HEADER CONTRACTILE PROTEIN 12-FEB-04 1VA7 TITLE YEAST MYO3 SH3 DOMAIN, TRICLINIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-3 ISOFORM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: MYO3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS STRUCTURAL GENOMICS, SH3 DOMAIN, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KURSULA,F.LEHMANN,Y.H.SONG,M.WILMANNS REVDAT 4 25-OCT-23 1VA7 1 REMARK SEQADV REVDAT 3 13-JUL-11 1VA7 1 VERSN REVDAT 2 24-FEB-09 1VA7 1 VERSN REVDAT 1 14-JUN-05 1VA7 0 JRNL AUTH P.KURSULA,F.LEHMANN,Y.H.SONG,M.WILMANNS JRNL TITL HIGH-THROUGHPUT STRUCTURAL GENOMICS OF YEAST SH3 DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 6220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 440 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.86000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : -2.58000 REMARK 3 B12 (A**2) : -0.64000 REMARK 3 B13 (A**2) : -1.53000 REMARK 3 B23 (A**2) : 6.61000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.484 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.436 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.846 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2054 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1786 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2784 ; 1.294 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4222 ; 0.789 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 6.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2248 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 398 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 307 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1795 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1149 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 23 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1280 ; 0.175 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2060 ; 0.285 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 774 ; 0.408 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 724 ; 0.562 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 61 1 REMARK 3 1 B 3 B 61 1 REMARK 3 1 C 3 C 61 1 REMARK 3 1 D 3 D 61 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 860 ; 0.03 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 860 ; 0.03 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 860 ; 0.03 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 860 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 860 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 860 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 860 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 860 ; 0.05 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2494 -0.6219 0.2925 REMARK 3 T TENSOR REMARK 3 T11: 0.2812 T22: 0.2407 REMARK 3 T33: 0.2337 T12: -0.0072 REMARK 3 T13: -0.0340 T23: -0.1205 REMARK 3 L TENSOR REMARK 3 L11: 8.4311 L22: 3.4952 REMARK 3 L33: 2.9893 L12: -1.2325 REMARK 3 L13: -0.7424 L23: -0.5343 REMARK 3 S TENSOR REMARK 3 S11: -0.3105 S12: -0.3892 S13: 0.3789 REMARK 3 S21: -0.1955 S22: 0.3015 S23: -0.5001 REMARK 3 S31: -0.1272 S32: 0.2481 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1610 -8.1900 -13.0476 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.1738 REMARK 3 T33: 0.2414 T12: -0.0798 REMARK 3 T13: 0.0244 T23: -0.1996 REMARK 3 L TENSOR REMARK 3 L11: 11.9860 L22: 1.3493 REMARK 3 L33: 2.4651 L12: -0.3282 REMARK 3 L13: 0.7386 L23: -2.5687 REMARK 3 S TENSOR REMARK 3 S11: -0.2589 S12: 0.3459 S13: -0.4322 REMARK 3 S21: -0.0383 S22: 0.1702 S23: -0.3741 REMARK 3 S31: 0.5062 S32: 0.3685 S33: 0.0887 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 62 REMARK 3 RESIDUE RANGE : C 71 C 71 REMARK 3 ORIGIN FOR THE GROUP (A): -29.5134 0.4357 -28.4765 REMARK 3 T TENSOR REMARK 3 T11: 0.4170 T22: 0.1349 REMARK 3 T33: 0.2569 T12: 0.0151 REMARK 3 T13: -0.0417 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 7.9696 L22: 2.8190 REMARK 3 L33: 9.1717 L12: 2.2755 REMARK 3 L13: 1.3116 L23: 0.5790 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: 0.0107 S13: -0.1716 REMARK 3 S21: -0.7223 S22: -0.0022 S23: 0.3216 REMARK 3 S31: -0.6493 S32: -0.3631 S33: 0.0929 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 62 REMARK 3 RESIDUE RANGE : D 71 D 71 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2545 -9.3450 15.6622 REMARK 3 T TENSOR REMARK 3 T11: 0.4399 T22: 0.0766 REMARK 3 T33: 0.2228 T12: -0.0636 REMARK 3 T13: -0.0008 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 12.0048 L22: 5.5302 REMARK 3 L33: 10.4122 L12: -2.7139 REMARK 3 L13: -0.5451 L23: 1.0997 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.0865 S13: 0.2385 REMARK 3 S21: 1.0015 S22: 0.2158 S23: 0.2674 REMARK 3 S31: 0.7593 S32: -0.6864 S33: -0.2203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000006400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8115 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6221 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RUW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, GLYCEROL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH CHAIN IS AN INDEPENDENT BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 GLY B 1 REMARK 465 LYS B 2 REMARK 465 GLY C 1 REMARK 465 LYS C 2 REMARK 465 ASP C 63 REMARK 465 THR C 64 REMARK 465 ARG C 65 REMARK 465 ASN C 66 REMARK 465 THR C 67 REMARK 465 VAL C 68 REMARK 465 PRO C 69 REMARK 465 VAL C 70 REMARK 465 GLY D 1 REMARK 465 LYS D 2 REMARK 465 ASP D 63 REMARK 465 THR D 64 REMARK 465 ARG D 65 REMARK 465 ASN D 66 REMARK 465 THR D 67 REMARK 465 VAL D 68 REMARK 465 PRO D 69 REMARK 465 VAL D 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 11 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 11 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP C 3 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP D 3 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP D 11 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 67 42.65 -93.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 71 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RUW RELATED DB: PDB REMARK 900 SPACE GROUP I222 DBREF 1VA7 A 2 70 UNP P36006 MYO3_YEAST 1122 1190 DBREF 1VA7 B 2 70 UNP P36006 MYO3_YEAST 1122 1190 DBREF 1VA7 C 2 70 UNP P36006 MYO3_YEAST 1122 1190 DBREF 1VA7 D 2 70 UNP P36006 MYO3_YEAST 1122 1190 SEQADV 1VA7 GLY A 1 UNP P36006 CLONING ARTIFACT SEQADV 1VA7 GLY B 1 UNP P36006 CLONING ARTIFACT SEQADV 1VA7 GLY C 1 UNP P36006 CLONING ARTIFACT SEQADV 1VA7 GLY D 1 UNP P36006 CLONING ARTIFACT SEQRES 1 A 70 GLY LYS ASP PRO LYS PHE GLU ALA ALA TYR ASP PHE PRO SEQRES 2 A 70 GLY SER GLY SER SER SER GLU LEU PRO LEU LYS LYS GLY SEQRES 3 A 70 ASP ILE VAL PHE ILE SER ARG ASP GLU PRO SER GLY TRP SEQRES 4 A 70 SER LEU ALA LYS LEU LEU ASP GLY SER LYS GLU GLY TRP SEQRES 5 A 70 VAL PRO THR ALA TYR MET THR PRO TYR LYS ASP THR ARG SEQRES 6 A 70 ASN THR VAL PRO VAL SEQRES 1 B 70 GLY LYS ASP PRO LYS PHE GLU ALA ALA TYR ASP PHE PRO SEQRES 2 B 70 GLY SER GLY SER SER SER GLU LEU PRO LEU LYS LYS GLY SEQRES 3 B 70 ASP ILE VAL PHE ILE SER ARG ASP GLU PRO SER GLY TRP SEQRES 4 B 70 SER LEU ALA LYS LEU LEU ASP GLY SER LYS GLU GLY TRP SEQRES 5 B 70 VAL PRO THR ALA TYR MET THR PRO TYR LYS ASP THR ARG SEQRES 6 B 70 ASN THR VAL PRO VAL SEQRES 1 C 70 GLY LYS ASP PRO LYS PHE GLU ALA ALA TYR ASP PHE PRO SEQRES 2 C 70 GLY SER GLY SER SER SER GLU LEU PRO LEU LYS LYS GLY SEQRES 3 C 70 ASP ILE VAL PHE ILE SER ARG ASP GLU PRO SER GLY TRP SEQRES 4 C 70 SER LEU ALA LYS LEU LEU ASP GLY SER LYS GLU GLY TRP SEQRES 5 C 70 VAL PRO THR ALA TYR MET THR PRO TYR LYS ASP THR ARG SEQRES 6 C 70 ASN THR VAL PRO VAL SEQRES 1 D 70 GLY LYS ASP PRO LYS PHE GLU ALA ALA TYR ASP PHE PRO SEQRES 2 D 70 GLY SER GLY SER SER SER GLU LEU PRO LEU LYS LYS GLY SEQRES 3 D 70 ASP ILE VAL PHE ILE SER ARG ASP GLU PRO SER GLY TRP SEQRES 4 D 70 SER LEU ALA LYS LEU LEU ASP GLY SER LYS GLU GLY TRP SEQRES 5 D 70 VAL PRO THR ALA TYR MET THR PRO TYR LYS ASP THR ARG SEQRES 6 D 70 ASN THR VAL PRO VAL HET GOL C 71 6 HET GOL D 71 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) SHEET 1 A 5 GLU A 50 PRO A 54 0 SHEET 2 A 5 TRP A 39 LEU A 44 -1 N SER A 40 O VAL A 53 SHEET 3 A 5 ILE A 28 ASP A 34 -1 N ARG A 33 O LEU A 41 SHEET 4 A 5 LYS A 5 ALA A 8 -1 N PHE A 6 O VAL A 29 SHEET 5 A 5 MET A 58 PRO A 60 -1 O THR A 59 N GLU A 7 SHEET 1 B 5 GLU B 50 PRO B 54 0 SHEET 2 B 5 TRP B 39 LEU B 44 -1 N SER B 40 O VAL B 53 SHEET 3 B 5 ILE B 28 ASP B 34 -1 N PHE B 30 O LYS B 43 SHEET 4 B 5 LYS B 5 ALA B 8 -1 N PHE B 6 O VAL B 29 SHEET 5 B 5 MET B 58 PRO B 60 -1 O THR B 59 N GLU B 7 SHEET 1 C 5 GLU C 50 PRO C 54 0 SHEET 2 C 5 TRP C 39 LEU C 44 -1 N SER C 40 O VAL C 53 SHEET 3 C 5 ILE C 28 ASP C 34 -1 N ARG C 33 O LEU C 41 SHEET 4 C 5 LYS C 5 ALA C 8 -1 N PHE C 6 O VAL C 29 SHEET 5 C 5 MET C 58 PRO C 60 -1 O THR C 59 N GLU C 7 SHEET 1 D 5 GLU D 50 PRO D 54 0 SHEET 2 D 5 TRP D 39 LEU D 44 -1 N SER D 40 O VAL D 53 SHEET 3 D 5 ILE D 28 ASP D 34 -1 N ARG D 33 O LEU D 41 SHEET 4 D 5 LYS D 5 ALA D 8 -1 N PHE D 6 O VAL D 29 SHEET 5 D 5 MET D 58 PRO D 60 -1 O THR D 59 N GLU D 7 SITE 1 AC1 1 GLU C 20 CRYST1 38.800 48.750 48.840 60.70 70.74 70.60 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025773 -0.009077 -0.005676 0.00000 SCALE2 0.000000 0.021748 -0.010257 0.00000 SCALE3 0.000000 0.000000 0.023980 0.00000