HEADER TOXIN 03-DEC-03 1V6P TITLE CRYSTAL STRUCTURE OF COBROTOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBROTOXIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATRATOXIN, CBT, SHORT NEUROTOXIN 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAJA ATRA; SOURCE 3 ORGANISM_COMMON: CHINESE COBRA; SOURCE 4 ORGANISM_TAXID: 8656 KEYWDS ATOMIC RESOLUTION, SHORT-CHAIN NEUROTOXIN, NAJA ATRA, COPPER ION, KEYWDS 2 TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR X.LOU,X.TU,J.WANG,M.TENG,L.NIU,Q.LIU,Q.HUANG,Q.HAO REVDAT 3 27-DEC-23 1V6P 1 REMARK LINK REVDAT 2 24-FEB-09 1V6P 1 VERSN REVDAT 1 21-DEC-04 1V6P 0 JRNL AUTH X.LOU,Q.LIU,X.TU,J.WANG,M.TENG,L.NIU,D.J.SCHULLER,Q.HUANG, JRNL AUTH 2 Q.HAO JRNL TITL THE ATOMIC RESOLUTION CRYSTAL STRUCTURE OF ATRATOXIN JRNL TITL 2 DETERMINED BY SINGLE WAVELENGTH ANOMALOUS DIFFRACTION JRNL TITL 3 PHASING JRNL REF J.BIOL.CHEM. V. 279 39094 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15252034 JRNL DOI 10.1074/JBC.M403863200 REMARK 2 REMARK 2 RESOLUTION. 0.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.120 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 3764 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 75913 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.116 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3507 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 71390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1141.7 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 481.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 74 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 13468 REMARK 3 NUMBER OF RESTRAINTS : 16450 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 0.038 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.035 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.095 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.107 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.000 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.036 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED ALSO WITH CNS REMARK 3 1.0 REMARK 4 REMARK 4 1V6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000006274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76069 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.870 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 38.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HAC-NAAC, ETHANOL, NACL, CUCL2, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.00900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.00900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.40400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.64350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.40400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.64350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.00900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.40400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 23.64350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.00900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.40400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 23.64350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 EOH A1202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1208 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1209 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 386 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 406 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG A 33 OG SER A 45 8456 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 CD - NE - CZ ANGL. DEV. = 21.5 DEGREES REMARK 500 ARG A 28 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ASP A 31 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 36 CD - NE - CZ ANGL. DEV. = 18.6 DEGREES REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASN A 48 CA - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 ASN A 48 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLY B 20 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 GLY B 20 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG B 28 CD - NE - CZ ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 28 NH1 - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 30 CD - NE - CZ ANGL. DEV. = 27.8 DEGREES REMARK 500 ARG B 30 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 30 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 33 CA - C - N ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR B 35 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG B 36 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG B 39 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 59 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 -146.36 56.55 REMARK 500 SER A 8 -119.11 39.06 REMARK 500 HIS A 32 -178.80 33.83 REMARK 500 HIS A 32 -122.73 58.60 REMARK 500 ARG A 33 31.45 -52.03 REMARK 500 ARG A 33 31.45 -94.22 REMARK 500 CYS A 43 87.05 -154.17 REMARK 500 CYS A 43 81.15 -154.17 REMARK 500 SER B 8 -133.18 50.09 REMARK 500 HIS B 32 -107.71 48.20 REMARK 500 CYS B 43 67.09 -152.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 303 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE1 1.9 REMARK 620 3 ASP A 58 OD2 83.3 84.8 REMARK 620 4 ASP A 58 OD1 78.3 78.2 53.1 REMARK 620 5 HOH A1205 O 89.7 88.0 161.7 108.9 REMARK 620 6 HOH A1206 O 85.8 86.9 94.1 144.7 102.3 REMARK 620 7 HIS B 32 NE2 176.4 177.9 93.2 100.1 93.8 93.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 307 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE2 REMARK 620 2 HOH A1205 O 80.1 REMARK 620 3 HOH A1208 O 175.9 101.4 REMARK 620 4 HOH A1208 O 175.9 101.4 0.0 REMARK 620 5 HOH A1218 O 89.0 163.2 90.4 90.4 REMARK 620 6 HOH A1218 O 95.1 96.5 81.0 81.0 97.2 REMARK 620 7 HOH A1281 O 74.9 37.4 103.9 103.9 150.4 60.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 4 NE2 REMARK 620 2 ASN A 62 OD1 92.2 REMARK 620 3 HOH A1219 O 100.0 93.0 REMARK 620 4 GLU B 38 OE1 92.8 170.9 93.6 REMARK 620 5 HOH B 360 O 159.0 83.7 100.8 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 4 NE2 REMARK 620 2 ASN A 62 OD1 89.5 REMARK 620 3 GLU B 38 OE1 110.4 148.7 REMARK 620 4 GLU B 38 OE2 83.9 119.2 44.1 REMARK 620 5 HOH B 360 O 146.5 57.1 101.2 113.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 4 NE2 REMARK 620 2 HOH B 360 O 118.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 4 NE2 REMARK 620 2 ARG A 59 O 104.2 REMARK 620 3 HOH B 360 O 95.0 147.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 312 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 19 O REMARK 620 2 HOH A1203 O 83.2 REMARK 620 3 HOH A1237 O 92.3 87.6 REMARK 620 4 HOH B 392 O 92.3 82.0 168.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 306 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD2 REMARK 620 2 HIS A 32 NE2 83.5 REMARK 620 3 ASP B 58 OD2 70.6 130.7 REMARK 620 4 HOH B 375 O 122.2 136.3 92.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 306 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 HIS A 32 NE2 128.2 REMARK 620 3 ASP B 58 OD2 85.9 120.7 REMARK 620 4 HOH B 375 O 119.2 53.7 67.6 REMARK 620 5 HOH B 376 O 158.7 31.4 101.7 49.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 OE1 REMARK 620 2 HIS B 4 NE2 141.0 REMARK 620 3 ASN B 62 OD1 77.9 73.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 OE1 REMARK 620 2 HIS B 4 NE2 176.7 REMARK 620 3 ARG B 59 O 85.0 93.0 REMARK 620 4 ASN B 62 OD1 95.9 86.7 88.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 304 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 51 OE2 REMARK 620 2 HOH A1270 O 34.4 REMARK 620 3 HOH A1271 O 88.2 59.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 62 OD1 REMARK 620 2 HOH A1214 O 92.8 REMARK 620 3 HOH B 360 O 52.7 133.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 311 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1264 O REMARK 620 2 HOH A1265 O 155.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 1202 DBREF 1V6P A 1 62 UNP P60770 NXS1_NAJAT 22 83 DBREF 1V6P B 1 62 UNP P60770 NXS1_NAJAT 22 83 SEQRES 1 A 62 LEU GLU CYS HIS ASN GLN GLN SER SER GLN THR PRO THR SEQRES 2 A 62 THR THR GLY CYS SER GLY GLY GLU THR ASN CYS TYR LYS SEQRES 3 A 62 LYS ARG TRP ARG ASP HIS ARG GLY TYR ARG THR GLU ARG SEQRES 4 A 62 GLY CYS GLY CYS PRO SER VAL LYS ASN GLY ILE GLU ILE SEQRES 5 A 62 ASN CYS CYS THR THR ASP ARG CYS ASN ASN SEQRES 1 B 62 LEU GLU CYS HIS ASN GLN GLN SER SER GLN THR PRO THR SEQRES 2 B 62 THR THR GLY CYS SER GLY GLY GLU THR ASN CYS TYR LYS SEQRES 3 B 62 LYS ARG TRP ARG ASP HIS ARG GLY TYR ARG THR GLU ARG SEQRES 4 B 62 GLY CYS GLY CYS PRO SER VAL LYS ASN GLY ILE GLU ILE SEQRES 5 B 62 ASN CYS CYS THR THR ASP ARG CYS ASN ASN HET CU A 302 4 HET CU A 303 1 HET CU A 304 1 HET CU A 305 1 HET CU A 306 2 HET CU A 307 1 HET CU A 308 2 HET CU A 310 1 HET CU A 311 1 HET CU A 312 1 HET CL A 401 1 HET NA A 501 2 HET NA A 502 2 HET EOH A1201 3 HET EOH A1202 3 HET CU B 301 2 HET CU B 309 1 HETNAM CU COPPER (II) ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EOH ETHANOL FORMUL 3 CU 12(CU 2+) FORMUL 13 CL CL 1- FORMUL 14 NA 2(NA 1+) FORMUL 16 EOH 2(C2 H6 O) FORMUL 20 HOH *248(H2 O) SHEET 1 A 2 GLU A 2 HIS A 4 0 SHEET 2 A 2 THR A 14 GLY A 16 -1 O THR A 15 N CYS A 3 SHEET 1 B 3 GLY A 34 CYS A 41 0 SHEET 2 B 3 CYS A 24 ASP A 31 -1 N LYS A 27 O GLU A 38 SHEET 3 B 3 GLU A 51 CYS A 55 -1 O GLU A 51 N ARG A 28 SHEET 1 C 2 GLU B 2 HIS B 4 0 SHEET 2 C 2 THR B 14 GLY B 16 -1 O THR B 15 N CYS B 3 SHEET 1 D 3 GLY B 34 CYS B 41 0 SHEET 2 D 3 CYS B 24 ASP B 31 -1 N LYS B 27 O GLU B 38 SHEET 3 D 3 GLU B 51 CYS B 55 -1 O ASN B 53 N LYS B 26 SSBOND 1 CYS A 3 CYS A 24 1555 1555 2.04 SSBOND 2 CYS A 17 CYS A 41 1555 1555 2.05 SSBOND 3 CYS A 43 CYS A 54 1555 1555 2.03 SSBOND 4 CYS A 55 CYS A 60 1555 1555 2.03 SSBOND 5 CYS B 3 CYS B 24 1555 1555 2.04 SSBOND 6 CYS B 17 CYS B 41 1555 1555 2.04 SSBOND 7 CYS B 43 CYS B 54 1555 1555 2.03 SSBOND 8 CYS B 55 CYS B 60 1555 1555 2.03 LINK OE1AGLU A 2 CU CU A 303 1555 1555 1.86 LINK OE1BGLU A 2 CU CU A 303 1555 1555 2.03 LINK OE2AGLU A 2 CU CU A 307 1555 1555 1.86 LINK NE2 HIS A 4 CU A CU A 302 1555 1555 1.96 LINK NE2 HIS A 4 CU B CU A 302 1555 1555 2.02 LINK NE2 HIS A 4 CU C CU A 302 1555 1555 2.21 LINK NE2 HIS A 4 CU D CU A 302 1555 1555 2.08 LINK OG1 THR A 14 NA A NA A 502 1555 1555 2.95 LINK O GLY A 19 CU CU A 312 1555 1555 2.31 LINK NZ BLYS A 27 CU B CU A 308 1555 1555 2.52 LINK OD2AASP A 31 CU A CU A 306 1555 1555 2.14 LINK OD1BASP A 31 CU B CU A 306 1555 1555 2.02 LINK NE2AHIS A 32 CU A CU A 306 4566 1555 2.34 LINK NE2BHIS A 32 CU B CU A 306 4566 1555 2.51 LINK OE1 GLU A 38 CU B CU B 301 1555 1555 2.08 LINK OE1 GLU A 38 CU A CU B 301 1555 1555 1.88 LINK OE2BGLU A 51 CU CU A 304 1555 1555 1.97 LINK OD2 ASP A 58 CU CU A 303 1555 1555 2.09 LINK OD1 ASP A 58 CU CU A 303 1555 1555 2.68 LINK O ARG A 59 CU D CU A 302 1555 1555 2.66 LINK OD1AASN A 62 CU A CU A 302 1555 1555 2.03 LINK OD1BASN A 62 CU B CU A 302 1555 1555 2.77 LINK OD1BASN A 62 NA B NA A 501 1555 1555 2.91 LINK CU A CU A 302 O HOH A1219 1555 1555 2.26 LINK CU A CU A 302 OE1AGLU B 38 1555 5445 1.94 LINK CU B CU A 302 OE1BGLU B 38 1555 5445 2.19 LINK CU B CU A 302 OE2BGLU B 38 1555 5445 3.11 LINK CU A CU A 302 O HOH B 360 1555 5445 1.97 LINK CU B CU A 302 O HOH B 360 1555 5445 2.02 LINK CU C CU A 302 O HOH B 360 1555 5445 2.28 LINK CU D CU A 302 O HOH B 360 1555 5445 3.08 LINK CU CU A 303 O HOH A1205 1555 1555 1.99 LINK CU CU A 303 O HOH A1206 1555 1555 2.41 LINK CU CU A 303 NE2 HIS B 32 1555 7545 1.91 LINK CU CU A 304 O HOH A1270 1555 1555 2.64 LINK CU CU A 304 O AHOH A1271 1555 1555 2.03 LINK CU A CU A 306 OD2 ASP B 58 1555 1555 1.92 LINK CU B CU A 306 OD2 ASP B 58 1555 1555 1.96 LINK CU B CU A 306 O BHOH B 375 1555 1555 2.75 LINK CU A CU A 306 O AHOH B 375 1555 1555 1.55 LINK CU B CU A 306 O HOH B 376 1555 1555 2.19 LINK CU CU A 307 O HOH A1205 1555 1555 2.00 LINK CU CU A 307 O HOH A1208 1555 1555 1.95 LINK CU CU A 307 O HOH A1208 1555 3555 1.95 LINK CU CU A 307 O HOH A1218 1555 1555 2.08 LINK CU CU A 307 O HOH A1218 1555 3555 2.42 LINK CU CU A 307 O HOH A1281 1555 1555 2.09 LINK CU CU A 310 O HOH A1252 1555 1555 2.66 LINK CU CU A 311 O HOH A1264 1555 1555 2.46 LINK CU CU A 311 O HOH A1265 1555 1555 1.63 LINK CU CU A 312 O HOH A1203 1555 1555 2.47 LINK CU CU A 312 O HOH A1237 1555 1555 2.42 LINK CU CU A 312 O HOH B 392 1555 7545 2.36 LINK NA B NA A 501 O HOH A1214 1555 1555 2.84 LINK NA A NA A 501 O AHOH B 322 1555 5445 2.32 LINK NA B NA A 501 O HOH B 360 1555 5445 2.33 LINK NE2 HIS B 4 CU B CU B 301 1555 1555 1.93 LINK NE2 HIS B 4 CU A CU B 301 1555 1555 1.90 LINK O ARG B 59 CU A CU B 301 1555 1555 2.43 LINK OD1 ASN B 62 CU A CU B 301 1555 1555 2.19 LINK OD1 ASN B 62 CU B CU B 301 1555 1555 2.69 SITE 1 AC1 6 GLU A 38 CL A 401 HOH A1241 HIS B 4 SITE 2 AC1 6 ARG B 59 ASN B 62 SITE 1 AC2 8 HIS A 4 PRO A 12 ARG A 59 ASN A 62 SITE 2 AC2 8 NA A 501 HOH A1219 GLU B 38 HOH B 360 SITE 1 AC3 6 GLU A 2 ASP A 58 CU A 307 HOH A1205 SITE 2 AC3 6 HOH A1206 HIS B 32 SITE 1 AC4 3 GLU A 51 HOH A1270 HOH A1271 SITE 1 AC5 4 ARG A 59 SER B 8 ARG B 36 THR B 37 SITE 1 AC6 6 ASP A 31 HIS A 32 GLU B 2 ASP B 58 SITE 2 AC6 6 HOH B 375 HOH B 376 SITE 1 AC7 8 GLU A 2 CU A 303 HOH A1205 HOH A1206 SITE 2 AC7 8 HOH A1208 HOH A1218 HOH A1281 ASP B 31 SITE 1 AC8 6 LYS A 27 LYS A 47 CL A 401 HIS B 4 SITE 2 AC8 6 THR B 14 ARG B 59 SITE 1 AC9 3 GLU A 2 HOH A1206 TRP B 29 SITE 1 BC1 4 SER A 8 ARG A 36 THR A 37 HOH A1252 SITE 1 BC2 5 ASN A 48 HOH A1247 HOH A1264 HOH A1265 SITE 2 BC2 5 HOH A1286 SITE 1 BC3 6 GLY A 19 HOH A1203 HOH A1237 ARG B 30 SITE 2 BC3 6 HOH B 392 HOH B 394 SITE 1 BC4 6 LYS A 27 GLU A 38 CU A 308 HIS B 4 SITE 2 BC4 6 ARG B 59 CU B 301 SITE 1 BC5 7 PRO A 12 ASN A 62 CU A 302 HOH A1214 SITE 2 BC5 7 ASN B 5 HOH B 322 HOH B 360 SITE 1 BC6 4 THR A 14 LYS B 27 GLU B 38 HOH B 342 SITE 1 BC7 8 SER A 8 SER A 9 LYS A 47 ASN A 48 SITE 2 BC7 8 HOH A1265 HOH A1304 HOH A1317 HOH A1340 SITE 1 BC8 4 CYS A 43 SER A 45 VAL A 46 HOH A1268 CRYST1 46.808 47.287 90.018 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011109 0.00000