HEADER TRANSCRIPTION 27-NOV-03 1V64 TITLE SOLUTION STRUCTURE OF THE 3RD HMG BOX OF MOUSE UBF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLAR TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG BOX DOMAIN; COMPND 5 SYNONYM: UPSTREAM BINDING FACTOR 1, UBF-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1300010N03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030107-50; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V64 1 REMARK REVDAT 3 02-MAR-22 1V64 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V64 1 VERSN REVDAT 1 27-MAY-04 1V64 0 JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 3RD HMG BOX OF MOUSE UBF1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V64 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006253. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HMG BOX DOMAIN, 20MM D-TRIS REMARK 210 -HCL, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20020425, REMARK 210 NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 32.39 -99.29 REMARK 500 1 PHE A 13 45.09 -94.61 REMARK 500 1 ASP A 14 -48.59 -147.62 REMARK 500 1 PRO A 17 -174.35 -66.73 REMARK 500 1 ASP A 38 43.02 -94.95 REMARK 500 1 ASN A 101 41.75 -96.30 REMARK 500 1 ILE A 102 72.75 63.27 REMARK 500 2 SER A 3 90.14 -173.04 REMARK 500 2 PHE A 13 30.34 -97.12 REMARK 500 2 ASP A 14 -57.67 -130.84 REMARK 500 2 PRO A 17 -175.96 -68.57 REMARK 500 2 THR A 18 107.95 -58.92 REMARK 500 2 ASP A 38 45.40 -94.41 REMARK 500 2 ILE A 102 104.78 64.52 REMARK 500 2 PRO A 105 -169.54 -69.82 REMARK 500 3 SER A 3 -46.28 -165.30 REMARK 500 3 GLN A 8 -46.17 -133.46 REMARK 500 3 PRO A 17 -167.67 -69.10 REMARK 500 3 ASP A 38 43.39 -94.55 REMARK 500 3 ASN A 101 30.01 -99.20 REMARK 500 3 ILE A 102 41.54 -106.97 REMARK 500 3 PRO A 105 -167.98 -69.90 REMARK 500 4 SER A 3 -47.23 -139.54 REMARK 500 4 SER A 6 -44.37 -168.73 REMARK 500 4 LYS A 12 35.36 -98.87 REMARK 500 4 PHE A 13 39.51 -177.03 REMARK 500 4 ASP A 14 -59.37 -127.58 REMARK 500 4 PRO A 17 -178.41 -64.82 REMARK 500 4 THR A 18 103.76 -58.12 REMARK 500 4 ASP A 38 44.17 -94.95 REMARK 500 4 SER A 103 94.67 -179.45 REMARK 500 4 SER A 106 81.87 60.46 REMARK 500 4 SER A 107 103.50 60.85 REMARK 500 5 SER A 3 104.57 -164.71 REMARK 500 5 SER A 6 -46.85 -150.90 REMARK 500 5 PHE A 13 31.58 -162.97 REMARK 500 5 PRO A 17 -167.64 -68.13 REMARK 500 5 THR A 18 105.09 -59.79 REMARK 500 5 ASP A 38 35.90 -96.37 REMARK 500 5 LEU A 100 54.08 -106.65 REMARK 500 5 ASN A 101 33.59 -98.18 REMARK 500 5 SER A 103 34.25 -98.26 REMARK 500 5 SER A 107 102.45 60.33 REMARK 500 6 SER A 5 -46.32 -164.47 REMARK 500 6 SER A 6 -47.33 -146.15 REMARK 500 6 LYS A 12 30.49 -98.05 REMARK 500 6 PHE A 13 30.42 -155.89 REMARK 500 6 ASP A 14 -53.38 -157.90 REMARK 500 6 PRO A 17 -169.23 -68.96 REMARK 500 6 ASP A 38 42.38 -94.85 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011339.1 RELATED DB: TARGETDB DBREF 1V64 A 8 102 UNP P25976 UBF1_MOUSE 288 382 SEQADV 1V64 GLY A 1 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 2 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 3 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 4 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 5 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 6 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 7 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 103 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 104 UNP P25976 CLONING ARTIFACT SEQADV 1V64 PRO A 105 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 106 UNP P25976 CLONING ARTIFACT SEQADV 1V64 SER A 107 UNP P25976 CLONING ARTIFACT SEQADV 1V64 GLY A 108 UNP P25976 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY GLN LEU LYS ASP LYS PHE SEQRES 2 A 108 ASP GLY ARG PRO THR LYS PRO PRO PRO ASN SER TYR SER SEQRES 3 A 108 LEU TYR CYS ALA GLU LEU MET ALA ASN MET LYS ASP VAL SEQRES 4 A 108 PRO SER THR GLU ARG MET VAL LEU CYS SER GLN GLN TRP SEQRES 5 A 108 LYS LEU LEU SER GLN LYS GLU LYS ASP ALA TYR HIS LYS SEQRES 6 A 108 LYS CYS ASP GLN LYS LYS LYS ASP TYR GLU VAL GLU LEU SEQRES 7 A 108 LEU ARG PHE LEU GLU SER LEU PRO GLU GLU GLU GLN GLN SEQRES 8 A 108 ARG VAL LEU GLY GLU GLU LYS MET LEU ASN ILE SER GLY SEQRES 9 A 108 PRO SER SER GLY HELIX 1 1 SER A 24 MET A 36 1 13 HELIX 2 2 SER A 41 LEU A 55 1 15 HELIX 3 3 GLN A 57 LEU A 85 1 29 HELIX 4 4 GLU A 87 GLY A 95 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1