data_1VAK # _entry.id 1VAK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VAK pdb_00001vak 10.2210/pdb1vak/pdb RCSB RCSB006409 ? ? WWPDB D_1000006409 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_pdbx_struct_oper_list.name' 15 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 16 4 'Structure model' '_pdbx_struct_oper_list.type' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VAK _pdbx_database_status.recvd_initial_deposition_date 2004-02-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1SMV _pdbx_database_related.details 'Primary structure of sesbania mosaic virus coat protein' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sangita, V.' 1 'Lokesh, G.L.' 2 'Satheshkumer, P.S.' 3 'Vijay, C.S.' 4 'Saravanan, V.' 5 'Savithri, H.S.' 6 'Murthy, M.R.' 7 # _citation.id primary _citation.title 'T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 342 _citation.page_first 987 _citation.page_last 999 _citation.year 2004 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15342251 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2004.07.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sangita, V.' 1 ? primary 'Lokesh, G.L.' 2 ? primary 'Satheshkumar, P.S.' 3 ? primary 'Vijay, C.S.' 4 ? primary 'Saravanan, V.' 5 ? primary 'Savithri, H.S.' 6 ? primary 'Murthy, M.R.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'coat protein' 21471.213 1 ? ? 'residues 66-268' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AVSSSRGGITVLTHSELSAEIGVTDSIVVSSELVMPYTVGTWLRGVAANWSKYSWLSVRYTYIPSCPSSTAGSIHMGFQY DMADTVPVSVNQLSNLRGYVSGQVWSGSAGLCFINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIAT PLVPARLVIALLDGSSSTAVAAGRIYCTYTIQMIEPTASALNN ; _entity_poly.pdbx_seq_one_letter_code_can ;AVSSSRGGITVLTHSELSAEIGVTDSIVVSSELVMPYTVGTWLRGVAANWSKYSWLSVRYTYIPSCPSSTAGSIHMGFQY DMADTVPVSVNQLSNLRGYVSGQVWSGSAGLCFINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIAT PLVPARLVIALLDGSSSTAVAAGRIYCTYTIQMIEPTASALNN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 VAL n 1 3 SER n 1 4 SER n 1 5 SER n 1 6 ARG n 1 7 GLY n 1 8 GLY n 1 9 ILE n 1 10 THR n 1 11 VAL n 1 12 LEU n 1 13 THR n 1 14 HIS n 1 15 SER n 1 16 GLU n 1 17 LEU n 1 18 SER n 1 19 ALA n 1 20 GLU n 1 21 ILE n 1 22 GLY n 1 23 VAL n 1 24 THR n 1 25 ASP n 1 26 SER n 1 27 ILE n 1 28 VAL n 1 29 VAL n 1 30 SER n 1 31 SER n 1 32 GLU n 1 33 LEU n 1 34 VAL n 1 35 MET n 1 36 PRO n 1 37 TYR n 1 38 THR n 1 39 VAL n 1 40 GLY n 1 41 THR n 1 42 TRP n 1 43 LEU n 1 44 ARG n 1 45 GLY n 1 46 VAL n 1 47 ALA n 1 48 ALA n 1 49 ASN n 1 50 TRP n 1 51 SER n 1 52 LYS n 1 53 TYR n 1 54 SER n 1 55 TRP n 1 56 LEU n 1 57 SER n 1 58 VAL n 1 59 ARG n 1 60 TYR n 1 61 THR n 1 62 TYR n 1 63 ILE n 1 64 PRO n 1 65 SER n 1 66 CYS n 1 67 PRO n 1 68 SER n 1 69 SER n 1 70 THR n 1 71 ALA n 1 72 GLY n 1 73 SER n 1 74 ILE n 1 75 HIS n 1 76 MET n 1 77 GLY n 1 78 PHE n 1 79 GLN n 1 80 TYR n 1 81 ASP n 1 82 MET n 1 83 ALA n 1 84 ASP n 1 85 THR n 1 86 VAL n 1 87 PRO n 1 88 VAL n 1 89 SER n 1 90 VAL n 1 91 ASN n 1 92 GLN n 1 93 LEU n 1 94 SER n 1 95 ASN n 1 96 LEU n 1 97 ARG n 1 98 GLY n 1 99 TYR n 1 100 VAL n 1 101 SER n 1 102 GLY n 1 103 GLN n 1 104 VAL n 1 105 TRP n 1 106 SER n 1 107 GLY n 1 108 SER n 1 109 ALA n 1 110 GLY n 1 111 LEU n 1 112 CYS n 1 113 PHE n 1 114 ILE n 1 115 ASN n 1 116 GLY n 1 117 THR n 1 118 ARG n 1 119 CYS n 1 120 SER n 1 121 ASP n 1 122 THR n 1 123 SER n 1 124 THR n 1 125 ALA n 1 126 ILE n 1 127 SER n 1 128 THR n 1 129 THR n 1 130 LEU n 1 131 ASP n 1 132 VAL n 1 133 SER n 1 134 LYS n 1 135 LEU n 1 136 GLY n 1 137 LYS n 1 138 LYS n 1 139 TRP n 1 140 TYR n 1 141 PRO n 1 142 TYR n 1 143 LYS n 1 144 THR n 1 145 SER n 1 146 ALA n 1 147 ASP n 1 148 TYR n 1 149 ALA n 1 150 THR n 1 151 ALA n 1 152 VAL n 1 153 GLY n 1 154 VAL n 1 155 ASP n 1 156 VAL n 1 157 ASN n 1 158 ILE n 1 159 ALA n 1 160 THR n 1 161 PRO n 1 162 LEU n 1 163 VAL n 1 164 PRO n 1 165 ALA n 1 166 ARG n 1 167 LEU n 1 168 VAL n 1 169 ILE n 1 170 ALA n 1 171 LEU n 1 172 LEU n 1 173 ASP n 1 174 GLY n 1 175 SER n 1 176 SER n 1 177 SER n 1 178 THR n 1 179 ALA n 1 180 VAL n 1 181 ALA n 1 182 ALA n 1 183 GLY n 1 184 ARG n 1 185 ILE n 1 186 TYR n 1 187 CYS n 1 188 THR n 1 189 TYR n 1 190 THR n 1 191 ILE n 1 192 GLN n 1 193 MET n 1 194 ILE n 1 195 GLU n 1 196 PRO n 1 197 THR n 1 198 ALA n 1 199 SER n 1 200 ALA n 1 201 LEU n 1 202 ASN n 1 203 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sobemovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sesbania mosaic virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12558 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pRSET C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 66 ? ? ? A . n A 1 2 VAL 2 67 ? ? ? A . n A 1 3 SER 3 68 ? ? ? A . n A 1 4 SER 4 69 ? ? ? A . n A 1 5 SER 5 70 ? ? ? A . n A 1 6 ARG 6 71 ? ? ? A . n A 1 7 GLY 7 72 ? ? ? A . n A 1 8 GLY 8 73 73 GLY GLY A . n A 1 9 ILE 9 74 74 ILE ILE A . n A 1 10 THR 10 75 75 THR THR A . n A 1 11 VAL 11 76 76 VAL VAL A . n A 1 12 LEU 12 77 77 LEU LEU A . n A 1 13 THR 13 78 78 THR THR A . n A 1 14 HIS 14 79 79 HIS HIS A . n A 1 15 SER 15 80 80 SER SER A . n A 1 16 GLU 16 81 81 GLU GLU A . n A 1 17 LEU 17 82 82 LEU LEU A . n A 1 18 SER 18 83 83 SER SER A . n A 1 19 ALA 19 84 84 ALA ALA A . n A 1 20 GLU 20 85 85 GLU GLU A . n A 1 21 ILE 21 86 86 ILE ILE A . n A 1 22 GLY 22 87 87 GLY GLY A . n A 1 23 VAL 23 88 88 VAL VAL A . n A 1 24 THR 24 89 89 THR THR A . n A 1 25 ASP 25 90 90 ASP ASP A . n A 1 26 SER 26 91 91 SER SER A . n A 1 27 ILE 27 92 92 ILE ILE A . n A 1 28 VAL 28 93 93 VAL VAL A . n A 1 29 VAL 29 94 94 VAL VAL A . n A 1 30 SER 30 95 95 SER SER A . n A 1 31 SER 31 96 96 SER SER A . n A 1 32 GLU 32 97 97 GLU GLU A . n A 1 33 LEU 33 98 98 LEU LEU A . n A 1 34 VAL 34 99 99 VAL VAL A . n A 1 35 MET 35 100 100 MET MET A . n A 1 36 PRO 36 101 101 PRO PRO A . n A 1 37 TYR 37 102 102 TYR TYR A . n A 1 38 THR 38 103 103 THR THR A . n A 1 39 VAL 39 104 104 VAL VAL A . n A 1 40 GLY 40 105 105 GLY GLY A . n A 1 41 THR 41 106 106 THR THR A . n A 1 42 TRP 42 107 107 TRP TRP A . n A 1 43 LEU 43 108 108 LEU LEU A . n A 1 44 ARG 44 109 109 ARG ARG A . n A 1 45 GLY 45 110 110 GLY GLY A . n A 1 46 VAL 46 111 111 VAL VAL A . n A 1 47 ALA 47 112 112 ALA ALA A . n A 1 48 ALA 48 113 113 ALA ALA A . n A 1 49 ASN 49 114 114 ASN ASN A . n A 1 50 TRP 50 115 115 TRP TRP A . n A 1 51 SER 51 116 116 SER SER A . n A 1 52 LYS 52 117 117 LYS LYS A . n A 1 53 TYR 53 118 118 TYR TYR A . n A 1 54 SER 54 119 119 SER SER A . n A 1 55 TRP 55 120 120 TRP TRP A . n A 1 56 LEU 56 121 121 LEU LEU A . n A 1 57 SER 57 122 122 SER SER A . n A 1 58 VAL 58 123 123 VAL VAL A . n A 1 59 ARG 59 124 124 ARG ARG A . n A 1 60 TYR 60 125 125 TYR TYR A . n A 1 61 THR 61 126 126 THR THR A . n A 1 62 TYR 62 127 127 TYR TYR A . n A 1 63 ILE 63 128 128 ILE ILE A . n A 1 64 PRO 64 129 129 PRO PRO A . n A 1 65 SER 65 130 130 SER SER A . n A 1 66 CYS 66 131 131 CYS CYS A . n A 1 67 PRO 67 132 132 PRO PRO A . n A 1 68 SER 68 133 133 SER SER A . n A 1 69 SER 69 134 134 SER SER A . n A 1 70 THR 70 135 135 THR THR A . n A 1 71 ALA 71 136 136 ALA ALA A . n A 1 72 GLY 72 137 137 GLY GLY A . n A 1 73 SER 73 138 138 SER SER A . n A 1 74 ILE 74 139 139 ILE ILE A . n A 1 75 HIS 75 140 140 HIS HIS A . n A 1 76 MET 76 141 141 MET MET A . n A 1 77 GLY 77 142 142 GLY GLY A . n A 1 78 PHE 78 143 143 PHE PHE A . n A 1 79 GLN 79 144 144 GLN GLN A . n A 1 80 TYR 80 145 145 TYR TYR A . n A 1 81 ASP 81 146 146 ASP ASP A . n A 1 82 MET 82 147 147 MET MET A . n A 1 83 ALA 83 148 148 ALA ALA A . n A 1 84 ASP 84 149 149 ASP ASP A . n A 1 85 THR 85 150 150 THR THR A . n A 1 86 VAL 86 151 151 VAL VAL A . n A 1 87 PRO 87 152 152 PRO PRO A . n A 1 88 VAL 88 153 153 VAL VAL A . n A 1 89 SER 89 154 154 SER SER A . n A 1 90 VAL 90 155 155 VAL VAL A . n A 1 91 ASN 91 156 156 ASN ASN A . n A 1 92 GLN 92 157 157 GLN GLN A . n A 1 93 LEU 93 158 158 LEU LEU A . n A 1 94 SER 94 159 159 SER SER A . n A 1 95 ASN 95 160 160 ASN ASN A . n A 1 96 LEU 96 161 161 LEU LEU A . n A 1 97 ARG 97 162 162 ARG ARG A . n A 1 98 GLY 98 163 163 GLY GLY A . n A 1 99 TYR 99 164 164 TYR TYR A . n A 1 100 VAL 100 165 165 VAL VAL A . n A 1 101 SER 101 166 166 SER SER A . n A 1 102 GLY 102 167 167 GLY GLY A . n A 1 103 GLN 103 168 168 GLN GLN A . n A 1 104 VAL 104 169 169 VAL VAL A . n A 1 105 TRP 105 170 170 TRP TRP A . n A 1 106 SER 106 171 171 SER SER A . n A 1 107 GLY 107 172 172 GLY GLY A . n A 1 108 SER 108 173 173 SER SER A . n A 1 109 ALA 109 174 174 ALA ALA A . n A 1 110 GLY 110 175 175 GLY GLY A . n A 1 111 LEU 111 176 176 LEU LEU A . n A 1 112 CYS 112 177 177 CYS CYS A . n A 1 113 PHE 113 178 178 PHE PHE A . n A 1 114 ILE 114 179 179 ILE ILE A . n A 1 115 ASN 115 180 180 ASN ASN A . n A 1 116 GLY 116 181 181 GLY GLY A . n A 1 117 THR 117 182 182 THR THR A . n A 1 118 ARG 118 183 183 ARG ARG A . n A 1 119 CYS 119 184 184 CYS CYS A . n A 1 120 SER 120 185 185 SER SER A . n A 1 121 ASP 121 186 186 ASP ASP A . n A 1 122 THR 122 187 187 THR THR A . n A 1 123 SER 123 188 188 SER SER A . n A 1 124 THR 124 189 189 THR THR A . n A 1 125 ALA 125 190 190 ALA ALA A . n A 1 126 ILE 126 191 191 ILE ILE A . n A 1 127 SER 127 192 192 SER SER A . n A 1 128 THR 128 193 193 THR THR A . n A 1 129 THR 129 194 194 THR THR A . n A 1 130 LEU 130 195 195 LEU LEU A . n A 1 131 ASP 131 196 196 ASP ASP A . n A 1 132 VAL 132 197 197 VAL VAL A . n A 1 133 SER 133 198 198 SER SER A . n A 1 134 LYS 134 199 199 LYS LYS A . n A 1 135 LEU 135 200 200 LEU LEU A . n A 1 136 GLY 136 201 201 GLY GLY A . n A 1 137 LYS 137 202 202 LYS LYS A . n A 1 138 LYS 138 203 203 LYS LYS A . n A 1 139 TRP 139 204 204 TRP TRP A . n A 1 140 TYR 140 205 205 TYR TYR A . n A 1 141 PRO 141 206 206 PRO PRO A . n A 1 142 TYR 142 207 207 TYR TYR A . n A 1 143 LYS 143 208 208 LYS LYS A . n A 1 144 THR 144 209 209 THR THR A . n A 1 145 SER 145 210 210 SER SER A . n A 1 146 ALA 146 211 211 ALA ALA A . n A 1 147 ASP 147 212 212 ASP ASP A . n A 1 148 TYR 148 213 213 TYR TYR A . n A 1 149 ALA 149 214 214 ALA ALA A . n A 1 150 THR 150 215 215 THR THR A . n A 1 151 ALA 151 216 216 ALA ALA A . n A 1 152 VAL 152 217 217 VAL VAL A . n A 1 153 GLY 153 218 218 GLY GLY A . n A 1 154 VAL 154 219 219 VAL VAL A . n A 1 155 ASP 155 220 220 ASP ASP A . n A 1 156 VAL 156 221 221 VAL VAL A . n A 1 157 ASN 157 222 222 ASN ASN A . n A 1 158 ILE 158 223 223 ILE ILE A . n A 1 159 ALA 159 224 224 ALA ALA A . n A 1 160 THR 160 225 225 THR THR A . n A 1 161 PRO 161 226 226 PRO PRO A . n A 1 162 LEU 162 227 227 LEU LEU A . n A 1 163 VAL 163 228 228 VAL VAL A . n A 1 164 PRO 164 229 229 PRO PRO A . n A 1 165 ALA 165 230 230 ALA ALA A . n A 1 166 ARG 166 231 231 ARG ARG A . n A 1 167 LEU 167 232 232 LEU LEU A . n A 1 168 VAL 168 233 233 VAL VAL A . n A 1 169 ILE 169 234 234 ILE ILE A . n A 1 170 ALA 170 235 235 ALA ALA A . n A 1 171 LEU 171 236 236 LEU LEU A . n A 1 172 LEU 172 237 237 LEU LEU A . n A 1 173 ASP 173 238 238 ASP ASP A . n A 1 174 GLY 174 239 239 GLY GLY A . n A 1 175 SER 175 240 240 SER SER A . n A 1 176 SER 176 241 241 SER SER A . n A 1 177 SER 177 242 242 SER SER A . n A 1 178 THR 178 243 243 THR THR A . n A 1 179 ALA 179 244 244 ALA ALA A . n A 1 180 VAL 180 245 245 VAL VAL A . n A 1 181 ALA 181 246 246 ALA ALA A . n A 1 182 ALA 182 247 247 ALA ALA A . n A 1 183 GLY 183 248 248 GLY GLY A . n A 1 184 ARG 184 249 249 ARG ARG A . n A 1 185 ILE 185 250 250 ILE ILE A . n A 1 186 TYR 186 251 251 TYR TYR A . n A 1 187 CYS 187 252 252 CYS CYS A . n A 1 188 THR 188 253 253 THR THR A . n A 1 189 TYR 189 254 254 TYR TYR A . n A 1 190 THR 190 255 255 THR THR A . n A 1 191 ILE 191 256 256 ILE ILE A . n A 1 192 GLN 192 257 257 GLN GLN A . n A 1 193 MET 193 258 258 MET MET A . n A 1 194 ILE 194 259 259 ILE ILE A . n A 1 195 GLU 195 260 260 GLU GLU A . n A 1 196 PRO 196 261 261 PRO PRO A . n A 1 197 THR 197 262 262 THR THR A . n A 1 198 ALA 198 263 263 ALA ALA A . n A 1 199 SER 199 264 264 SER SER A . n A 1 200 ALA 200 265 265 ALA ALA A . n A 1 201 LEU 201 266 266 LEU LEU A . n A 1 202 ASN 202 267 267 ASN ASN A . n A 1 203 ASN 203 268 268 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 375 375 CA CA A . C 3 HOH 1 269 269 HOH HOH A . C 3 HOH 2 270 270 HOH HOH A . C 3 HOH 3 271 271 HOH HOH A . C 3 HOH 4 272 272 HOH HOH A . C 3 HOH 5 273 273 HOH HOH A . C 3 HOH 6 274 274 HOH HOH A . C 3 HOH 7 275 275 HOH HOH A . C 3 HOH 8 276 276 HOH HOH A . C 3 HOH 9 277 277 HOH HOH A . C 3 HOH 10 278 278 HOH HOH A . C 3 HOH 11 279 279 HOH HOH A . C 3 HOH 12 280 280 HOH HOH A . C 3 HOH 13 281 281 HOH HOH A . C 3 HOH 14 282 282 HOH HOH A . C 3 HOH 15 283 283 HOH HOH A . C 3 HOH 16 284 284 HOH HOH A . C 3 HOH 17 285 285 HOH HOH A . C 3 HOH 18 286 286 HOH HOH A . C 3 HOH 19 287 287 HOH HOH A . C 3 HOH 20 288 288 HOH HOH A . C 3 HOH 21 289 289 HOH HOH A . C 3 HOH 22 290 290 HOH HOH A . C 3 HOH 23 291 291 HOH HOH A . C 3 HOH 24 292 292 HOH HOH A . C 3 HOH 25 293 293 HOH HOH A . C 3 HOH 26 294 294 HOH HOH A . C 3 HOH 27 295 295 HOH HOH A . C 3 HOH 28 296 296 HOH HOH A . C 3 HOH 29 297 297 HOH HOH A . C 3 HOH 30 298 298 HOH HOH A . C 3 HOH 31 299 299 HOH HOH A . C 3 HOH 32 300 300 HOH HOH A . C 3 HOH 33 301 301 HOH HOH A . C 3 HOH 34 302 302 HOH HOH A . C 3 HOH 35 303 303 HOH HOH A . C 3 HOH 36 304 304 HOH HOH A . C 3 HOH 37 305 305 HOH HOH A . C 3 HOH 38 306 306 HOH HOH A . C 3 HOH 39 307 307 HOH HOH A . C 3 HOH 40 308 308 HOH HOH A . C 3 HOH 41 309 309 HOH HOH A . C 3 HOH 42 310 310 HOH HOH A . C 3 HOH 43 311 311 HOH HOH A . C 3 HOH 44 312 312 HOH HOH A . C 3 HOH 45 313 313 HOH HOH A . C 3 HOH 46 314 314 HOH HOH A . C 3 HOH 47 315 315 HOH HOH A . C 3 HOH 48 316 316 HOH HOH A . C 3 HOH 49 317 317 HOH HOH A . C 3 HOH 50 318 318 HOH HOH A . C 3 HOH 51 319 319 HOH HOH A . C 3 HOH 52 320 320 HOH HOH A . C 3 HOH 53 321 321 HOH HOH A . C 3 HOH 54 322 322 HOH HOH A . C 3 HOH 55 323 323 HOH HOH A . C 3 HOH 56 324 324 HOH HOH A . C 3 HOH 57 325 325 HOH HOH A . C 3 HOH 58 326 326 HOH HOH A . C 3 HOH 59 327 327 HOH HOH A . C 3 HOH 60 328 328 HOH HOH A . C 3 HOH 61 329 329 HOH HOH A . C 3 HOH 62 330 330 HOH HOH A . C 3 HOH 63 331 331 HOH HOH A . C 3 HOH 64 332 332 HOH HOH A . C 3 HOH 65 333 333 HOH HOH A . C 3 HOH 66 334 334 HOH HOH A . C 3 HOH 67 335 335 HOH HOH A . C 3 HOH 68 336 336 HOH HOH A . C 3 HOH 69 337 337 HOH HOH A . C 3 HOH 70 338 338 HOH HOH A . C 3 HOH 71 339 339 HOH HOH A . C 3 HOH 72 340 340 HOH HOH A . C 3 HOH 73 341 341 HOH HOH A . C 3 HOH 74 342 342 HOH HOH A . C 3 HOH 75 343 343 HOH HOH A . C 3 HOH 76 344 344 HOH HOH A . C 3 HOH 77 345 345 HOH HOH A . C 3 HOH 78 346 346 HOH HOH A . C 3 HOH 79 347 347 HOH HOH A . C 3 HOH 80 348 348 HOH HOH A . C 3 HOH 81 349 349 HOH HOH A . C 3 HOH 82 350 350 HOH HOH A . C 3 HOH 83 351 351 HOH HOH A . C 3 HOH 84 352 352 HOH HOH A . C 3 HOH 85 353 353 HOH HOH A . C 3 HOH 86 354 354 HOH HOH A . C 3 HOH 87 355 355 HOH HOH A . C 3 HOH 88 356 356 HOH HOH A . C 3 HOH 89 357 357 HOH HOH A . C 3 HOH 90 358 358 HOH HOH A . C 3 HOH 91 359 359 HOH HOH A . C 3 HOH 92 360 360 HOH HOH A . C 3 HOH 93 361 361 HOH HOH A . C 3 HOH 94 362 362 HOH HOH A . C 3 HOH 95 363 363 HOH HOH A . C 3 HOH 96 364 364 HOH HOH A . C 3 HOH 97 365 365 HOH HOH A . C 3 HOH 98 366 366 HOH HOH A . C 3 HOH 99 367 367 HOH HOH A . C 3 HOH 100 368 368 HOH HOH A . C 3 HOH 101 369 369 HOH HOH A . C 3 HOH 102 370 370 HOH HOH A . C 3 HOH 103 371 371 HOH HOH A . C 3 HOH 104 372 372 HOH HOH A . C 3 HOH 105 373 373 HOH HOH A . C 3 HOH 106 374 374 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 91 ? OG ? A SER 26 OG 2 1 Y 1 A ARG 183 ? CG ? A ARG 118 CG 3 1 Y 1 A ARG 183 ? CD ? A ARG 118 CD 4 1 Y 1 A ARG 183 ? NE ? A ARG 118 NE 5 1 Y 1 A ARG 183 ? CZ ? A ARG 118 CZ 6 1 Y 1 A ARG 183 ? NH1 ? A ARG 118 NH1 7 1 Y 1 A ARG 183 ? NH2 ? A ARG 118 NH2 8 1 Y 1 A SER 185 ? OG ? A SER 120 OG # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 GLRF phasing . ? 4 # _cell.entry_id 1VAK _cell.length_a 188.239 _cell.length_b 193.954 _cell.length_c 269.054 _cell.angle_alpha 90.00 _cell.angle_beta 92.42 _cell.angle_gamma 90.00 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VAK _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VAK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG 3350, magnesium chloride, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-07-10 _diffrn_detector.details 'Osmic mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'OSMIC MIRRORS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1VAK _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 3.05 _reflns.number_obs 348643 _reflns.number_all 1386733 _reflns.percent_possible_obs 53 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value 0.082 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.05 _reflns_shell.d_res_low 3.16 _reflns_shell.percent_possible_all 95.5 _reflns_shell.Rmerge_I_obs 0.122 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 34159 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1VAK _refine.ls_number_reflns_obs 341343 _refine.ls_number_reflns_all 375575 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F .0 _refine.pdbx_data_cutoff_high_absF 274821.08 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.05 _refine.ls_percent_reflns_obs 93.4 _refine.ls_R_factor_obs 0.211 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.214 _refine.ls_R_factor_R_free_error .001 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 34232 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 11.8 _refine.aniso_B[1][1] -2.11 _refine.aniso_B[2][2] 3.46 _refine.aniso_B[3][3] -1.35 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] -3.06 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .311354 _refine.solvent_model_param_bsol 14.0119 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VAK _refine_analyze.Luzzati_coordinate_error_obs .34 _refine_analyze.Luzzati_sigma_a_obs .45 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .35 _refine_analyze.Luzzati_sigma_a_free .45 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1454 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1561 _refine_hist.d_res_high 3.05 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d .91 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.21 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.13 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.68 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.50 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details CONSTR _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_asym_id . _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.05 _refine_ls_shell.d_res_low 3.24 _refine_ls_shell.number_reflns_R_work 48762 _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.percent_reflns_obs 89.2 _refine_ls_shell.R_factor_R_free 0.288 _refine_ls_shell.R_factor_R_free_error .004 _refine_ls_shell.percent_reflns_R_free 10.0 _refine_ls_shell.number_reflns_R_free 5403 _refine_ls_shell.number_reflns_obs 48762 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000 -0.00000 -0.00000 2 generate ? 0.46213991 -0.51763990 0.72005252 0.85017876 0.48956165 -0.19371489 -0.25223554 0.70169675 0.66633243 -26.48506 -22.77588 33.52765 3 generate ? -0.40813599 0.01261981 0.91283391 0.85797824 -0.33634495 0.38825947 0.31192684 0.94165430 0.12644696 -2.79349 -62.93792 46.56692 4 generate ? -0.40813599 0.85797824 0.31192684 0.01261981 -0.33634495 0.94165430 0.91283391 0.38825947 0.12644696 38.33377 -64.98354 21.09799 5 generate ? 0.46213991 0.85017877 -0.25223554 -0.51763990 0.48956165 0.70169675 0.72005252 -0.19371489 0.66633243 40.06024 -26.08577 -7.68195 6 generate ? -0.40655063 -0.01855047 0.91343991 -0.01855047 -0.99942014 -0.02855297 0.91343991 -0.02855297 0.40597077 -2.90206 2.74770 1.94123 7 generate ? -0.43405650 0.84232304 0.31951033 -0.85105662 -0.49971083 0.16121948 0.29546165 -0.20194301 0.93376733 38.91346 25.04437 -7.98972 8 generate ? 0.43493847 0.86125338 -0.26281390 -0.85881605 0.30902879 -0.40857827 -0.27067235 0.40341520 0.87406673 41.93725 64.37132 20.09142 9 generate ? 0.99951277 0.01207946 -0.02878049 -0.03110550 0.30914806 -0.95050509 -0.00258415 0.95093720 0.30937317 1.99055 66.38004 47.37746 10 generate ? 0.47944390 -0.53166922 0.69818435 0.48820719 -0.49951785 -0.71563654 0.72923747 0.68396619 0.02007395 -25.72167 28.29455 36.16003 11 generate ? -0.99960637 0.02805353 0.00031399 0.02805353 0.99935591 0.02237765 0.00031399 0.02237765 -0.99974954 84.73651 -2.72079 136.86328 12 generate ? -0.43818668 0.53139040 -0.72499426 0.85695139 0.49042703 -0.15847915 0.27134248 -0.69072829 -0.67027434 110.58272 -25.47473 102.82604 13 generate ? 0.43214260 -0.02175484 -0.90154284 0.85295616 -0.31470227 0.41644720 -0.29277732 -0.94894110 -0.11744033 85.77789 -64.65448 88.89874 14 generate ? 0.40861599 -0.86695427 -0.28534762 0.02158911 -0.30337066 0.95262802 -0.91245103 -0.39541944 -0.10524533 44.60144 -66.11496 114.32843 15 generate ? -0.47625354 -0.83617100 0.27203055 -0.48822875 0.50876196 0.70907965 -0.73131064 0.20488856 -0.65054241 43.95783 -27.83784 143.97215 16 generate ? 0.40615700 -0.00950306 -0.91375389 -0.00950306 -0.99993578 0.00617531 -0.91375389 0.00617531 -0.40622123 87.71511 -0.01284 134.98311 17 generate ? 0.41010327 -0.85607354 -0.31456859 -0.85607354 -0.48027785 0.19097456 -0.31456859 0.19097456 -0.92982542 46.53844 23.22031 145.42365 18 generate ? -0.45894508 -0.85211835 0.25152283 -0.85211835 0.34201843 -0.39612840 0.25152283 -0.39612840 -0.88307336 44.62791 63.23515 118.23054 19 generate ? -0.99999276 -0.00310343 0.00220127 -0.00310343 0.33056755 -0.94377723 0.00220127 -0.94377723 -0.33057479 84.62382 64.73253 90.98374 20 generate ? -0.46533027 0.51766146 -0.71797935 0.51766146 -0.49880576 -0.69513986 -0.71797935 -0.69513986 -0.03586397 111.25317 25.64313 101.33740 21 generate ? 0.47615546 0.53027976 0.70148368 0.83503706 -0.02259397 -0.54972959 -0.27566118 0.84752161 -0.45356150 -25.81185 2.23584 111.17336 22 generate ? 0.49394392 0.50535639 0.70755518 0.50535639 -0.82905310 0.23934468 0.70755518 0.23934468 -0.66489082 -26.98134 -37.79671 83.96436 23 generate ? 0.47944390 0.48820719 0.72923747 -0.53166922 -0.49951785 0.68396619 0.69818435 -0.71563654 0.02007395 -27.85075 -24.27402 37.48121 24 generate ? 0.45269394 0.50253178 0.73656636 -0.84290562 0.51060527 0.16968313 -0.29082350 -0.69767045 0.65473478 -27.21858 24.11601 35.96204 25 generate ? 0.45066157 0.52853406 0.71941358 0.00176531 0.80536044 -0.59278279 -0.89269313 0.26841441 0.36201197 -25.95847 40.50000 81.50629 26 generate ? 0.43734494 -0.55883462 0.70458021 -0.84121066 0.02278694 0.54022716 -0.31795287 -0.82896599 -0.46013189 -24.37489 -1.31671 113.42162 27 generate ? -0.45071495 -0.00556955 0.89265056 -0.50564853 0.82567545 -0.25015916 -0.73564638 -0.56411792 -0.37496051 0.39287 38.55636 125.29591 28 generate ? -0.43818668 0.85695139 0.27134248 0.53139040 0.49042703 -0.69072829 -0.72499426 -0.15847915 -0.67027434 42.38541 24.75575 145.05628 29 generate ? 0.45761610 0.83675358 -0.30071738 0.83675358 -0.51965640 -0.17262868 -0.30071738 -0.17262868 -0.93795970 43.57047 -23.64656 145.39457 30 generate ? 0.99872441 -0.03825029 -0.03296174 -0.01156052 -0.80867387 0.58814363 -0.04915196 -0.58701234 -0.80808452 2.31033 -39.76023 125.84328 31 generate ? -0.46087156 0.55899362 -0.68929206 -0.83551482 -0.01145533 0.54934850 0.29918623 0.82909282 0.47232689 109.10047 -2.18235 23.43295 32 generate ? 0.43612132 0.02855335 -0.89943477 -0.53442904 0.81236377 -0.23334677 0.72400538 0.58245156 0.36954890 85.46477 38.62558 12.46168 33 generate ? 0.45269394 -0.84290562 -0.29082350 0.50253178 0.51060527 -0.69767045 0.73656636 0.16968313 0.65473478 43.10781 26.45409 -7.58939 34 generate ? -0.43405650 -0.85105662 0.29546165 0.84232304 -0.49971083 -0.20194301 0.31951033 0.16121948 0.93376733 40.56547 -21.87623 -9.01036 35 generate ? -0.99867103 0.01536476 0.04919454 0.01536476 -0.82236203 0.56875708 0.04919454 0.56875708 0.82103306 81.35118 -39.57452 10.16250 36 generate ? -0.45262885 -0.53043876 -0.71677182 0.84168842 0.01126235 -0.53984606 0.29442781 -0.84764844 0.44136649 110.63583 1.27729 25.75969 37 generate ? -0.47935030 -0.52834018 -0.70077097 0.53472119 -0.80898612 0.24416124 -0.69591418 -0.25767832 0.67030242 110.67326 -39.37115 52.06567 38 generate ? -0.49395116 -0.50225296 -0.70975645 -0.50225296 -0.50151445 0.70443255 -0.70975645 0.70443255 -0.00453439 111.90709 -26.92175 98.83952 39 generate ? -0.47625354 -0.48822875 -0.73131064 -0.83617100 0.50876196 0.20488856 0.27203055 0.70907965 -0.65054241 112.63220 21.42085 101.44136 40 generate ? -0.45071495 -0.50564853 -0.73564638 -0.00556955 0.82567545 -0.56411792 0.89265056 -0.25015916 -0.37496051 111.84652 38.84882 56.27554 41 generate ? 0.47615546 0.83503706 -0.27566118 0.53027976 -0.02259397 0.84752161 0.70148368 -0.54972959 -0.45356150 41.06962 -80.48381 69.75966 42 generate ? 0.99951277 -0.03110550 -0.00258415 0.01207946 0.30914806 0.95093720 -0.02878049 -0.95050509 0.30937317 0.19764 -65.59829 48.49454 43 generate ? 0.43612132 -0.53442904 0.72400538 0.02855335 0.81236377 0.58245156 -0.89943477 -0.23334677 0.36954890 -25.65270 -41.07665 81.27794 44 generate ? -0.43543104 0.02064246 0.89998539 0.55693508 0.79162616 0.25129931 -0.70726454 0.61065695 -0.35619511 -0.75711 -40.80695 122.80431 45 generate ? -0.41068858 0.86701906 0.28215747 0.86701906 0.27559390 0.41512162 0.28215747 0.41512162 -0.86490531 40.47955 -65.16192 115.68562 46 generate ? -0.46087156 -0.83551482 0.29918623 0.55899362 -0.01145533 0.82909282 -0.68929206 0.54934850 0.47232689 41.44710 -80.43956 65.33295 47 generate ? -0.99878950 0.03946750 0.02935742 0.03946750 0.28680624 0.95717527 0.02935742 0.95717527 -0.28801675 82.71391 -67.18610 86.91301 48 generate ? -0.43543104 0.55693508 -0.70726454 0.02064246 0.79162616 0.61065695 0.89998539 0.25129931 -0.35619511 109.25229 -42.67183 54.67844 49 generate ? 0.45066157 0.00176531 -0.89269313 0.52853406 0.80536044 0.26841441 0.71941358 -0.59278279 0.36201197 84.38710 -40.77463 13.17633 50 generate ? 0.43493847 -0.85881605 -0.27067235 0.86125338 0.30902879 0.40341520 -0.26281390 -0.40857827 0.87406673 42.48119 -64.11637 19.76118 51 generate ? -0.45262885 0.84168842 0.29442781 -0.53043876 0.01126235 -0.84764844 -0.71677182 -0.53984606 0.44136649 41.41751 80.50631 68.62072 52 generate ? 0.43214260 0.85295616 -0.29277732 -0.02175484 -0.31470227 -0.94894110 -0.90154284 0.41644720 -0.11744033 44.10669 65.87884 114.69792 53 generate ? 0.99872441 -0.01156052 -0.04915196 -0.03825029 -0.80867387 -0.58701234 -0.03296174 0.58814363 -0.80808452 3.41841 41.80687 125.15288 54 generate ? 0.46411977 -0.55712896 0.68862193 -0.55712896 -0.78800048 -0.26203541 0.68862193 -0.26203541 -0.67611928 -24.41751 41.55705 85.53721 55 generate ? -0.43286587 -0.02979212 0.90096591 -0.86131816 -0.28125203 -0.42311738 0.26600405 -0.95917137 0.09608391 -0.93278 65.47461 50.59841 56 generate ? 0.43734494 -0.84121066 -0.31795287 -0.55883462 0.02278694 -0.82896599 0.70458021 0.54022716 -0.46013189 45.61533 80.43114 70.07429 57 generate ? -0.43286587 -0.86131816 0.26600405 -0.02979212 -0.28125203 -0.95917137 0.90096591 -0.42311738 0.09608391 42.53132 66.91963 23.68215 58 generate ? -0.99941469 -0.01094552 0.03241112 -0.01094552 -0.79531605 -0.60609617 0.03241112 -0.60609617 0.79473074 82.53157 41.95567 12.67835 59 generate ? -0.47935030 0.53472119 -0.69591418 -0.52834018 -0.80898612 -0.25767832 -0.70077097 0.24416124 0.67030242 110.33709 40.03861 52.26977 60 generate ? 0.40861599 0.02158911 -0.91245103 -0.86695427 -0.30337066 -0.39541944 -0.28534762 0.95262803 -0.10524533 87.52160 63.81775 87.74241 # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? _struct_ncs_ens.point_group ? # _database_PDB_matrix.entry_id 1VAK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _struct.entry_id 1VAK _struct.title 'T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VAK _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'T=1 Capsid, SeMV, Icosahedral virus, Virus' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9EB06_9VIRU _struct_ref.pdbx_db_accession Q9EB06 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AVSSSRGGITVLTHSELSAEIGVTDSIVVSSELVMPYTVGTWLRGVAANWSKYSWLSVRYTYIPSCPSSTAGSIHMGFQY DMADTVPVSVNQLSNLRGYVSGQVWSGSAGLCFINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIAT PLVPARLVIALLDGSSSTAVAAGRIYCTYTIQMIEPTASALNN ; _struct_ref.pdbx_align_begin 66 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VAK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 203 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9EB06 _struct_ref_seq.db_align_beg 66 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 268 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 66 _struct_ref_seq.pdbx_auth_seq_align_end 268 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 'complete icosahedral assembly' 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 6 'crystal asymmetric unit, crystal frame' ? 60-meric 60 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C 2 1 A,B,C 3 '(1-5)' A,B,C 4 '(1,2,6,10,23,24)' A,B,C 5 P A,B,C 6 '(X0)(1-60)' A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.83849776 -0.00566672 -0.54487557 1.75333 0.01402903 0.99983897 0.01119063 -1.36413 0.54472441 -0.01702739 0.83844224 -80.47816 X0 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 -0.00000 0.00000000 0.00000000 1.00000000 -0.00000 2 'point symmetry operation' ? ? 0.46213991 -0.51763990 0.72005252 -26.48506 0.85017876 0.48956165 -0.19371489 -22.77588 -0.25223554 0.70169675 0.66633243 33.52765 3 'point symmetry operation' ? ? -0.40813599 0.01261981 0.91283391 -2.79349 0.85797824 -0.33634495 0.38825947 -62.93792 0.31192684 0.94165430 0.12644696 46.56692 4 'point symmetry operation' ? ? -0.40813599 0.85797824 0.31192684 38.33377 0.01261981 -0.33634495 0.94165430 -64.98354 0.91283391 0.38825947 0.12644696 21.09799 5 'point symmetry operation' ? ? 0.46213991 0.85017877 -0.25223554 40.06024 -0.51763990 0.48956165 0.70169675 -26.08577 0.72005252 -0.19371489 0.66633243 -7.68195 6 'point symmetry operation' ? ? -0.40655063 -0.01855047 0.91343991 -2.90206 -0.01855047 -0.99942014 -0.02855297 2.74770 0.91343991 -0.02855297 0.40597077 1.94123 7 'point symmetry operation' ? ? -0.43405650 0.84232304 0.31951033 38.91346 -0.85105662 -0.49971083 0.16121948 25.04437 0.29546165 -0.20194301 0.93376733 -7.98972 8 'point symmetry operation' ? ? 0.43493847 0.86125338 -0.26281390 41.93725 -0.85881605 0.30902879 -0.40857827 64.37132 -0.27067235 0.40341520 0.87406673 20.09142 9 'point symmetry operation' ? ? 0.99951277 0.01207946 -0.02878049 1.99055 -0.03110550 0.30914806 -0.95050509 66.38004 -0.00258415 0.95093720 0.30937317 47.37746 10 'point symmetry operation' ? ? 0.47944390 -0.53166922 0.69818435 -25.72167 0.48820719 -0.49951785 -0.71563654 28.29455 0.72923747 0.68396619 0.02007395 36.16003 11 'point symmetry operation' ? ? -0.99960637 0.02805353 0.00031399 84.73651 0.02805353 0.99935591 0.02237765 -2.72079 0.00031399 0.02237765 -0.99974954 136.86328 12 'point symmetry operation' ? ? -0.43818668 0.53139040 -0.72499426 110.58272 0.85695139 0.49042703 -0.15847915 -25.47473 0.27134248 -0.69072829 -0.67027434 102.82604 13 'point symmetry operation' ? ? 0.43214260 -0.02175484 -0.90154284 85.77789 0.85295616 -0.31470227 0.41644720 -64.65448 -0.29277732 -0.94894110 -0.11744033 88.89874 14 'point symmetry operation' ? ? 0.40861599 -0.86695427 -0.28534762 44.60144 0.02158911 -0.30337066 0.95262802 -66.11496 -0.91245103 -0.39541944 -0.10524533 114.32843 15 'point symmetry operation' ? ? -0.47625354 -0.83617100 0.27203055 43.95783 -0.48822875 0.50876196 0.70907965 -27.83784 -0.73131064 0.20488856 -0.65054241 143.97215 16 'point symmetry operation' ? ? 0.40615700 -0.00950306 -0.91375389 87.71511 -0.00950306 -0.99993578 0.00617531 -0.01284 -0.91375389 0.00617531 -0.40622123 134.98311 17 'point symmetry operation' ? ? 0.41010327 -0.85607354 -0.31456859 46.53844 -0.85607354 -0.48027785 0.19097456 23.22031 -0.31456859 0.19097456 -0.92982542 145.42365 18 'point symmetry operation' ? ? -0.45894508 -0.85211835 0.25152283 44.62791 -0.85211835 0.34201843 -0.39612840 63.23515 0.25152283 -0.39612840 -0.88307336 118.23054 19 'point symmetry operation' ? ? -0.99999276 -0.00310343 0.00220127 84.62382 -0.00310343 0.33056755 -0.94377723 64.73253 0.00220127 -0.94377723 -0.33057479 90.98374 20 'point symmetry operation' ? ? -0.46533027 0.51766146 -0.71797935 111.25317 0.51766146 -0.49880576 -0.69513986 25.64313 -0.71797935 -0.69513986 -0.03586397 101.33740 21 'point symmetry operation' ? ? 0.47615546 0.53027976 0.70148368 -25.81185 0.83503706 -0.02259397 -0.54972959 2.23584 -0.27566118 0.84752161 -0.45356150 111.17336 22 'point symmetry operation' ? ? 0.49394392 0.50535639 0.70755518 -26.98134 0.50535639 -0.82905310 0.23934468 -37.79671 0.70755518 0.23934468 -0.66489082 83.96436 23 'point symmetry operation' ? ? 0.47944390 0.48820719 0.72923747 -27.85075 -0.53166922 -0.49951785 0.68396619 -24.27402 0.69818435 -0.71563654 0.02007395 37.48121 24 'point symmetry operation' ? ? 0.45269394 0.50253178 0.73656636 -27.21858 -0.84290562 0.51060527 0.16968313 24.11601 -0.29082350 -0.69767045 0.65473478 35.96204 25 'point symmetry operation' ? ? 0.45066157 0.52853406 0.71941358 -25.95847 0.00176531 0.80536044 -0.59278279 40.50000 -0.89269313 0.26841441 0.36201197 81.50629 26 'point symmetry operation' ? ? 0.43734494 -0.55883462 0.70458021 -24.37489 -0.84121066 0.02278694 0.54022716 -1.31671 -0.31795287 -0.82896599 -0.46013189 113.42162 27 'point symmetry operation' ? ? -0.45071495 -0.00556955 0.89265056 0.39287 -0.50564853 0.82567545 -0.25015916 38.55636 -0.73564638 -0.56411792 -0.37496051 125.29591 28 'point symmetry operation' ? ? -0.43818668 0.85695139 0.27134248 42.38541 0.53139040 0.49042703 -0.69072829 24.75575 -0.72499426 -0.15847915 -0.67027434 145.05628 29 'point symmetry operation' ? ? 0.45761610 0.83675358 -0.30071738 43.57047 0.83675358 -0.51965640 -0.17262868 -23.64656 -0.30071738 -0.17262868 -0.93795970 145.39457 30 'point symmetry operation' ? ? 0.99872441 -0.03825029 -0.03296174 2.31033 -0.01156052 -0.80867387 0.58814363 -39.76023 -0.04915196 -0.58701234 -0.80808452 125.84328 31 'point symmetry operation' ? ? -0.46087156 0.55899362 -0.68929206 109.10047 -0.83551482 -0.01145533 0.54934850 -2.18235 0.29918623 0.82909282 0.47232689 23.43295 32 'point symmetry operation' ? ? 0.43612132 0.02855335 -0.89943477 85.46477 -0.53442904 0.81236377 -0.23334677 38.62558 0.72400538 0.58245156 0.36954890 12.46168 33 'point symmetry operation' ? ? 0.45269394 -0.84290562 -0.29082350 43.10781 0.50253178 0.51060527 -0.69767045 26.45409 0.73656636 0.16968313 0.65473478 -7.58939 34 'point symmetry operation' ? ? -0.43405650 -0.85105662 0.29546165 40.56547 0.84232304 -0.49971083 -0.20194301 -21.87623 0.31951033 0.16121948 0.93376733 -9.01036 35 'point symmetry operation' ? ? -0.99867103 0.01536476 0.04919454 81.35118 0.01536476 -0.82236203 0.56875708 -39.57452 0.04919454 0.56875708 0.82103306 10.16250 36 'point symmetry operation' ? ? -0.45262885 -0.53043876 -0.71677182 110.63583 0.84168842 0.01126235 -0.53984606 1.27729 0.29442781 -0.84764844 0.44136649 25.75969 37 'point symmetry operation' ? ? -0.47935030 -0.52834018 -0.70077097 110.67326 0.53472119 -0.80898612 0.24416124 -39.37115 -0.69591418 -0.25767832 0.67030242 52.06567 38 'point symmetry operation' ? ? -0.49395116 -0.50225296 -0.70975645 111.90709 -0.50225296 -0.50151445 0.70443255 -26.92175 -0.70975645 0.70443255 -0.00453439 98.83952 39 'point symmetry operation' ? ? -0.47625354 -0.48822875 -0.73131064 112.63220 -0.83617100 0.50876196 0.20488856 21.42085 0.27203055 0.70907965 -0.65054241 101.44136 40 'point symmetry operation' ? ? -0.45071495 -0.50564853 -0.73564638 111.84652 -0.00556955 0.82567545 -0.56411792 38.84882 0.89265056 -0.25015916 -0.37496051 56.27554 41 'point symmetry operation' ? ? 0.47615546 0.83503706 -0.27566118 41.06962 0.53027976 -0.02259397 0.84752161 -80.48381 0.70148368 -0.54972959 -0.45356150 69.75966 42 'point symmetry operation' ? ? 0.99951277 -0.03110550 -0.00258415 0.19764 0.01207946 0.30914806 0.95093720 -65.59829 -0.02878049 -0.95050509 0.30937317 48.49454 43 'point symmetry operation' ? ? 0.43612132 -0.53442904 0.72400538 -25.65270 0.02855335 0.81236377 0.58245156 -41.07665 -0.89943477 -0.23334677 0.36954890 81.27794 44 'point symmetry operation' ? ? -0.43543104 0.02064246 0.89998539 -0.75711 0.55693508 0.79162616 0.25129931 -40.80695 -0.70726454 0.61065695 -0.35619511 122.80431 45 'point symmetry operation' ? ? -0.41068858 0.86701906 0.28215747 40.47955 0.86701906 0.27559390 0.41512162 -65.16192 0.28215747 0.41512162 -0.86490531 115.68562 46 'point symmetry operation' ? ? -0.46087156 -0.83551482 0.29918623 41.44710 0.55899362 -0.01145533 0.82909282 -80.43956 -0.68929206 0.54934850 0.47232689 65.33295 47 'point symmetry operation' ? ? -0.99878950 0.03946750 0.02935742 82.71391 0.03946750 0.28680624 0.95717527 -67.18610 0.02935742 0.95717527 -0.28801675 86.91301 48 'point symmetry operation' ? ? -0.43543104 0.55693508 -0.70726454 109.25229 0.02064246 0.79162616 0.61065695 -42.67183 0.89998539 0.25129931 -0.35619511 54.67844 49 'point symmetry operation' ? ? 0.45066157 0.00176531 -0.89269313 84.38710 0.52853406 0.80536044 0.26841441 -40.77463 0.71941358 -0.59278279 0.36201197 13.17633 50 'point symmetry operation' ? ? 0.43493847 -0.85881605 -0.27067235 42.48119 0.86125338 0.30902879 0.40341520 -64.11637 -0.26281390 -0.40857827 0.87406673 19.76118 51 'point symmetry operation' ? ? -0.45262885 0.84168842 0.29442781 41.41751 -0.53043876 0.01126235 -0.84764844 80.50631 -0.71677182 -0.53984606 0.44136649 68.62072 52 'point symmetry operation' ? ? 0.43214260 0.85295616 -0.29277732 44.10669 -0.02175484 -0.31470227 -0.94894110 65.87884 -0.90154284 0.41644720 -0.11744033 114.69792 53 'point symmetry operation' ? ? 0.99872441 -0.01156052 -0.04915196 3.41841 -0.03825029 -0.80867387 -0.58701234 41.80687 -0.03296174 0.58814363 -0.80808452 125.15288 54 'point symmetry operation' ? ? 0.46411977 -0.55712896 0.68862193 -24.41751 -0.55712896 -0.78800048 -0.26203541 41.55705 0.68862193 -0.26203541 -0.67611928 85.53721 55 'point symmetry operation' ? ? -0.43286587 -0.02979212 0.90096591 -0.93278 -0.86131816 -0.28125203 -0.42311738 65.47461 0.26600405 -0.95917137 0.09608391 50.59841 56 'point symmetry operation' ? ? 0.43734494 -0.84121066 -0.31795287 45.61533 -0.55883462 0.02278694 -0.82896599 80.43114 0.70458021 0.54022716 -0.46013189 70.07429 57 'point symmetry operation' ? ? -0.43286587 -0.86131816 0.26600405 42.53132 -0.02979212 -0.28125203 -0.95917137 66.91963 0.90096591 -0.42311738 0.09608391 23.68215 58 'point symmetry operation' ? ? -0.99941469 -0.01094552 0.03241112 82.53157 -0.01094552 -0.79531605 -0.60609617 41.95567 0.03241112 -0.60609617 0.79473074 12.67835 59 'point symmetry operation' ? ? -0.47935030 0.53472119 -0.69591418 110.33709 -0.52834018 -0.80898612 -0.25767832 40.03861 -0.70077097 0.24416124 0.67030242 52.26977 60 'point symmetry operation' ? ? 0.40861599 0.02158911 -0.91245103 87.52160 -0.86695427 -0.30337066 -0.39541944 63.81775 -0.28534762 0.95262803 -0.10524533 87.74241 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 35 ? GLY A 40 ? MET A 100 GLY A 105 1 ? 6 HELX_P HELX_P2 2 GLY A 40 ? ALA A 48 ? GLY A 105 ALA A 113 1 ? 9 HELX_P HELX_P3 3 SER A 89 ? ASN A 95 ? SER A 154 ASN A 160 1 ? 7 HELX_P HELX_P4 4 GLY A 107 ? ALA A 109 ? GLY A 172 ALA A 174 5 ? 3 HELX_P HELX_P5 5 GLY A 110 ? GLY A 116 ? GLY A 175 GLY A 181 1 ? 7 HELX_P HELX_P6 6 THR A 144 ? ASP A 155 ? THR A 209 ASP A 220 1 ? 12 HELX_P HELX_P7 7 VAL A 156 ? THR A 160 ? VAL A 221 THR A 225 5 ? 5 HELX_P HELX_P8 8 ALA A 198 ? ASN A 202 ? ALA A 263 ASN A 267 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A TYR 142 O ? ? ? 1_555 B CA . CA ? ? A TYR 207 A CA 375 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc2 metalc ? ? A ASN 202 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 267 A CA 375 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc3 metalc ? ? A ASN 203 O ? ? ? 1_555 B CA . CA ? ? A ASN 268 A CA 375 1_555 ? ? ? ? ? ? ? 2.431 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A TYR 142 ? A TYR 207 ? 1_555 CA ? B CA . ? A CA 375 ? 1_555 OD1 ? A ASN 202 ? A ASN 267 ? 1_555 86.3 ? 2 O ? A TYR 142 ? A TYR 207 ? 1_555 CA ? B CA . ? A CA 375 ? 1_555 O ? A ASN 203 ? A ASN 268 ? 1_555 77.5 ? 3 OD1 ? A ASN 202 ? A ASN 267 ? 1_555 CA ? B CA . ? A CA 375 ? 1_555 O ? A ASN 203 ? A ASN 268 ? 1_555 85.5 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 10 ? VAL A 23 ? THR A 75 VAL A 88 A 2 VAL A 180 ? PRO A 196 ? VAL A 245 PRO A 261 A 3 TRP A 50 ? PRO A 64 ? TRP A 115 PRO A 129 A 4 ILE A 126 ? THR A 129 ? ILE A 191 THR A 194 B 1 THR A 10 ? VAL A 23 ? THR A 75 VAL A 88 B 2 VAL A 180 ? PRO A 196 ? VAL A 245 PRO A 261 B 3 TRP A 50 ? PRO A 64 ? TRP A 115 PRO A 129 B 4 TYR A 140 ? PRO A 141 ? TYR A 205 PRO A 206 C 1 VAL A 28 ? LEU A 33 ? VAL A 93 LEU A 98 C 2 ARG A 166 ? LEU A 172 ? ARG A 231 LEU A 237 C 3 SER A 73 ? GLN A 79 ? SER A 138 GLN A 144 C 4 ARG A 97 ? GLN A 103 ? ARG A 162 GLN A 168 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 21 ? N ILE A 86 O GLY A 183 ? O GLY A 248 A 2 3 O THR A 188 ? O THR A 253 N ARG A 59 ? N ARG A 124 A 3 4 N TYR A 62 ? N TYR A 127 O ILE A 126 ? O ILE A 191 B 1 2 N ILE A 21 ? N ILE A 86 O GLY A 183 ? O GLY A 248 B 2 3 O THR A 188 ? O THR A 253 N ARG A 59 ? N ARG A 124 B 3 4 N TYR A 53 ? N TYR A 118 O TYR A 140 ? O TYR A 205 C 1 2 N SER A 30 ? N SER A 95 O ILE A 169 ? O ILE A 234 C 2 3 O VAL A 168 ? O VAL A 233 N GLY A 77 ? N GLY A 142 C 3 4 N ILE A 74 ? N ILE A 139 O GLY A 102 ? O GLY A 167 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 375 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 375' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 TYR A 142 ? TYR A 207 . ? 1_555 ? 2 AC1 3 ASN A 202 ? ASN A 267 . ? 1_555 ? 3 AC1 3 ASN A 203 ? ASN A 268 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 99 ? ? -100.34 67.48 2 1 SER A 130 ? ? -147.03 14.82 3 1 MET A 147 ? ? -49.79 -18.38 4 1 ASP A 186 ? ? -67.12 63.70 5 1 VAL A 197 ? ? 68.03 -52.80 6 1 GLU A 260 ? ? 51.36 72.83 # _pdbx_point_symmetry.entry_id 1VAK _pdbx_point_symmetry.Schoenflies_symbol I _pdbx_point_symmetry.H-M_notation 532 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 66 ? A ALA 1 2 1 Y 1 A VAL 67 ? A VAL 2 3 1 Y 1 A SER 68 ? A SER 3 4 1 Y 1 A SER 69 ? A SER 4 5 1 Y 1 A SER 70 ? A SER 5 6 1 Y 1 A ARG 71 ? A ARG 6 7 1 Y 1 A GLY 72 ? A GLY 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 1VAK _atom_sites.fract_transf_matrix[1][1] 0.005312 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000225 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005156 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003720 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_