACT SEQADV 1V61 GLY A 7 GB 22266730 CLONING ARTIFACT SEQADV 1V61 SER A 127 GB 22266730 CLONING ARTIFACT SEQADV 1V61 GLY A 128 GB 22266730 CLONING ARTIFACT SEQADV 1V61 PRO A 129 GB 22266730 CLONING ARTIFACT SEQADV 1V61 SER A 130 GB 22266730 CLONING ARTIFACT SEQADV 1V61 SER A 131 GB 22266730 CLONING ARTIFACT SEQADV 1V61 GLY A 132 GB 22266730 CLONING ARTIFACT SEQRES 1 A 132 GLY SER SER GLY SER SER GLY GLN ILE LEU SER GLU PRO SEQRES 2 A 132 ILE GLN ALA TRP GLU GLY ASP ASP ILE LYS THR LEU GLY SEQRES 3 A 132 ASN VAL ILE PHE MET SER GLN VAL VAL MET GLN HIS GLY SEQRES 4 A 132 ALA CYS GLU GLU LYS GLU GLU ARG TYR PHE LEU LEU PHE SEQRES 5 A 132 SER SER VAL LEU ILE MET LEU SER ALA SER PRO ARG MET SEQRES 6 A 132 SER GLY PHE MET TYR GLN GLY LYS ILE PRO ILE ALA GLY SEQRES 7 A 132 MET VAL VAL ASN ARG LEU ASP GLU ILE GLU GLY SER ASP SEQRES 8 A 132 CYS MET PHE GLU ILE THR GLY SER THR VAL GLU ARG ILE SEQRES 9 A 132 VAL VAL HIS CYS ASN ASN ASN GLN ASP PHE GLN GLU TRP SEQRES 10 A 132 MET GLU GLN LEU ASN ARG LEU THR LYS SER GLY PRO SER SEQRES 11 A 132 SER GLY HELIX 1 1 ILE A 22 THR A 24 5 3 HELIX 2 2 GLN A 112 LEU A 124 1 13 SHEET 1 A 5 MET A 31 VAL A 35 0 SHEET 2 A 5 GLU A 46 LEU A 51 -1 O PHE A 49 N SER A 32 SHEET 3 A 5 VAL A 55 SER A 60 -1 O LEU A 59 N TYR A 48 SHEET 4 A 5 PHE A 68 PRO A 75 -1 O ILE A 74 N LEU A 56 SHEET 5 A 5 ILE A 14 GLN A 15 1 N GLN A 15 O PHE A 68 SHEET 1 B 3 VAL A 80 ASN A 82 0 SHEET 2 B 3 PHE A 94 THR A 97 -1 O THR A 97 N VAL A 80 SHEET 3 B 3 ILE A 104 HIS A 107 -1 O VAL A 106 N PHE A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1