HEADER TRANSFERASE 24-DEC-03 1V7V TITLE CRYSTAL STRUCTURE OF VIBRIO PROTEOLYTICUS CHITOBIOSE PHOSPHORYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITOBIOSE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 671; SOURCE 4 GENE: CHBP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30B-CHBP KEYWDS BETA-SANDWICH, (ALPHA/ALPHA)6 BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HIDAKA,Y.HONDA,S.NIRASAWA,M.KITAOKA,K.HAYASHI,T.WAKAGI,H.SHOUN, AUTHOR 2 S.FUSHINOBU REVDAT 4 27-DEC-23 1V7V 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1V7V 1 VERSN REVDAT 2 24-FEB-09 1V7V 1 VERSN REVDAT 1 22-JUN-04 1V7V 0 JRNL AUTH M.HIDAKA,Y.HONDA,M.KITAOKA,S.NIRASAWA,K.HAYASHI,T.WAKAGI, JRNL AUTH 2 H.SHOUN,S.FUSHINOBU JRNL TITL CHITOBIOSE PHOSPHORYLASE FROM VIBRIO PROTEOLYTICUS, A MEMBER JRNL TITL 2 OF GLYCOSYL TRANSFERASE FAMILY 36, HAS A CLAN GH-L-LIKE JRNL TITL 3 (ALPHA/ALPHA)(6) BARREL FOLD. JRNL REF STRUCTURE V. 12 937 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15274915 JRNL DOI 10.1016/J.STR.2004.03.027 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.HONDA,M.KITAOKA,K.HAYASHI REMARK 1 TITL REACTION MECHANISM OF CHITOBIOSE PHOSPHORYLASE FROM VIBRIO REMARK 1 TITL 2 PROTEOLYTICUS: IDENTIFICATION OF FAMILY 36 REMARK 1 TITL 3 GLYCOSYLTRANSFERASE IN VIBRIO REMARK 1 REF BIOCHEM.J. V. 377 225 2004 REMARK 1 REFN ISSN 0264-6021 REMARK 1 DOI 10.1042/BJ20031171 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2109709.680 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 70781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3588 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10863 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 571 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 676 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.38000 REMARK 3 B22 (A**2) : 3.32000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.870 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.450 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.540 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 51.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000006316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.97120, 0.97848, REMARK 200 0.97960 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ACSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70781 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : 0.22800 REMARK 200 FOR SHELL : 5.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, HEPES, CALCIUM CHLORIDE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.47300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.47300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: 1-X, Y, 1-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 129.25278 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.18630 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 ASP A 398 REMARK 465 VAL A 399 REMARK 465 ALA A 400 REMARK 465 PRO A 401 REMARK 465 SER A 402 REMARK 465 LYS A 403 REMARK 465 SER A 404 REMARK 465 PRO A 405 REMARK 465 THR A 406 REMARK 465 VAL A 407 REMARK 465 VAL A 408 REMARK 465 PRO A 409 REMARK 465 THR A 410 REMARK 465 PRO A 411 REMARK 465 SER A 412 REMARK 465 ASP A 413 REMARK 465 GLU A 414 REMARK 465 ASP A 415 REMARK 465 LYS A 416 REMARK 465 HIS A 802 REMARK 465 HIS A 803 REMARK 465 HIS A 804 REMARK 465 HIS A 805 REMARK 465 HIS A 806 REMARK 465 HIS A 807 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 44.41 -85.55 REMARK 500 GLU A 31 -82.21 -121.12 REMARK 500 ASN A 48 -62.43 65.11 REMARK 500 PRO A 67 -167.48 -79.76 REMARK 500 ASN A 114 51.54 39.16 REMARK 500 ASP A 129 67.94 -106.21 REMARK 500 SER A 158 -47.23 82.55 REMARK 500 PRO A 180 115.02 -38.29 REMARK 500 PHE A 194 -68.21 -94.20 REMARK 500 ALA A 238 123.99 -171.60 REMARK 500 CYS A 241 160.42 81.25 REMARK 500 TYR A 242 -164.22 72.52 REMARK 500 ALA A 319 -74.30 -154.04 REMARK 500 SER A 332 -156.49 70.89 REMARK 500 SER A 336 -154.52 -150.35 REMARK 500 ASP A 492 69.76 -69.65 REMARK 500 LYS A 636 -129.77 45.66 REMARK 500 ARG A 658 78.87 -108.93 REMARK 500 ILE A 682 -55.41 73.14 REMARK 500 HIS A 700 123.45 -37.80 REMARK 500 HIS A 705 74.63 72.45 REMARK 500 TRP A 707 -78.09 66.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 127 O REMARK 620 2 GLY A 791 O 154.4 REMARK 620 3 ASP A 793 OD2 89.2 90.2 REMARK 620 4 HOH A1048 O 63.5 141.4 80.4 REMARK 620 5 HOH A1088 O 82.5 72.0 84.1 142.5 REMARK 620 6 HOH A1341 O 90.4 83.6 164.7 112.9 80.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 140 O REMARK 620 2 GLU A 459 OE1 78.6 REMARK 620 3 GLU A 459 OE2 80.3 52.8 REMARK 620 4 HOH A1279 O 86.8 146.7 153.0 REMARK 620 5 HOH A1412 O 91.1 142.2 89.7 66.8 REMARK 620 6 HOH A1435 O 163.8 100.1 86.1 101.8 80.1 REMARK 620 7 HOH A1678 O 102.7 72.9 124.3 81.6 144.7 92.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 186 OD1 REMARK 620 2 LEU A 187 O 83.9 REMARK 620 3 ASN A 190 O 161.0 79.9 REMARK 620 4 GLY A 196 O 87.6 87.6 101.4 REMARK 620 5 HOH A1227 O 87.1 84.2 81.5 170.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V7W RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH GLCNAC REMARK 900 RELATED ID: 1V7X RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH GLCNAC AND SULFATE DBREF 1V7V A 1 801 UNP Q76IQ9 Q76IQ9_VIBPR 1 801 SEQADV 1V7V HIS A 802 UNP Q76IQ9 EXPRESSION TAG SEQADV 1V7V HIS A 803 UNP Q76IQ9 EXPRESSION TAG SEQADV 1V7V HIS A 804 UNP Q76IQ9 EXPRESSION TAG SEQADV 1V7V HIS A 805 UNP Q76IQ9 EXPRESSION TAG SEQADV 1V7V HIS A 806 UNP Q76IQ9 EXPRESSION TAG SEQADV 1V7V HIS A 807 UNP Q76IQ9 EXPRESSION TAG SEQRES 1 A 807 MET LYS TYR GLY TYR PHE ASP ASN ASP ASN ARG GLU TYR SEQRES 2 A 807 VAL ILE THR ARG PRO ASP VAL PRO ALA PRO TRP THR ASN SEQRES 3 A 807 TYR LEU GLY THR GLU LYS PHE CYS THR VAL ILE SER HIS SEQRES 4 A 807 ASN ALA GLY GLY TYR SER PHE TYR ASN SER PRO GLU TYR SEQRES 5 A 807 ASN ARG VAL THR LYS PHE ARG PRO ASN ALA THR PHE ASP SEQRES 6 A 807 ARG PRO GLY HIS TYR VAL TYR LEU ARG ASP ASP ASP SER SEQRES 7 A 807 GLY ASP TYR TRP SER ILE SER TRP GLN PRO VAL ALA LYS SEQRES 8 A 807 SER LEU ASP GLU ALA GLN TYR GLN ILE ARG HIS GLY LEU SEQRES 9 A 807 SER TYR SER LYS PHE GLN CYS ASP TYR ASN GLY ILE HIS SEQRES 10 A 807 ALA ARG LYS THR LEU PHE VAL PRO LYS GLY GLU ASP ALA SEQRES 11 A 807 GLU ILE TRP ASP VAL VAL ILE LYS ASN THR SER ASP GLN SEQRES 12 A 807 VAL ARG THR ILE SER ALA PHE SER PHE VAL GLU PHE SER SEQRES 13 A 807 PHE SER HIS ILE GLN SER ASP ASN GLN ASN HIS GLN MET SEQRES 14 A 807 SER LEU TYR SER ALA GLY THR ALA TYR ARG PRO GLY LEU SEQRES 15 A 807 ILE GLU TYR ASP LEU TYR TYR ASN THR ASP ASP PHE GLU SEQRES 16 A 807 GLY PHE TYR TYR LEU ALA SER THR PHE ASP PRO ASP SER SEQRES 17 A 807 TYR ASP GLY GLN ARG ASP ARG PHE LEU GLY LEU TYR ARG SEQRES 18 A 807 ASP GLU ALA ASN PRO LEU ALA VAL GLU GLN GLY ARG CYS SEQRES 19 A 807 SER ASN SER ALA GLN THR CYS TYR ASN HIS CYS GLY SER SEQRES 20 A 807 LEU HIS LYS GLN PHE THR LEU GLN PRO GLY GLU GLU ILE SEQRES 21 A 807 ARG PHE ALA TYR ILE LEU GLY ILE GLY LYS GLY ASN GLY SEQRES 22 A 807 GLU ARG LEU ARG GLU HIS TYR GLN ASP VAL ALA ASN ILE SEQRES 23 A 807 ASP ALA ALA PHE ALA ALA ILE LYS ALA HIS TRP ASP GLU SEQRES 24 A 807 ARG CYS ALA LYS PHE GLN VAL LYS SER PRO ASN GLN GLY SEQRES 25 A 807 LEU ASP THR MET ILE ASN ALA TRP THR LEU TYR GLN ALA SEQRES 26 A 807 GLU THR CYS VAL VAL TRP SER ARG PHE ALA SER PHE ILE SEQRES 27 A 807 GLU VAL GLY GLY ARG THR GLY LEU GLY TYR ARG ASP THR SEQRES 28 A 807 ALA GLN ASP ALA ILE SER VAL PRO HIS ALA ASN PRO GLU SEQRES 29 A 807 MET THR ARG LYS ARG ILE VAL ASP LEU LEU ARG GLY GLN SEQRES 30 A 807 VAL LYS ALA GLY TYR GLY LEU HIS LEU PHE ASP PRO ASP SEQRES 31 A 807 TRP PHE ASP PRO GLU LYS GLU ASP VAL ALA PRO SER LYS SEQRES 32 A 807 SER PRO THR VAL VAL PRO THR PRO SER ASP GLU ASP LYS SEQRES 33 A 807 ILE HIS GLY ILE LYS ASP THR CYS SER ASP ASP HIS LEU SEQRES 34 A 807 TRP LEU ILE PRO THR ILE CYS LYS TYR VAL MET GLU THR SEQRES 35 A 807 GLY GLU THR SER PHE PHE ASP GLN MET ILE PRO TYR ALA SEQRES 36 A 807 ASP GLY GLY GLU ALA SER VAL TYR GLU HIS MET LYS ALA SEQRES 37 A 807 ALA LEU ASP PHE SER ALA GLU TYR VAL GLY GLN THR GLY SEQRES 38 A 807 ILE CYS LYS GLY LEU ARG ALA ASP TRP ASN ASP CYS LEU SEQRES 39 A 807 ASN LEU GLY GLY GLY GLU SER SER MET VAL SER PHE LEU SEQRES 40 A 807 HIS PHE TRP ALA LEU GLN GLU PHE ILE ASP LEU ALA LYS SEQRES 41 A 807 PHE LEU GLY LYS ASP GLN ASP VAL ASN THR TYR THR GLU SEQRES 42 A 807 MET ALA ALA ASN VAL ARG GLU ALA CYS GLU THR HIS LEU SEQRES 43 A 807 TRP ASP ASP GLU GLY GLY TRP TYR ILE ARG GLY LEU THR SEQRES 44 A 807 LYS ASN GLY ASP LYS ILE GLY THR ALA GLN GLN GLN GLU SEQRES 45 A 807 GLY ARG VAL HIS LEU GLU SER ASN THR LEU ALA VAL LEU SEQRES 46 A 807 SER GLY LEU ALA SER GLN GLU ARG GLY GLU GLN ALA MET SEQRES 47 A 807 ASP ALA VAL ASP GLU HIS LEU PHE SER PRO TYR GLY LEU SEQRES 48 A 807 HIS LEU ASN ALA PRO SER PHE SER THR PRO ASN ASP ASP SEQRES 49 A 807 ILE GLY PHE VAL THR ARG VAL TYR GLN GLY VAL LYS GLU SEQRES 50 A 807 ASN GLY ALA ILE PHE SER HIS PRO ASN PRO TRP ALA TRP SEQRES 51 A 807 VAL ALA GLU THR LYS LEU GLY ARG GLY ASP ARG ALA MET SEQRES 52 A 807 LYS PHE TYR ASP ALA LEU ASN PRO TYR ASN GLN ASN ASP SEQRES 53 A 807 ILE ILE GLU LYS ARG ILE ALA GLU PRO TYR SER TYR VAL SEQRES 54 A 807 GLN PHE ILE MET GLY ARG ASP HIS GLN ASP HIS GLY ARG SEQRES 55 A 807 ALA ASN HIS PRO TRP LEU THR GLY THR SER GLY TRP ALA SEQRES 56 A 807 TYR PHE ALA VAL THR ASN TYR ILE LEU GLY VAL GLN SER SEQRES 57 A 807 GLY PHE THR GLY LEU SER VAL ASP PRO CYS ILE PRO SER SEQRES 58 A 807 ASP TRP PRO GLY PHE GLU VAL THR ARG GLN TRP ARG GLY SEQRES 59 A 807 ALA THR TYR HIS ILE GLN VAL GLU ASN PRO ASP HIS VAL SEQRES 60 A 807 SER LYS GLY VAL LYS SER ILE THR LEU ASN GLY ALA PRO SEQRES 61 A 807 ILE GLN GLY ARG ILE PRO PRO GLN ALA GLN GLY SER ASP SEQRES 62 A 807 ASN GLN VAL VAL VAL VAL LEU GLY HIS HIS HIS HIS HIS SEQRES 63 A 807 HIS HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *676(H2 O) HELIX 1 1 HIS A 159 GLN A 165 1 7 HELIX 2 2 ASN A 166 LEU A 171 1 6 HELIX 3 3 ARG A 213 GLY A 218 1 6 HELIX 4 4 PRO A 226 GLY A 232 1 7 HELIX 5 5 GLY A 271 TYR A 280 1 10 HELIX 6 6 ASP A 282 ALA A 302 1 21 HELIX 7 7 ASN A 310 ASN A 318 1 9 HELIX 8 8 ALA A 319 SER A 332 1 14 HELIX 9 9 TYR A 348 ALA A 355 1 8 HELIX 10 10 ASN A 362 GLY A 376 1 15 HELIX 11 11 ASP A 388 ASP A 393 5 6 HELIX 12 12 GLY A 419 THR A 423 5 5 HELIX 13 13 ASP A 426 GLY A 443 1 18 HELIX 14 14 GLU A 444 ASP A 449 5 6 HELIX 15 15 VAL A 462 TYR A 476 1 15 HELIX 16 16 SER A 502 GLY A 523 1 22 HELIX 17 17 LYS A 524 LEU A 546 1 23 HELIX 18 18 LEU A 577 SER A 586 1 10 HELIX 19 19 SER A 590 LEU A 605 1 16 HELIX 20 20 GLY A 626 VAL A 631 5 6 HELIX 21 21 PRO A 645 LEU A 656 1 12 HELIX 22 22 ARG A 658 ASN A 670 1 13 HELIX 23 23 PRO A 671 ASN A 675 5 5 HELIX 24 24 ILE A 677 ILE A 682 1 6 HELIX 25 25 GLY A 710 TYR A 722 1 13 SHEET 1 A10 GLY A 4 ASP A 7 0 SHEET 2 A10 GLU A 12 ILE A 15 -1 O GLU A 12 N ASP A 7 SHEET 3 A10 ALA A 96 GLY A 103 -1 O ILE A 100 N ILE A 15 SHEET 4 A10 TYR A 106 TYR A 113 -1 O TYR A 106 N GLY A 103 SHEET 5 A10 ILE A 116 PHE A 123 -1 O LYS A 120 N PHE A 109 SHEET 6 A10 ALA A 130 ASN A 139 -1 O LYS A 138 N HIS A 117 SHEET 7 A10 GLU A 259 ILE A 268 -1 O LEU A 266 N GLU A 131 SHEET 8 A10 PHE A 197 SER A 202 -1 N ALA A 201 O ILE A 265 SHEET 9 A10 LEU A 182 LEU A 187 -1 N ILE A 183 O LEU A 200 SHEET 10 A10 ALA A 174 ARG A 179 -1 N GLY A 175 O ASP A 186 SHEET 1 B 3 THR A 25 LEU A 28 0 SHEET 2 B 3 PHE A 33 SER A 38 -1 O THR A 35 N LEU A 28 SHEET 3 B 3 GLY A 43 TYR A 47 -1 O TYR A 44 N VAL A 36 SHEET 1 C 5 TYR A 81 SER A 83 0 SHEET 2 C 5 TYR A 70 ASP A 75 -1 N LEU A 73 O TRP A 82 SHEET 3 C 5 ARG A 145 PHE A 152 -1 O PHE A 150 N TYR A 72 SHEET 4 C 5 HIS A 244 LEU A 254 -1 O LEU A 254 N ARG A 145 SHEET 5 C 5 SER A 208 GLN A 212 -1 N SER A 208 O HIS A 249 SHEET 1 D 6 PHE A 304 LYS A 307 0 SHEET 2 D 6 GLY A 745 TRP A 752 -1 O GLU A 747 N LYS A 307 SHEET 3 D 6 ALA A 755 GLU A 762 -1 O VAL A 761 N PHE A 746 SHEET 4 D 6 ASP A 793 LEU A 800 1 O ASN A 794 N HIS A 758 SHEET 5 D 6 VAL A 771 LEU A 776 -1 N SER A 773 O VAL A 799 SHEET 6 D 6 ALA A 779 ILE A 781 -1 O ALA A 779 N LEU A 776 SHEET 1 E 2 LEU A 346 GLY A 347 0 SHEET 2 E 2 LEU A 386 PHE A 387 -1 O PHE A 387 N LEU A 346 SHEET 1 F 2 MET A 451 PRO A 453 0 SHEET 2 F 2 GLU A 459 SER A 461 -1 O ALA A 460 N ILE A 452 SHEET 1 G 4 LYS A 484 LEU A 486 0 SHEET 2 G 4 ASN A 495 SER A 501 -1 O ASN A 495 N LEU A 486 SHEET 3 G 4 GLY A 557 LEU A 558 -1 O LEU A 558 N GLU A 500 SHEET 4 G 4 LYS A 564 ILE A 565 -1 O ILE A 565 N GLY A 557 SHEET 1 H 2 TRP A 547 ASP A 548 0 SHEET 2 H 2 TRP A 553 TYR A 554 -1 O TRP A 553 N ASP A 548 SHEET 1 I 2 VAL A 575 HIS A 576 0 SHEET 2 I 2 ASN A 614 ALA A 615 -1 O ALA A 615 N VAL A 575 SHEET 1 J 2 PHE A 606 SER A 607 0 SHEET 2 J 2 GLY A 610 LEU A 611 -1 O GLY A 610 N SER A 607 SHEET 1 K 3 ILE A 641 PHE A 642 0 SHEET 2 K 3 VAL A 689 ILE A 692 -1 O ILE A 692 N ILE A 641 SHEET 3 K 3 ALA A 703 PRO A 706 -1 O ASN A 704 N PHE A 691 SHEET 1 L 2 VAL A 726 SER A 728 0 SHEET 2 L 2 LEU A 733 VAL A 735 -1 O SER A 734 N GLN A 727 SSBOND 1 CYS A 424 CYS A 493 1555 1555 2.03 LINK O GLY A 127 CA CA A1002 2655 1555 2.39 LINK O THR A 140 CA CA A1003 1565 1555 2.35 LINK OD1 ASP A 186 CA CA A1001 1555 1555 2.31 LINK O LEU A 187 CA CA A1001 1555 1555 2.42 LINK O ASN A 190 CA CA A1001 1555 1555 2.43 LINK O GLY A 196 CA CA A1001 1555 1555 2.70 LINK OE1 GLU A 459 CA CA A1003 1555 1555 2.36 LINK OE2 GLU A 459 CA CA A1003 1555 1555 2.56 LINK O GLY A 791 CA CA A1002 1555 1555 2.51 LINK OD2 ASP A 793 CA CA A1002 1555 1555 2.51 LINK CA CA A1001 O HOH A1227 1555 1555 2.30 LINK CA CA A1002 O HOH A1048 1555 1555 2.15 LINK CA CA A1002 O HOH A1088 1555 2655 2.25 LINK CA CA A1002 O HOH A1341 1555 1555 2.34 LINK CA CA A1003 O HOH A1279 1555 1565 2.59 LINK CA CA A1003 O HOH A1412 1555 1555 2.97 LINK CA CA A1003 O HOH A1435 1555 1555 2.41 LINK CA CA A1003 O HOH A1678 1555 1555 2.22 CISPEP 1 ARG A 66 PRO A 67 0 -1.60 CISPEP 2 GLN A 87 PRO A 88 0 1.35 CISPEP 3 ALA A 615 PRO A 616 0 -1.82 SITE 1 AC1 6 ASP A 186 LEU A 187 ASN A 190 GLY A 196 SITE 2 AC1 6 PHE A 197 HOH A1227 SITE 1 AC2 6 GLY A 127 GLY A 791 ASP A 793 HOH A1048 SITE 2 AC2 6 HOH A1088 HOH A1341 SITE 1 AC3 6 THR A 140 GLU A 459 HOH A1279 HOH A1412 SITE 2 AC3 6 HOH A1435 HOH A1678 CRYST1 140.946 70.580 80.045 90.00 98.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007095 0.000000 0.001048 0.00000 SCALE2 0.000000 0.014168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012629 0.00000