data_1VAQ
#
_entry.id 1VAQ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VAQ pdb_00001vaq 10.2210/pdb1vaq/pdb
NDB DD0063 ? ?
RCSB RCSB006410 ? ?
WWPDB D_1000006410 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2004-06-22
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2018-10-31
5 'Structure model' 3 0 2020-07-29
6 'Structure model' 3 1 2023-12-27
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' Advisory
4 4 'Structure model' 'Atomic model'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Derived calculations'
7 4 'Structure model' 'Source and taxonomy'
8 5 'Structure model' 'Atomic model'
9 5 'Structure model' 'Data collection'
10 5 'Structure model' 'Derived calculations'
11 5 'Structure model' 'Structure summary'
12 6 'Structure model' 'Data collection'
13 6 'Structure model' 'Database references'
14 6 'Structure model' 'Derived calculations'
15 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' ndb_struct_na_base_pair
3 4 'Structure model' ndb_struct_na_base_pair_step
4 4 'Structure model' pdbx_distant_solvent_atoms
5 4 'Structure model' pdbx_entity_src_syn
6 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
7 4 'Structure model' struct_conn
8 5 'Structure model' atom_site
9 5 'Structure model' chem_comp
10 5 'Structure model' entity
11 5 'Structure model' pdbx_branch_scheme
12 5 'Structure model' pdbx_chem_comp_identifier
13 5 'Structure model' pdbx_entity_branch
14 5 'Structure model' pdbx_entity_branch_descriptor
15 5 'Structure model' pdbx_entity_branch_link
16 5 'Structure model' pdbx_entity_branch_list
17 5 'Structure model' pdbx_entity_nonpoly
18 5 'Structure model' pdbx_nonpoly_scheme
19 5 'Structure model' pdbx_struct_assembly_gen
20 5 'Structure model' pdbx_struct_conn_angle
21 5 'Structure model' pdbx_struct_special_symmetry
22 5 'Structure model' struct_asym
23 5 'Structure model' struct_conn
24 5 'Structure model' struct_site
25 5 'Structure model' struct_site_gen
26 6 'Structure model' chem_comp
27 6 'Structure model' chem_comp_atom
28 6 'Structure model' chem_comp_bond
29 6 'Structure model' database_2
30 6 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.B_iso_or_equiv'
2 4 'Structure model' '_atom_site.Cartn_x'
3 4 'Structure model' '_atom_site.Cartn_y'
4 4 'Structure model' '_atom_site.Cartn_z'
5 4 'Structure model' '_atom_site.auth_atom_id'
6 4 'Structure model' '_atom_site.label_atom_id'
7 4 'Structure model' '_atom_site.type_symbol'
8 4 'Structure model' '_ndb_struct_na_base_pair.buckle'
9 4 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist'
10 4 'Structure model' '_ndb_struct_na_base_pair_step.inclination'
11 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id'
12 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific'
13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
14 5 'Structure model' '_atom_site.B_iso_or_equiv'
15 5 'Structure model' '_atom_site.Cartn_x'
16 5 'Structure model' '_atom_site.Cartn_y'
17 5 'Structure model' '_atom_site.Cartn_z'
18 5 'Structure model' '_atom_site.auth_asym_id'
19 5 'Structure model' '_atom_site.auth_atom_id'
20 5 'Structure model' '_atom_site.auth_comp_id'
21 5 'Structure model' '_atom_site.auth_seq_id'
22 5 'Structure model' '_atom_site.label_asym_id'
23 5 'Structure model' '_atom_site.label_atom_id'
24 5 'Structure model' '_atom_site.label_comp_id'
25 5 'Structure model' '_atom_site.label_entity_id'
26 5 'Structure model' '_atom_site.type_symbol'
27 5 'Structure model' '_chem_comp.mon_nstd_flag'
28 5 'Structure model' '_chem_comp.name'
29 5 'Structure model' '_chem_comp.type'
30 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
31 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
32 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
33 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
34 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
35 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
36 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
37 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
38 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
39 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
41 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
42 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
43 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
44 5 'Structure model' '_pdbx_struct_conn_angle.value'
45 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id'
46 5 'Structure model' '_struct_conn.pdbx_dist_value'
47 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
48 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
49 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
50 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
51 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
52 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
53 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
54 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
55 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
56 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
57 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
58 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
59 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
60 6 'Structure model' '_chem_comp.pdbx_synonyms'
61 6 'Structure model' '_database_2.pdbx_DOI'
62 6 'Structure model' '_database_2.pdbx_database_accession'
63 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VAQ
_pdbx_database_status.recvd_initial_deposition_date 2004-02-19
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Hou, M.H.' 1
'Robinson, H.' 2
'Gao, Y.G.' 3
'Wang, A.H.-J.' 4
#
_citation.id primary
_citation.title
;Crystal structure of the [Mg2+-(chromomycin A3)2]-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by a metal ion
;
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_volume 32
_citation.page_first 2214
_citation.page_last 2222
_citation.year 2004
_citation.journal_id_ASTM NARHAD
_citation.country UK
_citation.journal_id_ISSN 0305-1048
_citation.journal_id_CSD 0389
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15107489
_citation.pdbx_database_id_DOI 10.1093/nar/gkh549
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hou, M.H.' 1 ?
primary 'Robinson, H.' 2 ?
primary 'Gao, Y.G.' 3 ?
primary 'Wang, A.H.-J.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3'" 2426.617 4 ? ? ? ?
2 branched man
'2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 4
? ? ? ?
3 branched man
;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
;
432.506 4 ? ? ? ?
4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ?
5 non-polymer syn
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410
4 ? ? ? ?
6 water nat water 18.015 283 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can TTGGCCAA
_entity_poly.pdbx_strand_id A,B,C,D
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 'MAGNESIUM ION' MG
5 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH
6 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DT n
1 3 DG n
1 4 DG n
1 5 DC n
1 6 DC n
1 7 DA n
1 8 DA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details 'The synthetic DNA oligonucleotides were purified by gel electrophoresis.'
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0
2 2 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ?
3 3 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0
4 3 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 1 ARI C3 H3 2 1GL O1 HO1 sing ?
2 3 1 CDR C3 H3 2 CDR O1 HO1 sing ?
3 3 2 CDR C3 H3 3 ERI O1 HO1 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose
;
'C7 H14 O4' 162.184
ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate'
'[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194
CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158
CPH non-polymer .
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None
'C21 H24 O9' 420.410
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose
;
'C9 H16 O5' 204.220
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
_pdbx_chem_comp_identifier.comp_id 1GL
_pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL'
_pdbx_chem_comp_identifier.program PDB-CARE
_pdbx_chem_comp_identifier.program_version 1.0
_pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT THY A . n
A 1 2 DT 2 2 2 DT THY A . n
A 1 3 DG 3 3 3 DG GUA A . n
A 1 4 DG 4 4 4 DG GUA A . n
A 1 5 DC 5 5 5 DC CYT A . n
A 1 6 DC 6 6 6 DC CYT A . n
A 1 7 DA 7 7 7 DA ADE A . n
A 1 8 DA 8 8 8 DA ADE A . n
B 1 1 DT 1 9 9 DT THY B . n
B 1 2 DT 2 10 10 DT THY B . n
B 1 3 DG 3 11 11 DG GUA B . n
B 1 4 DG 4 12 12 DG GUA B . n
B 1 5 DC 5 13 13 DC CYT B . n
B 1 6 DC 6 14 14 DC CYT B . n
B 1 7 DA 7 15 15 DA ADE B . n
B 1 8 DA 8 16 16 DA ADE B . n
C 1 1 DT 1 41 41 DT THY C . n
C 1 2 DT 2 42 42 DT THY C . n
C 1 3 DG 3 43 43 DG GUA C . n
C 1 4 DG 4 44 44 DG GUA C . n
C 1 5 DC 5 45 45 DC CYT C . n
C 1 6 DC 6 46 46 DC CYT C . n
C 1 7 DA 7 47 47 DA ADE C . n
C 1 8 DA 8 48 48 DA ADE C . n
D 1 1 DT 1 49 49 DT THY D . n
D 1 2 DT 2 50 50 DT THY D . n
D 1 3 DG 3 51 51 DG GUA D . n
D 1 4 DG 4 52 52 DG GUA D . n
D 1 5 DC 5 53 53 DC CYT D . n
D 1 6 DC 6 54 54 DC CYT D . n
D 1 7 DA 7 55 55 DA ADE D . n
D 1 8 DA 8 56 56 DA ADE D . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
E 2 ARI 1 E ARI 1 ? ARI 32 n
E 2 1GL 2 E 1GL 2 ? BRI 31 n
F 2 ARI 1 F ARI 1 ? ARI 22 n
F 2 1GL 2 F 1GL 2 ? BRI 21 n
G 3 CDR 1 G CDR 1 ? CDR 24 n
G 3 CDR 2 G CDR 2 ? CDR 25 n
G 3 ERI 3 G ERI 3 ? ERI 26 n
H 3 CDR 1 H CDR 1 ? CDR 34 n
H 3 CDR 2 H CDR 2 ? CDR 35 n
H 3 ERI 3 H ERI 3 ? ERI 36 n
I 2 ARI 1 I ARI 1 ? ARI 72 n
I 2 1GL 2 I 1GL 2 ? BRI 71 n
J 3 CDR 1 J CDR 1 ? CDR 74 n
J 3 CDR 2 J CDR 2 ? CDR 75 n
J 3 ERI 3 J ERI 3 ? ERI 76 n
K 2 ARI 1 K ARI 1 ? ARI 62 n
K 2 1GL 2 K 1GL 2 ? BRI 61 n
L 3 CDR 1 L CDR 1 ? CDR 64 n
L 3 CDR 2 L CDR 2 ? CDR 65 n
L 3 ERI 3 L ERI 3 ? ERI 66 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 MG 1 81 81 MG MGW A .
N 5 CPH 1 33 33 CPH CPH A .
O 5 CPH 1 23 23 CPH CPH B .
P 5 CPH 1 73 73 CPH CPH C .
Q 4 MG 1 82 82 MG MGW D .
R 5 CPH 1 63 63 CPH CPH D .
S 6 HOH 1 204 204 HOH TIP A .
S 6 HOH 2 238 238 HOH TIP A .
S 6 HOH 3 239 239 HOH TIP A .
S 6 HOH 4 240 240 HOH TIP A .
S 6 HOH 5 242 242 HOH TIP A .
S 6 HOH 6 243 243 HOH TIP A .
S 6 HOH 7 260 260 HOH TIP A .
S 6 HOH 8 261 261 HOH TIP A .
S 6 HOH 9 264 264 HOH TIP A .
S 6 HOH 10 268 268 HOH TIP A .
S 6 HOH 11 270 270 HOH TIP A .
S 6 HOH 12 280 280 HOH TIP A .
S 6 HOH 13 286 286 HOH TIP A .
S 6 HOH 14 304 304 HOH TIP A .
S 6 HOH 15 317 317 HOH TIP A .
S 6 HOH 16 318 318 HOH TIP A .
S 6 HOH 17 322 322 HOH TIP A .
S 6 HOH 18 343 343 HOH TIP A .
S 6 HOH 19 375 375 HOH TIP A .
S 6 HOH 20 379 379 HOH TIP A .
S 6 HOH 21 390 390 HOH TIP A .
S 6 HOH 22 397 397 HOH TIP A .
S 6 HOH 23 405 405 HOH TIP A .
S 6 HOH 24 407 407 HOH TIP A .
S 6 HOH 25 409 409 HOH TIP A .
S 6 HOH 26 416 416 HOH TIP A .
S 6 HOH 27 417 417 HOH TIP A .
S 6 HOH 28 418 418 HOH TIP A .
S 6 HOH 29 423 423 HOH TIP A .
S 6 HOH 30 439 439 HOH TIP A .
S 6 HOH 31 440 440 HOH TIP A .
S 6 HOH 32 441 441 HOH TIP A .
S 6 HOH 33 481 81 HOH MGW A .
T 6 HOH 1 205 205 HOH TIP B .
T 6 HOH 2 206 206 HOH TIP B .
T 6 HOH 3 207 207 HOH TIP B .
T 6 HOH 4 208 208 HOH TIP B .
T 6 HOH 5 209 209 HOH TIP B .
T 6 HOH 6 210 210 HOH TIP B .
T 6 HOH 7 213 213 HOH TIP B .
T 6 HOH 8 214 214 HOH TIP B .
T 6 HOH 9 215 215 HOH TIP B .
T 6 HOH 10 217 217 HOH TIP B .
T 6 HOH 11 218 218 HOH TIP B .
T 6 HOH 12 233 233 HOH TIP B .
T 6 HOH 13 234 234 HOH TIP B .
T 6 HOH 14 235 235 HOH TIP B .
T 6 HOH 15 236 236 HOH TIP B .
T 6 HOH 16 237 237 HOH TIP B .
T 6 HOH 17 248 248 HOH TIP B .
T 6 HOH 18 249 249 HOH TIP B .
T 6 HOH 19 251 251 HOH TIP B .
T 6 HOH 20 252 252 HOH TIP B .
T 6 HOH 21 253 253 HOH TIP B .
T 6 HOH 22 263 263 HOH TIP B .
T 6 HOH 23 265 265 HOH TIP B .
T 6 HOH 24 284 284 HOH TIP B .
T 6 HOH 25 287 287 HOH TIP B .
T 6 HOH 26 288 288 HOH TIP B .
T 6 HOH 27 312 312 HOH TIP B .
T 6 HOH 28 313 313 HOH TIP B .
T 6 HOH 29 314 314 HOH TIP B .
T 6 HOH 30 316 316 HOH TIP B .
T 6 HOH 31 319 319 HOH TIP B .
T 6 HOH 32 344 344 HOH TIP B .
T 6 HOH 33 345 345 HOH TIP B .
T 6 HOH 34 346 346 HOH TIP B .
T 6 HOH 35 347 347 HOH TIP B .
T 6 HOH 36 348 348 HOH TIP B .
T 6 HOH 37 349 349 HOH TIP B .
T 6 HOH 38 350 350 HOH TIP B .
T 6 HOH 39 351 351 HOH TIP B .
T 6 HOH 40 359 359 HOH TIP B .
T 6 HOH 41 360 360 HOH TIP B .
T 6 HOH 42 361 361 HOH TIP B .
T 6 HOH 43 362 362 HOH TIP B .
T 6 HOH 44 363 363 HOH TIP B .
T 6 HOH 45 364 364 HOH TIP B .
T 6 HOH 46 365 365 HOH TIP B .
T 6 HOH 47 366 366 HOH TIP B .
T 6 HOH 48 367 367 HOH TIP B .
T 6 HOH 49 368 368 HOH TIP B .
T 6 HOH 50 369 369 HOH TIP B .
T 6 HOH 51 370 370 HOH TIP B .
T 6 HOH 52 371 371 HOH TIP B .
T 6 HOH 53 372 372 HOH TIP B .
T 6 HOH 54 374 374 HOH TIP B .
T 6 HOH 55 376 376 HOH TIP B .
T 6 HOH 56 377 377 HOH TIP B .
T 6 HOH 57 378 378 HOH TIP B .
T 6 HOH 58 380 380 HOH TIP B .
T 6 HOH 59 381 381 HOH TIP B .
T 6 HOH 60 382 382 HOH TIP B .
T 6 HOH 61 383 383 HOH TIP B .
T 6 HOH 62 384 384 HOH TIP B .
T 6 HOH 63 385 385 HOH TIP B .
T 6 HOH 64 386 386 HOH TIP B .
T 6 HOH 65 387 387 HOH TIP B .
T 6 HOH 66 388 388 HOH TIP B .
T 6 HOH 67 389 389 HOH TIP B .
T 6 HOH 68 391 391 HOH TIP B .
T 6 HOH 69 392 392 HOH TIP B .
T 6 HOH 70 394 394 HOH TIP B .
T 6 HOH 71 395 395 HOH TIP B .
T 6 HOH 72 396 396 HOH TIP B .
T 6 HOH 73 404 404 HOH TIP B .
T 6 HOH 74 408 408 HOH TIP B .
T 6 HOH 75 410 410 HOH TIP B .
T 6 HOH 76 411 411 HOH TIP B .
T 6 HOH 77 412 412 HOH TIP B .
T 6 HOH 78 413 413 HOH TIP B .
T 6 HOH 79 415 415 HOH TIP B .
T 6 HOH 80 421 421 HOH TIP B .
T 6 HOH 81 422 422 HOH TIP B .
T 6 HOH 82 424 424 HOH TIP B .
T 6 HOH 83 431 431 HOH TIP B .
T 6 HOH 84 432 432 HOH TIP B .
T 6 HOH 85 433 433 HOH TIP B .
T 6 HOH 86 435 435 HOH TIP B .
T 6 HOH 87 436 436 HOH TIP B .
T 6 HOH 88 437 437 HOH TIP B .
T 6 HOH 89 438 438 HOH TIP B .
T 6 HOH 90 442 442 HOH TIP B .
T 6 HOH 91 453 453 HOH TIP B .
T 6 HOH 92 456 456 HOH TIP B .
T 6 HOH 93 457 457 HOH TIP B .
T 6 HOH 94 458 458 HOH TIP B .
T 6 HOH 95 459 459 HOH TIP B .
T 6 HOH 96 460 460 HOH TIP B .
T 6 HOH 97 463 463 HOH TIP B .
T 6 HOH 98 467 467 HOH TIP B .
T 6 HOH 99 476 476 HOH TIP B .
T 6 HOH 100 480 81 HOH MGW B .
U 6 HOH 1 203 203 HOH TIP C .
U 6 HOH 2 212 212 HOH TIP C .
U 6 HOH 3 216 216 HOH TIP C .
U 6 HOH 4 219 219 HOH TIP C .
U 6 HOH 5 222 222 HOH TIP C .
U 6 HOH 6 223 223 HOH TIP C .
U 6 HOH 7 224 224 HOH TIP C .
U 6 HOH 8 225 225 HOH TIP C .
U 6 HOH 9 226 226 HOH TIP C .
U 6 HOH 10 227 227 HOH TIP C .
U 6 HOH 11 228 228 HOH TIP C .
U 6 HOH 12 229 229 HOH TIP C .
U 6 HOH 13 230 230 HOH TIP C .
U 6 HOH 14 231 231 HOH TIP C .
U 6 HOH 15 232 232 HOH TIP C .
U 6 HOH 16 241 241 HOH TIP C .
U 6 HOH 17 246 246 HOH TIP C .
U 6 HOH 18 247 247 HOH TIP C .
U 6 HOH 19 250 250 HOH TIP C .
U 6 HOH 20 254 254 HOH TIP C .
U 6 HOH 21 255 255 HOH TIP C .
U 6 HOH 22 259 259 HOH TIP C .
U 6 HOH 23 262 262 HOH TIP C .
U 6 HOH 24 267 267 HOH TIP C .
U 6 HOH 25 269 269 HOH TIP C .
U 6 HOH 26 271 271 HOH TIP C .
U 6 HOH 27 272 272 HOH TIP C .
U 6 HOH 28 273 273 HOH TIP C .
U 6 HOH 29 274 274 HOH TIP C .
U 6 HOH 30 285 285 HOH TIP C .
U 6 HOH 31 289 289 HOH TIP C .
U 6 HOH 32 290 290 HOH TIP C .
U 6 HOH 33 291 291 HOH TIP C .
U 6 HOH 34 292 292 HOH TIP C .
U 6 HOH 35 293 293 HOH TIP C .
U 6 HOH 36 294 294 HOH TIP C .
U 6 HOH 37 295 295 HOH TIP C .
U 6 HOH 38 296 296 HOH TIP C .
U 6 HOH 39 298 298 HOH TIP C .
U 6 HOH 40 299 299 HOH TIP C .
U 6 HOH 41 302 302 HOH TIP C .
U 6 HOH 42 303 303 HOH TIP C .
U 6 HOH 43 305 305 HOH TIP C .
U 6 HOH 44 306 306 HOH TIP C .
U 6 HOH 45 325 325 HOH TIP C .
U 6 HOH 46 326 326 HOH TIP C .
U 6 HOH 47 327 327 HOH TIP C .
U 6 HOH 48 328 328 HOH TIP C .
U 6 HOH 49 329 329 HOH TIP C .
U 6 HOH 50 331 331 HOH TIP C .
U 6 HOH 51 352 352 HOH TIP C .
U 6 HOH 52 353 353 HOH TIP C .
U 6 HOH 53 357 357 HOH TIP C .
U 6 HOH 54 358 358 HOH TIP C .
U 6 HOH 55 373 373 HOH TIP C .
U 6 HOH 56 402 402 HOH TIP C .
U 6 HOH 57 403 403 HOH TIP C .
U 6 HOH 58 414 414 HOH TIP C .
U 6 HOH 59 420 420 HOH TIP C .
U 6 HOH 60 426 426 HOH TIP C .
U 6 HOH 61 427 427 HOH TIP C .
U 6 HOH 62 428 428 HOH TIP C .
U 6 HOH 63 429 429 HOH TIP C .
U 6 HOH 64 430 430 HOH TIP C .
U 6 HOH 65 434 434 HOH TIP C .
U 6 HOH 66 443 443 HOH TIP C .
U 6 HOH 67 444 444 HOH TIP C .
U 6 HOH 68 445 445 HOH TIP C .
U 6 HOH 69 446 446 HOH TIP C .
U 6 HOH 70 450 450 HOH TIP C .
U 6 HOH 71 454 454 HOH TIP C .
U 6 HOH 72 455 455 HOH TIP C .
U 6 HOH 73 461 461 HOH TIP C .
U 6 HOH 74 462 462 HOH TIP C .
U 6 HOH 75 470 470 HOH TIP C .
U 6 HOH 76 474 474 HOH TIP C .
U 6 HOH 77 475 475 HOH TIP C .
U 6 HOH 78 479 479 HOH TIP C .
V 6 HOH 1 201 201 HOH TIP D .
V 6 HOH 2 202 202 HOH TIP D .
V 6 HOH 3 211 211 HOH TIP D .
V 6 HOH 4 220 220 HOH TIP D .
V 6 HOH 5 221 221 HOH TIP D .
V 6 HOH 6 244 244 HOH TIP D .
V 6 HOH 7 245 245 HOH TIP D .
V 6 HOH 8 256 256 HOH TIP D .
V 6 HOH 9 257 257 HOH TIP D .
V 6 HOH 10 258 258 HOH TIP D .
V 6 HOH 11 266 266 HOH TIP D .
V 6 HOH 12 275 275 HOH TIP D .
V 6 HOH 13 276 276 HOH TIP D .
V 6 HOH 14 277 277 HOH TIP D .
V 6 HOH 15 278 278 HOH TIP D .
V 6 HOH 16 279 279 HOH TIP D .
V 6 HOH 17 281 281 HOH TIP D .
V 6 HOH 18 282 282 HOH TIP D .
V 6 HOH 19 283 283 HOH TIP D .
V 6 HOH 20 297 297 HOH TIP D .
V 6 HOH 21 300 300 HOH TIP D .
V 6 HOH 22 301 301 HOH TIP D .
V 6 HOH 23 307 307 HOH TIP D .
V 6 HOH 24 308 308 HOH TIP D .
V 6 HOH 25 309 309 HOH TIP D .
V 6 HOH 26 310 310 HOH TIP D .
V 6 HOH 27 311 311 HOH TIP D .
V 6 HOH 28 315 315 HOH TIP D .
V 6 HOH 29 320 320 HOH TIP D .
V 6 HOH 30 321 321 HOH TIP D .
V 6 HOH 31 323 323 HOH TIP D .
V 6 HOH 32 324 324 HOH TIP D .
V 6 HOH 33 330 330 HOH TIP D .
V 6 HOH 34 332 332 HOH TIP D .
V 6 HOH 35 333 333 HOH TIP D .
V 6 HOH 36 334 334 HOH TIP D .
V 6 HOH 37 335 335 HOH TIP D .
V 6 HOH 38 336 336 HOH TIP D .
V 6 HOH 39 337 337 HOH TIP D .
V 6 HOH 40 338 338 HOH TIP D .
V 6 HOH 41 339 339 HOH TIP D .
V 6 HOH 42 340 340 HOH TIP D .
V 6 HOH 43 341 341 HOH TIP D .
V 6 HOH 44 342 342 HOH TIP D .
V 6 HOH 45 354 354 HOH TIP D .
V 6 HOH 46 355 355 HOH TIP D .
V 6 HOH 47 356 356 HOH TIP D .
V 6 HOH 48 393 393 HOH TIP D .
V 6 HOH 49 398 398 HOH TIP D .
V 6 HOH 50 399 399 HOH TIP D .
V 6 HOH 51 400 400 HOH TIP D .
V 6 HOH 52 401 401 HOH TIP D .
V 6 HOH 53 406 406 HOH TIP D .
V 6 HOH 54 419 419 HOH TIP D .
V 6 HOH 55 425 425 HOH TIP D .
V 6 HOH 56 447 447 HOH TIP D .
V 6 HOH 57 448 448 HOH TIP D .
V 6 HOH 58 449 449 HOH TIP D .
V 6 HOH 59 451 451 HOH TIP D .
V 6 HOH 60 452 452 HOH TIP D .
V 6 HOH 61 464 464 HOH TIP D .
V 6 HOH 62 465 465 HOH TIP D .
V 6 HOH 63 466 466 HOH TIP D .
V 6 HOH 64 468 468 HOH TIP D .
V 6 HOH 65 469 469 HOH TIP D .
V 6 HOH 66 471 471 HOH TIP D .
V 6 HOH 67 472 472 HOH TIP D .
V 6 HOH 68 473 473 HOH TIP D .
V 6 HOH 69 477 477 HOH TIP D .
V 6 HOH 70 478 478 HOH TIP D .
V 6 HOH 71 482 82 HOH MGW D .
V 6 HOH 72 483 82 HOH MGW D .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
DENZO 'data reduction' . ? 1
SCALEPACK 'data scaling' . ? 2
SOLVE phasing . ? 3
CNS refinement . ? 4
#
_cell.entry_id 1VAQ
_cell.length_a 42.23
_cell.length_b 42.23
_cell.length_c 246.11
_cell.angle_alpha 90
_cell.angle_beta 90
_cell.angle_gamma 120
_cell.pdbx_unique_axis ?
_cell.Z_PDB 48
#
_symmetry.entry_id 1VAQ
_symmetry.space_group_name_H-M 'P 65 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 179
_symmetry.cell_setting ?
#
_exptl.entry_id 1VAQ
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.79
_exptl_crystal.density_percent_sol 30.91
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5
_exptl_crystal_grow.pdbx_details 'sodium-cacodylate, MgCl2, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 298K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 sodium-cacodylate ? ? ?
1 2 1 MgCl2 ? ? ?
1 3 2 sodium-cacodylate ? ? ?
1 4 2 MgCl2 ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 110
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type RIGAKU
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5432
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 19-ID'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 19-ID
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5432
#
_reflns.entry_id 1VAQ
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.d_resolution_high 2.0
_reflns.d_resolution_low 50
_reflns.number_all 7815
_reflns.number_obs ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs 0.0055
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 6
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1VAQ
_refine.ls_d_res_high 2.0
_refine.ls_d_res_low 50
_refine.pdbx_ls_sigma_F 10
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all 7815
_refine.ls_number_reflns_obs 7815
_refine.ls_number_reflns_R_free 726
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.235
_refine.ls_R_factor_R_work 0.235
_refine.ls_R_factor_R_free 0.278
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct MAD
_refine.pdbx_starting_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model Isotropic
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.details ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 644
_refine_hist.pdbx_number_atoms_ligand 338
_refine_hist.number_atoms_solvent 279
_refine_hist.number_atoms_total 1261
_refine_hist.d_res_high 2.0
_refine_hist.d_res_low 50
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_angle_deg 2.2 ? ? ? 'X-RAY DIFFRACTION' ?
c_bond_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.d_res_high 2.0
_refine_ls_shell.d_res_low 2.07
_refine_ls_shell.number_reflns_R_work ?
_refine_ls_shell.R_factor_R_work 0.235
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.278
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 735
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 1VAQ
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VAQ
_struct.title
;Crystal structure of the Mg2+-(chromomycin A3)2-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VAQ
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Chromomycin A3, MAD, DNA duplex, GGCC site, DNA kink, CD spectra, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 1 ?
D N N 1 ?
E N N 2 ?
F N N 2 ?
G N N 3 ?
H N N 3 ?
I N N 2 ?
J N N 3 ?
K N N 2 ?
L N N 3 ?
M N N 4 ?
N N N 5 ?
O N N 5 ?
P N N 5 ?
Q N N 4 ?
R N N 5 ?
S N N 6 ?
T N N 6 ?
U N N 6 ?
V N N 6 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1VAQ
_struct_ref.pdbx_db_accession 1VAQ
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1VAQ A 1 ? 8 ? 1VAQ 1 ? 8 ? 1 8
2 1 1VAQ B 1 ? 8 ? 1VAQ 9 ? 16 ? 9 16
3 1 1VAQ C 1 ? 8 ? 1VAQ 41 ? 48 ? 41 48
4 1 1VAQ D 1 ? 8 ? 1VAQ 49 ? 56 ? 49 56
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_defined_assembly ? dimeric 2
2 author_defined_assembly ? dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,E,F,G,H,M,N,O,S,T
2 1 C,D,I,J,K,L,P,Q,R,U,V
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? N CPH . C6 ? ? ? 1_555 E ARI . O1 ? ? A CPH 33 E ARI 1 1_555 ? ? ? ? ? ? ? 1.381 ? ?
covale2 covale one ? N CPH . C2 ? ? ? 1_555 H CDR . O1 ? ? A CPH 33 H CDR 1 1_555 ? ? ? ? ? ? ? 1.389 ? ?
covale3 covale one ? O CPH . C6 ? ? ? 1_555 F ARI . O1 ? ? B CPH 23 F ARI 1 1_555 ? ? ? ? ? ? ? 1.380 ? ?
covale4 covale one ? O CPH . C2 ? ? ? 1_555 G CDR . O1 ? ? B CPH 23 G CDR 1 1_555 ? ? ? ? ? ? ? 1.377 ? ?
covale5 covale one ? P CPH . C6 ? ? ? 1_555 I ARI . O1 ? ? C CPH 73 I ARI 1 1_555 ? ? ? ? ? ? ? 1.371 ? ?
covale6 covale one ? P CPH . C2 ? ? ? 1_555 J CDR . O1 ? ? C CPH 73 J CDR 1 1_555 ? ? ? ? ? ? ? 1.394 ? ?
covale7 covale one ? R CPH . C6 ? ? ? 1_555 K ARI . O1 ? ? D CPH 63 K ARI 1 1_555 ? ? ? ? ? ? ? 1.382 ? ?
covale8 covale one ? R CPH . C2 ? ? ? 1_555 L CDR . O1 ? ? D CPH 63 L CDR 1 1_555 ? ? ? ? ? ? ? 1.379 ? ?
covale9 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.384 ? ?
covale10 covale one ? F ARI . C3 ? ? ? 1_555 F 1GL . O1 ? ? F ARI 1 F 1GL 2 1_555 ? ? ? ? ? ? ? 1.394 ? ?
covale11 covale one ? G CDR . C3 ? ? ? 1_555 G CDR . O1 ? ? G CDR 1 G CDR 2 1_555 ? ? ? ? ? ? ? 1.388 ? ?
covale12 covale one ? G CDR . C3 ? ? ? 1_555 G ERI . O1 ? ? G CDR 2 G ERI 3 1_555 ? ? ? ? ? ? ? 1.387 ? ?
covale13 covale one ? H CDR . C3 ? ? ? 1_555 H CDR . O1 ? ? H CDR 1 H CDR 2 1_555 ? ? ? ? ? ? ? 1.393 ? ?
covale14 covale one ? H CDR . C3 ? ? ? 1_555 H ERI . O1 ? ? H CDR 2 H ERI 3 1_555 ? ? ? ? ? ? ? 1.391 ? ?
covale15 covale one ? I ARI . C3 ? ? ? 1_555 I 1GL . O1 ? ? I ARI 1 I 1GL 2 1_555 ? ? ? ? ? ? ? 1.390 ? ?
covale16 covale one ? J CDR . C3 ? ? ? 1_555 J CDR . O1 ? ? J CDR 1 J CDR 2 1_555 ? ? ? ? ? ? ? 1.391 ? ?
covale17 covale one ? J CDR . C3 ? ? ? 1_555 J ERI . O1 ? ? J CDR 2 J ERI 3 1_555 ? ? ? ? ? ? ? 1.383 ? ?
covale18 covale one ? K ARI . C3 ? ? ? 1_555 K 1GL . O1 ? ? K ARI 1 K 1GL 2 1_555 ? ? ? ? ? ? ? 1.401 ? ?
covale19 covale one ? L CDR . C3 ? ? ? 1_555 L CDR . O1 ? ? L CDR 1 L CDR 2 1_555 ? ? ? ? ? ? ? 1.401 ? ?
covale20 covale one ? L CDR . C3 ? ? ? 1_555 L ERI . O1 ? ? L CDR 2 L ERI 3 1_555 ? ? ? ? ? ? ? 1.368 ? ?
metalc1 metalc ? ? N CPH . O1 ? ? ? 1_555 M MG . MG ? ? A CPH 33 A MG 81 1_555 ? ? ? ? ? ? ? 2.035 ? ?
metalc2 metalc ? ? N CPH . O9 ? ? ? 1_555 M MG . MG ? ? A CPH 33 A MG 81 1_555 ? ? ? ? ? ? ? 1.865 ? ?
metalc3 metalc ? ? M MG . MG ? ? ? 1_555 S HOH . O ? ? A MG 81 A HOH 481 1_555 ? ? ? ? ? ? ? 2.056 ? ?
metalc4 metalc ? ? M MG . MG ? ? ? 1_555 O CPH . O1 ? ? A MG 81 B CPH 23 1_555 ? ? ? ? ? ? ? 1.999 ? ?
metalc5 metalc ? ? M MG . MG ? ? ? 1_555 O CPH . O9 ? ? A MG 81 B CPH 23 1_555 ? ? ? ? ? ? ? 1.807 ? ?
metalc6 metalc ? ? M MG . MG ? ? ? 1_555 T HOH . O ? ? A MG 81 B HOH 480 1_555 ? ? ? ? ? ? ? 2.073 ? ?
metalc7 metalc ? ? P CPH . O1 ? ? ? 1_555 Q MG . MG ? ? C CPH 73 D MG 82 1_555 ? ? ? ? ? ? ? 2.065 ? ?
metalc8 metalc ? ? P CPH . O9 ? ? ? 1_555 Q MG . MG ? ? C CPH 73 D MG 82 1_555 ? ? ? ? ? ? ? 1.877 ? ?
metalc9 metalc ? ? R CPH . O9 ? ? ? 1_555 Q MG . MG ? ? D CPH 63 D MG 82 1_555 ? ? ? ? ? ? ? 1.837 ? ?
metalc10 metalc ? ? R CPH . O1 ? ? ? 1_555 Q MG . MG ? ? D CPH 63 D MG 82 1_555 ? ? ? ? ? ? ? 2.110 ? ?
metalc11 metalc ? ? Q MG . MG ? ? ? 1_555 V HOH . O ? ? D MG 82 D HOH 482 1_555 ? ? ? ? ? ? ? 2.069 ? ?
metalc12 metalc ? ? Q MG . MG ? ? ? 1_555 V HOH . O ? ? D MG 82 D HOH 483 1_555 ? ? ? ? ? ? ? 2.008 ? ?
hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 41 D DA 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? C DT 1 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 41 D DA 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 42 D DA 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 42 D DA 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 43 D DC 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 43 D DC 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 43 D DC 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 44 D DC 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 44 D DC 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 44 D DC 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 45 D DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 45 D DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 45 D DG 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog34 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 46 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog35 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 46 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog36 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 46 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog37 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 47 D DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog38 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 47 D DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog39 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 1 N3 ? ? C DA 48 D DT 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog40 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 1 O4 ? ? C DA 48 D DT 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? N CPH . ? A CPH 33 ? 1_555 82.0 ?
2 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? S HOH . ? A HOH 481 ? 1_555 99.5 ?
3 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? S HOH . ? A HOH 481 ? 1_555 105.4 ?
4 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O1 ? O CPH . ? B CPH 23 ? 1_555 86.3 ?
5 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O1 ? O CPH . ? B CPH 23 ? 1_555 91.7 ?
6 O ? S HOH . ? A HOH 481 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O1 ? O CPH . ? B CPH 23 ? 1_555 162.6 ?
7 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 98.6 ?
8 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 172.9 ?
9 O ? S HOH . ? A HOH 481 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 81.6 ?
10 O1 ? O CPH . ? B CPH 23 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O9 ? O CPH . ? B CPH 23 ? 1_555 81.3 ?
11 O1 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 167.5 ?
12 O9 ? N CPH . ? A CPH 33 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 87.9 ?
13 O ? S HOH . ? A HOH 481 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 90.2 ?
14 O1 ? O CPH . ? B CPH 23 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 86.7 ?
15 O9 ? O CPH . ? B CPH 23 ? 1_555 MG ? M MG . ? A MG 81 ? 1_555 O ? T HOH . ? B HOH 480 ? 1_555 90.5 ?
16 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O9 ? P CPH . ? C CPH 73 ? 1_555 80.9 ?
17 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O9 ? R CPH . ? D CPH 63 ? 1_555 93.1 ?
18 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O9 ? R CPH . ? D CPH 63 ? 1_555 169.2 ?
19 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O1 ? R CPH . ? D CPH 63 ? 1_555 91.1 ?
20 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O1 ? R CPH . ? D CPH 63 ? 1_555 105.6 ?
21 O9 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O1 ? R CPH . ? D CPH 63 ? 1_555 83.3 ?
22 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 82.5 ?
23 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 84.8 ?
24 O9 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 85.5 ?
25 O1 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 482 ? 1_555 166.8 ?
26 O1 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 173.1 ?
27 O9 ? P CPH . ? C CPH 73 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 93.5 ?
28 O9 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 91.8 ?
29 O1 ? R CPH . ? D CPH 63 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 94.2 ?
30 O ? V HOH . ? D HOH 482 ? 1_555 MG ? Q MG . ? D MG 82 ? 1_555 O ? V HOH . ? D HOH 483 ? 1_555 93.0 ?
#
_struct_site.id 1
_struct_site.pdbx_evidence_code ?
_struct_site.pdbx_auth_asym_id ?
_struct_site.pdbx_auth_comp_id ?
_struct_site.pdbx_auth_seq_id ?
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues ?
_struct_site.details ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 B
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 422
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 C
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 250
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.17
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.31 108.30 2.01 0.30 N
2 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.31 108.30 2.01 0.30 N
3 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? N1 B DT 10 ? ? 110.38 108.30 2.08 0.30 N
4 1 "O4'" C DC 45 ? ? "C1'" C DC 45 ? ? N1 C DC 45 ? ? 112.33 108.30 4.03 0.30 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DG A 3 ? ? 0.137 'SIDE CHAIN'
2 1 DG A 4 ? ? 0.106 'SIDE CHAIN'
3 1 DT B 10 ? ? 0.072 'SIDE CHAIN'
4 1 DG B 11 ? ? 0.113 'SIDE CHAIN'
5 1 DG B 12 ? ? 0.096 'SIDE CHAIN'
6 1 DG C 44 ? ? 0.057 'SIDE CHAIN'
7 1 DC C 45 ? ? 0.090 'SIDE CHAIN'
8 1 DG D 51 ? ? 0.099 'SIDE CHAIN'
9 1 DC D 53 ? ? 0.067 'SIDE CHAIN'
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text 'outside binder'
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 268 ? S HOH .
2 1 A HOH 280 ? S HOH .
3 1 A HOH 409 ? S HOH .
4 1 B HOH 345 ? T HOH .
#
loop_
_pdbx_distant_solvent_atoms.id
_pdbx_distant_solvent_atoms.PDB_model_num
_pdbx_distant_solvent_atoms.auth_atom_id
_pdbx_distant_solvent_atoms.label_alt_id
_pdbx_distant_solvent_atoms.auth_asym_id
_pdbx_distant_solvent_atoms.auth_comp_id
_pdbx_distant_solvent_atoms.auth_seq_id
_pdbx_distant_solvent_atoms.PDB_ins_code
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance
_pdbx_distant_solvent_atoms.neighbor_ligand_distance
1 1 O ? B HOH 237 ? 6.45 .
2 1 O ? B HOH 319 ? 6.64 .
3 1 O ? B HOH 362 ? 5.84 .
4 1 O ? B HOH 386 ? . 7.52
5 1 O ? B HOH 394 ? . 8.85
6 1 O ? B HOH 411 ? 7.44 .
7 1 O ? B HOH 413 ? 6.20 .
8 1 O ? B HOH 424 ? . 5.97
9 1 O ? B HOH 432 ? . 7.63
10 1 O ? B HOH 435 ? 7.38 .
11 1 O ? B HOH 438 ? 11.53 .
12 1 O ? B HOH 453 ? . 5.88
13 1 O ? C HOH 292 ? 6.09 .
14 1 O ? C HOH 352 ? 7.79 .
15 1 O ? C HOH 357 ? . 6.17
16 1 O ? C HOH 358 ? . 5.81
17 1 O ? C HOH 434 ? . 6.80
18 1 O ? C HOH 443 ? . 7.31
19 1 O ? C HOH 444 ? . 6.87
20 1 O ? D HOH 244 ? 8.11 .
21 1 O ? D HOH 245 ? 7.16 .
22 1 O ? D HOH 275 ? 5.87 .
23 1 O ? D HOH 276 ? 8.58 .
24 1 O ? D HOH 277 ? 10.07 .
25 1 O ? D HOH 278 ? 11.39 .
26 1 O ? D HOH 336 ? 6.80 .
27 1 O ? D HOH 339 ? 6.42 .
28 1 O ? D HOH 341 ? 5.82 .
29 1 O ? D HOH 342 ? 8.32 .
30 1 O ? D HOH 393 ? 7.26 .
31 1 O ? D HOH 399 ? 6.01 .
32 1 O ? D HOH 406 ? . 7.57
33 1 O ? D HOH 419 ? . 10.78
34 1 O ? D HOH 447 ? . 6.10
35 1 O ? D HOH 464 ? 10.14 .
36 1 O ? D HOH 465 ? 12.77 .
37 1 O ? D HOH 472 ? 6.73 .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
1GL O1 O N N 1
1GL C1 C N S 2
1GL C2 C N N 3
1GL C3 C N R 4
1GL O3 O N N 5
1GL C4 C N R 6
1GL O4 O N N 7
1GL CME C N N 8
1GL C5 C N R 9
1GL O5 O N N 10
1GL C6 C N N 11
1GL HO1 H N N 12
1GL H1 H N N 13
1GL H2 H N N 14
1GL H22 H N N 15
1GL H3 H N N 16
1GL HO3 H N N 17
1GL H4 H N N 18
1GL HM41 H N N 19
1GL HM42 H N N 20
1GL HM43 H N N 21
1GL H5 H N N 22
1GL H61 H N N 23
1GL H62 H N N 24
1GL H63 H N N 25
ARI O1 O N N 26
ARI C1 C N R 27
ARI C2 C N N 28
ARI C3 C N N 29
ARI C4 C N R 30
ARI O4 O N N 31
ARI CME C N N 32
ARI CO4 C N N 33
ARI OC4 O N N 34
ARI C5 C N R 35
ARI O5 O N N 36
ARI C6 C N N 37
ARI HO1 H N N 38
ARI H1 H N N 39
ARI H2 H N N 40
ARI H22 H N N 41
ARI H3 H N N 42
ARI H32 H N N 43
ARI H4 H N N 44
ARI H41 H N N 45
ARI H42 H N N 46
ARI H43 H N N 47
ARI H5 H N N 48
ARI H61 H N N 49
ARI H62 H N N 50
ARI H63 H N N 51
CDR O1 O N N 52
CDR C1 C N R 53
CDR C2 C N N 54
CDR C3 C N N 55
CDR C4 C N S 56
CDR O4 O N N 57
CDR C5 C N R 58
CDR O5 O N N 59
CDR C6 C N N 60
CDR HO1 H N N 61
CDR H1 H N N 62
CDR H2 H N N 63
CDR H22 H N N 64
CDR H3 H N N 65
CDR H32 H N N 66
CDR H4 H N N 67
CDR HO4 H N N 68
CDR H5 H N N 69
CDR H61 H N N 70
CDR H62 H N N 71
CDR H63 H N N 72
CPH C1 C N N 73
CPH O1 O N N 74
CPH C2 C N S 75
CPH C3 C N R 76
CPH C4 C N N 77
CPH C5 C Y N 78
CPH C6 C Y N 79
CPH C7 C Y N 80
CPH C8 C Y N 81
CPH O8 O N N 82
CPH C9 C Y N 83
CPH O9 O N N 84
CPH "C1'" C N S 85
CPH "O1'" O N N 86
CPH C10 C Y N 87
CPH "C2'" C N N 88
CPH "O2'" O N N 89
CPH "C3'" C N S 90
CPH "O3'" O N N 91
CPH "C4'" C N R 92
CPH "O4'" O N N 93
CPH C4A C Y N 94
CPH "C5'" C N N 95
CPH C5A C Y N 96
CPH C8A C Y N 97
CPH C9A C Y N 98
CPH CC7 C N N 99
CPH O6 O N N 100
CPH O2 O N N 101
CPH CME C N N 102
CPH H2 H N N 103
CPH H3 H N N 104
CPH H4 H N N 105
CPH H4A H N N 106
CPH H5 H N N 107
CPH HO8 H N N 108
CPH HO9 H N N 109
CPH "H1'" H N N 110
CPH H10 H N N 111
CPH "H3'" H N N 112
CPH "HO3'" H N N 113
CPH "H4'" H N N 114
CPH "HO4'" H N N 115
CPH "H5'" H N N 116
CPH "H5'A" H N N 117
CPH "H5'B" H N N 118
CPH HC7 H N N 119
CPH HC7A H N N 120
CPH HC7B H N N 121
CPH HO6 H N N 122
CPH HO2 H N N 123
CPH HME H N N 124
CPH HMEA H N N 125
CPH HMEB H N N 126
DA OP3 O N N 127
DA P P N N 128
DA OP1 O N N 129
DA OP2 O N N 130
DA "O5'" O N N 131
DA "C5'" C N N 132
DA "C4'" C N R 133
DA "O4'" O N N 134
DA "C3'" C N S 135
DA "O3'" O N N 136
DA "C2'" C N N 137
DA "C1'" C N R 138
DA N9 N Y N 139
DA C8 C Y N 140
DA N7 N Y N 141
DA C5 C Y N 142
DA C6 C Y N 143
DA N6 N N N 144
DA N1 N Y N 145
DA C2 C Y N 146
DA N3 N Y N 147
DA C4 C Y N 148
DA HOP3 H N N 149
DA HOP2 H N N 150
DA "H5'" H N N 151
DA "H5''" H N N 152
DA "H4'" H N N 153
DA "H3'" H N N 154
DA "HO3'" H N N 155
DA "H2'" H N N 156
DA "H2''" H N N 157
DA "H1'" H N N 158
DA H8 H N N 159
DA H61 H N N 160
DA H62 H N N 161
DA H2 H N N 162
DC OP3 O N N 163
DC P P N N 164
DC OP1 O N N 165
DC OP2 O N N 166
DC "O5'" O N N 167
DC "C5'" C N N 168
DC "C4'" C N R 169
DC "O4'" O N N 170
DC "C3'" C N S 171
DC "O3'" O N N 172
DC "C2'" C N N 173
DC "C1'" C N R 174
DC N1 N N N 175
DC C2 C N N 176
DC O2 O N N 177
DC N3 N N N 178
DC C4 C N N 179
DC N4 N N N 180
DC C5 C N N 181
DC C6 C N N 182
DC HOP3 H N N 183
DC HOP2 H N N 184
DC "H5'" H N N 185
DC "H5''" H N N 186
DC "H4'" H N N 187
DC "H3'" H N N 188
DC "HO3'" H N N 189
DC "H2'" H N N 190
DC "H2''" H N N 191
DC "H1'" H N N 192
DC H41 H N N 193
DC H42 H N N 194
DC H5 H N N 195
DC H6 H N N 196
DG OP3 O N N 197
DG P P N N 198
DG OP1 O N N 199
DG OP2 O N N 200
DG "O5'" O N N 201
DG "C5'" C N N 202
DG "C4'" C N R 203
DG "O4'" O N N 204
DG "C3'" C N S 205
DG "O3'" O N N 206
DG "C2'" C N N 207
DG "C1'" C N R 208
DG N9 N Y N 209
DG C8 C Y N 210
DG N7 N Y N 211
DG C5 C Y N 212
DG C6 C N N 213
DG O6 O N N 214
DG N1 N N N 215
DG C2 C N N 216
DG N2 N N N 217
DG N3 N N N 218
DG C4 C Y N 219
DG HOP3 H N N 220
DG HOP2 H N N 221
DG "H5'" H N N 222
DG "H5''" H N N 223
DG "H4'" H N N 224
DG "H3'" H N N 225
DG "HO3'" H N N 226
DG "H2'" H N N 227
DG "H2''" H N N 228
DG "H1'" H N N 229
DG H8 H N N 230
DG H1 H N N 231
DG H21 H N N 232
DG H22 H N N 233
DT OP3 O N N 234
DT P P N N 235
DT OP1 O N N 236
DT OP2 O N N 237
DT "O5'" O N N 238
DT "C5'" C N N 239
DT "C4'" C N R 240
DT "O4'" O N N 241
DT "C3'" C N S 242
DT "O3'" O N N 243
DT "C2'" C N N 244
DT "C1'" C N R 245
DT N1 N N N 246
DT C2 C N N 247
DT O2 O N N 248
DT N3 N N N 249
DT C4 C N N 250
DT O4 O N N 251
DT C5 C N N 252
DT C7 C N N 253
DT C6 C N N 254
DT HOP3 H N N 255
DT HOP2 H N N 256
DT "H5'" H N N 257
DT "H5''" H N N 258
DT "H4'" H N N 259
DT "H3'" H N N 260
DT "HO3'" H N N 261
DT "H2'" H N N 262
DT "H2''" H N N 263
DT "H1'" H N N 264
DT H3 H N N 265
DT H71 H N N 266
DT H72 H N N 267
DT H73 H N N 268
DT H6 H N N 269
ERI O1 O N N 270
ERI C1 C N R 271
ERI C2 C N N 272
ERI C3 C N S 273
ERI O3 O N N 274
ERI CC3 C N N 275
ERI C4 C N S 276
ERI O4 O N N 277
ERI CME C N N 278
ERI CO4 C N N 279
ERI OC4 O N N 280
ERI C5 C N S 281
ERI O5 O N N 282
ERI C6 C N N 283
ERI HO1 H N N 284
ERI H1 H N N 285
ERI H21 H N N 286
ERI H22 H N N 287
ERI HO3 H N N 288
ERI H31 H N N 289
ERI H32 H N N 290
ERI H33 H N N 291
ERI H4 H N N 292
ERI H41 H N N 293
ERI H42 H N N 294
ERI H43 H N N 295
ERI H5 H N N 296
ERI H61 H N N 297
ERI H62 H N N 298
ERI H63 H N N 299
HOH O O N N 300
HOH H1 H N N 301
HOH H2 H N N 302
MG MG MG N N 303
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1GL O1 C1 sing N N 1
1GL O1 HO1 sing N N 2
1GL C1 C2 sing N N 3
1GL C1 O5 sing N N 4
1GL C1 H1 sing N N 5
1GL C2 C3 sing N N 6
1GL C2 H2 sing N N 7
1GL C2 H22 sing N N 8
1GL C3 O3 sing N N 9
1GL C3 C4 sing N N 10
1GL C3 H3 sing N N 11
1GL O3 HO3 sing N N 12
1GL C4 O4 sing N N 13
1GL C4 C5 sing N N 14
1GL C4 H4 sing N N 15
1GL O4 CME sing N N 16
1GL CME HM41 sing N N 17
1GL CME HM42 sing N N 18
1GL CME HM43 sing N N 19
1GL C5 O5 sing N N 20
1GL C5 C6 sing N N 21
1GL C5 H5 sing N N 22
1GL C6 H61 sing N N 23
1GL C6 H62 sing N N 24
1GL C6 H63 sing N N 25
ARI O1 C1 sing N N 26
ARI O1 HO1 sing N N 27
ARI C1 C2 sing N N 28
ARI C1 O5 sing N N 29
ARI C1 H1 sing N N 30
ARI C2 C3 sing N N 31
ARI C2 H2 sing N N 32
ARI C2 H22 sing N N 33
ARI C3 C4 sing N N 34
ARI C3 H3 sing N N 35
ARI C3 H32 sing N N 36
ARI C4 O4 sing N N 37
ARI C4 C5 sing N N 38
ARI C4 H4 sing N N 39
ARI O4 CO4 sing N N 40
ARI CME CO4 sing N N 41
ARI CME H41 sing N N 42
ARI CME H42 sing N N 43
ARI CME H43 sing N N 44
ARI CO4 OC4 doub N N 45
ARI C5 O5 sing N N 46
ARI C5 C6 sing N N 47
ARI C5 H5 sing N N 48
ARI C6 H61 sing N N 49
ARI C6 H62 sing N N 50
ARI C6 H63 sing N N 51
CDR O1 C1 sing N N 52
CDR O1 HO1 sing N N 53
CDR C1 C2 sing N N 54
CDR C1 O5 sing N N 55
CDR C1 H1 sing N N 56
CDR C2 C3 sing N N 57
CDR C2 H2 sing N N 58
CDR C2 H22 sing N N 59
CDR C3 C4 sing N N 60
CDR C3 H3 sing N N 61
CDR C3 H32 sing N N 62
CDR C4 O4 sing N N 63
CDR C4 C5 sing N N 64
CDR C4 H4 sing N N 65
CDR O4 HO4 sing N N 66
CDR C5 O5 sing N N 67
CDR C5 C6 sing N N 68
CDR C5 H5 sing N N 69
CDR C6 H61 sing N N 70
CDR C6 H62 sing N N 71
CDR C6 H63 sing N N 72
CPH O1 C1 doub N N 73
CPH C9A C1 sing N N 74
CPH C1 C2 sing N N 75
CPH C2 O2 sing N N 76
CPH C2 C3 sing N N 77
CPH C2 H2 sing N N 78
CPH C3 C4 sing N N 79
CPH C3 "C1'" sing N N 80
CPH C3 H3 sing N N 81
CPH C4A C4 sing N N 82
CPH C4 H4 sing N N 83
CPH C4 H4A sing N N 84
CPH C6 C5 doub Y N 85
CPH C5 C5A sing Y N 86
CPH C5 H5 sing N N 87
CPH C7 C6 sing Y N 88
CPH O6 C6 sing N N 89
CPH CC7 C7 sing N N 90
CPH C7 C8 doub Y N 91
CPH O8 C8 sing N N 92
CPH C8 C8A sing Y N 93
CPH O8 HO8 sing N N 94
CPH O9 C9 sing N N 95
CPH C8A C9 doub Y N 96
CPH C9 C9A sing Y N 97
CPH O9 HO9 sing N N 98
CPH "C2'" "C1'" sing N N 99
CPH "C1'" "O1'" sing N N 100
CPH "C1'" "H1'" sing N N 101
CPH "O1'" CME sing N N 102
CPH C5A C10 doub Y N 103
CPH C10 C4A sing Y N 104
CPH C10 H10 sing N N 105
CPH "O2'" "C2'" doub N N 106
CPH "C2'" "C3'" sing N N 107
CPH "O3'" "C3'" sing N N 108
CPH "C3'" "C4'" sing N N 109
CPH "C3'" "H3'" sing N N 110
CPH "O3'" "HO3'" sing N N 111
CPH "O4'" "C4'" sing N N 112
CPH "C4'" "C5'" sing N N 113
CPH "C4'" "H4'" sing N N 114
CPH "O4'" "HO4'" sing N N 115
CPH C9A C4A doub Y N 116
CPH "C5'" "H5'" sing N N 117
CPH "C5'" "H5'A" sing N N 118
CPH "C5'" "H5'B" sing N N 119
CPH C8A C5A sing Y N 120
CPH CC7 HC7 sing N N 121
CPH CC7 HC7A sing N N 122
CPH CC7 HC7B sing N N 123
CPH O6 HO6 sing N N 124
CPH O2 HO2 sing N N 125
CPH CME HME sing N N 126
CPH CME HMEA sing N N 127
CPH CME HMEB sing N N 128
DA OP3 P sing N N 129
DA OP3 HOP3 sing N N 130
DA P OP1 doub N N 131
DA P OP2 sing N N 132
DA P "O5'" sing N N 133
DA OP2 HOP2 sing N N 134
DA "O5'" "C5'" sing N N 135
DA "C5'" "C4'" sing N N 136
DA "C5'" "H5'" sing N N 137
DA "C5'" "H5''" sing N N 138
DA "C4'" "O4'" sing N N 139
DA "C4'" "C3'" sing N N 140
DA "C4'" "H4'" sing N N 141
DA "O4'" "C1'" sing N N 142
DA "C3'" "O3'" sing N N 143
DA "C3'" "C2'" sing N N 144
DA "C3'" "H3'" sing N N 145
DA "O3'" "HO3'" sing N N 146
DA "C2'" "C1'" sing N N 147
DA "C2'" "H2'" sing N N 148
DA "C2'" "H2''" sing N N 149
DA "C1'" N9 sing N N 150
DA "C1'" "H1'" sing N N 151
DA N9 C8 sing Y N 152
DA N9 C4 sing Y N 153
DA C8 N7 doub Y N 154
DA C8 H8 sing N N 155
DA N7 C5 sing Y N 156
DA C5 C6 sing Y N 157
DA C5 C4 doub Y N 158
DA C6 N6 sing N N 159
DA C6 N1 doub Y N 160
DA N6 H61 sing N N 161
DA N6 H62 sing N N 162
DA N1 C2 sing Y N 163
DA C2 N3 doub Y N 164
DA C2 H2 sing N N 165
DA N3 C4 sing Y N 166
DC OP3 P sing N N 167
DC OP3 HOP3 sing N N 168
DC P OP1 doub N N 169
DC P OP2 sing N N 170
DC P "O5'" sing N N 171
DC OP2 HOP2 sing N N 172
DC "O5'" "C5'" sing N N 173
DC "C5'" "C4'" sing N N 174
DC "C5'" "H5'" sing N N 175
DC "C5'" "H5''" sing N N 176
DC "C4'" "O4'" sing N N 177
DC "C4'" "C3'" sing N N 178
DC "C4'" "H4'" sing N N 179
DC "O4'" "C1'" sing N N 180
DC "C3'" "O3'" sing N N 181
DC "C3'" "C2'" sing N N 182
DC "C3'" "H3'" sing N N 183
DC "O3'" "HO3'" sing N N 184
DC "C2'" "C1'" sing N N 185
DC "C2'" "H2'" sing N N 186
DC "C2'" "H2''" sing N N 187
DC "C1'" N1 sing N N 188
DC "C1'" "H1'" sing N N 189
DC N1 C2 sing N N 190
DC N1 C6 sing N N 191
DC C2 O2 doub N N 192
DC C2 N3 sing N N 193
DC N3 C4 doub N N 194
DC C4 N4 sing N N 195
DC C4 C5 sing N N 196
DC N4 H41 sing N N 197
DC N4 H42 sing N N 198
DC C5 C6 doub N N 199
DC C5 H5 sing N N 200
DC C6 H6 sing N N 201
DG OP3 P sing N N 202
DG OP3 HOP3 sing N N 203
DG P OP1 doub N N 204
DG P OP2 sing N N 205
DG P "O5'" sing N N 206
DG OP2 HOP2 sing N N 207
DG "O5'" "C5'" sing N N 208
DG "C5'" "C4'" sing N N 209
DG "C5'" "H5'" sing N N 210
DG "C5'" "H5''" sing N N 211
DG "C4'" "O4'" sing N N 212
DG "C4'" "C3'" sing N N 213
DG "C4'" "H4'" sing N N 214
DG "O4'" "C1'" sing N N 215
DG "C3'" "O3'" sing N N 216
DG "C3'" "C2'" sing N N 217
DG "C3'" "H3'" sing N N 218
DG "O3'" "HO3'" sing N N 219
DG "C2'" "C1'" sing N N 220
DG "C2'" "H2'" sing N N 221
DG "C2'" "H2''" sing N N 222
DG "C1'" N9 sing N N 223
DG "C1'" "H1'" sing N N 224
DG N9 C8 sing Y N 225
DG N9 C4 sing Y N 226
DG C8 N7 doub Y N 227
DG C8 H8 sing N N 228
DG N7 C5 sing Y N 229
DG C5 C6 sing N N 230
DG C5 C4 doub Y N 231
DG C6 O6 doub N N 232
DG C6 N1 sing N N 233
DG N1 C2 sing N N 234
DG N1 H1 sing N N 235
DG C2 N2 sing N N 236
DG C2 N3 doub N N 237
DG N2 H21 sing N N 238
DG N2 H22 sing N N 239
DG N3 C4 sing N N 240
DT OP3 P sing N N 241
DT OP3 HOP3 sing N N 242
DT P OP1 doub N N 243
DT P OP2 sing N N 244
DT P "O5'" sing N N 245
DT OP2 HOP2 sing N N 246
DT "O5'" "C5'" sing N N 247
DT "C5'" "C4'" sing N N 248
DT "C5'" "H5'" sing N N 249
DT "C5'" "H5''" sing N N 250
DT "C4'" "O4'" sing N N 251
DT "C4'" "C3'" sing N N 252
DT "C4'" "H4'" sing N N 253
DT "O4'" "C1'" sing N N 254
DT "C3'" "O3'" sing N N 255
DT "C3'" "C2'" sing N N 256
DT "C3'" "H3'" sing N N 257
DT "O3'" "HO3'" sing N N 258
DT "C2'" "C1'" sing N N 259
DT "C2'" "H2'" sing N N 260
DT "C2'" "H2''" sing N N 261
DT "C1'" N1 sing N N 262
DT "C1'" "H1'" sing N N 263
DT N1 C2 sing N N 264
DT N1 C6 sing N N 265
DT C2 O2 doub N N 266
DT C2 N3 sing N N 267
DT N3 C4 sing N N 268
DT N3 H3 sing N N 269
DT C4 O4 doub N N 270
DT C4 C5 sing N N 271
DT C5 C7 sing N N 272
DT C5 C6 doub N N 273
DT C7 H71 sing N N 274
DT C7 H72 sing N N 275
DT C7 H73 sing N N 276
DT C6 H6 sing N N 277
ERI O1 C1 sing N N 278
ERI O1 HO1 sing N N 279
ERI C1 C2 sing N N 280
ERI C1 O5 sing N N 281
ERI C1 H1 sing N N 282
ERI C2 C3 sing N N 283
ERI C2 H21 sing N N 284
ERI C2 H22 sing N N 285
ERI C3 O3 sing N N 286
ERI C3 CC3 sing N N 287
ERI C3 C4 sing N N 288
ERI O3 HO3 sing N N 289
ERI CC3 H31 sing N N 290
ERI CC3 H32 sing N N 291
ERI CC3 H33 sing N N 292
ERI C4 O4 sing N N 293
ERI C4 C5 sing N N 294
ERI C4 H4 sing N N 295
ERI O4 CO4 sing N N 296
ERI CME CO4 sing N N 297
ERI CME H41 sing N N 298
ERI CME H42 sing N N 299
ERI CME H43 sing N N 300
ERI CO4 OC4 doub N N 301
ERI C5 O5 sing N N 302
ERI C5 C6 sing N N 303
ERI C5 H5 sing N N 304
ERI C6 H61 sing N N 305
ERI C6 H62 sing N N 306
ERI C6 H63 sing N N 307
HOH O H1 sing N N 308
HOH O H2 sing N N 309
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
1VAQ 'double helix'
1VAQ 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 B DA 8 1_555 -0.048 -0.305 -0.006 -2.075 -10.498 -0.177 1 A_DT1:DA16_B A 1 ? B 16 ? 20 1
1 A DT 2 1_555 B DA 7 1_555 0.243 -0.394 -0.168 -9.891 -5.520 7.218 2 A_DT2:DA15_B A 2 ? B 15 ? 20 1
1 A DG 3 1_555 B DC 6 1_555 -0.267 -0.191 -0.397 -8.848 -7.540 -1.547 3 A_DG3:DC14_B A 3 ? B 14 ? 19 1
1 A DG 4 1_555 B DC 5 1_555 -0.102 -0.092 -0.153 -2.879 5.070 3.092 4 A_DG4:DC13_B A 4 ? B 13 ? 19 1
1 A DC 5 1_555 B DG 4 1_555 0.379 0.028 -0.404 2.581 0.159 6.180 5 A_DC5:DG12_B A 5 ? B 12 ? 19 1
1 A DC 6 1_555 B DG 3 1_555 0.390 -0.269 -0.144 5.117 -2.637 1.273 6 A_DC6:DG11_B A 6 ? B 11 ? 19 1
1 A DA 7 1_555 B DT 2 1_555 -0.076 -0.068 -0.252 8.334 -4.559 5.123 7 A_DA7:DT10_B A 7 ? B 10 ? 20 1
1 A DA 8 1_555 B DT 1 1_555 0.187 -0.093 -0.510 1.622 -13.157 -3.070 8 A_DA8:DT9_B A 8 ? B 9 ? 20 1
1 C DT 1 1_555 D DA 8 1_555 -0.520 -0.269 -0.866 5.250 -12.237 6.914 9 C_DT41:DA56_D C 41 ? D 56 ? 20 1
1 C DT 2 1_555 D DA 7 1_555 0.317 -0.024 -0.559 -1.117 -7.248 5.963 10 C_DT42:DA55_D C 42 ? D 55 ? 20 1
1 C DG 3 1_555 D DC 6 1_555 -0.114 -0.375 -0.261 -4.498 -4.518 -0.658 11 C_DG43:DC54_D C 43 ? D 54 ? 19 1
1 C DG 4 1_555 D DC 5 1_555 -0.300 -0.060 0.217 4.417 -2.176 1.998 12 C_DG44:DC53_D C 44 ? D 53 ? 19 1
1 C DC 5 1_555 D DG 4 1_555 -0.002 -0.168 -0.200 9.577 -7.523 -2.457 13 C_DC45:DG52_D C 45 ? D 52 ? 19 1
1 C DC 6 1_555 D DG 3 1_555 0.370 -0.222 0.104 4.785 -13.881 1.566 14 C_DC46:DG51_D C 46 ? D 51 ? 19 1
1 C DA 7 1_555 D DT 2 1_555 -0.175 -0.170 -0.375 -4.257 -2.293 -2.016 15 C_DA47:DT50_D C 47 ? D 50 ? 20 1
1 C DA 8 1_555 D DT 1 1_555 0.091 -0.246 -0.256 2.238 -16.129 -1.561 16 C_DA48:DT49_D C 48 ? D 49 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 B DA 8 1_555 A DT 2 1_555 B DA 7 1_555 0.569 -0.697 3.533 3.767 8.805 37.972 -2.169 -0.367 3.335 13.276 -5.680
39.118 1 AA_DT1DT2:DA15DA16_BB A 1 ? B 16 ? A 2 ? B 15 ?
1 A DT 2 1_555 B DA 7 1_555 A DG 3 1_555 B DC 6 1_555 0.646 -0.987 3.252 0.612 17.168 28.435 -4.391 -1.038 2.312 31.572 -1.125
33.129 2 AA_DT2DG3:DC14DA15_BB A 2 ? B 15 ? A 3 ? B 14 ?
1 A DG 3 1_555 B DC 6 1_555 A DG 4 1_555 B DC 5 1_555 1.122 -2.364 3.301 -2.683 -2.232 22.644 -5.142 -3.801 3.361 -5.641 6.782
22.908 3 AA_DG3DG4:DC13DC14_BB A 3 ? B 14 ? A 4 ? B 13 ?
1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 -0.265 -2.616 3.096 2.138 0.385 32.775 -4.688 0.812 3.043 0.682 -3.783
32.845 4 AA_DG4DC5:DG12DC13_BB A 4 ? B 13 ? A 5 ? B 12 ?
1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 -1.696 -2.316 3.254 -4.281 1.349 20.928 -6.799 2.783 3.374 3.659 11.612
21.399 5 AA_DC5DC6:DG11DG12_BB A 5 ? B 12 ? A 6 ? B 11 ?
1 A DC 6 1_555 B DG 3 1_555 A DA 7 1_555 B DT 2 1_555 -0.895 -0.972 3.159 1.832 10.424 30.524 -3.439 1.908 2.637 19.094 -3.355
32.266 6 AA_DC6DA7:DT10DG11_BB A 6 ? B 11 ? A 7 ? B 10 ?
1 A DA 7 1_555 B DT 2 1_555 A DA 8 1_555 B DT 1 1_555 -0.657 -0.362 3.636 1.101 4.295 36.986 -1.196 1.190 3.553 6.740 -1.727
37.241 7 AA_DA7DA8:DT9DT10_BB A 7 ? B 10 ? A 8 ? B 9 ?
1 C DT 1 1_555 D DA 8 1_555 C DT 2 1_555 D DA 7 1_555 -0.229 -0.314 3.476 0.296 7.205 33.380 -1.738 0.439 3.336 12.364 -0.507
34.128 8 CC_DT41DT42:DA55DA56_DD C 41 ? D 56 ? C 42 ? D 55 ?
1 C DT 2 1_555 D DA 7 1_555 C DG 3 1_555 D DC 6 1_555 -0.567 -0.029 3.321 -12.740 9.035 38.943 -1.030 -0.601 3.260 12.937 18.242
41.845 9 CC_DT42DG43:DC54DA55_DD C 42 ? D 55 ? C 43 ? D 54 ?
1 C DG 3 1_555 D DC 6 1_555 C DG 4 1_555 D DC 5 1_555 1.191 -2.349 3.024 -2.186 4.790 21.326 -7.700 -3.827 2.314 12.695 5.795
21.960 10 CC_DG43DG44:DC53DC54_DD C 43 ? D 54 ? C 44 ? D 53 ?
1 C DG 4 1_555 D DC 5 1_555 C DC 5 1_555 D DG 4 1_555 -0.191 -2.245 3.150 2.277 -4.605 31.092 -3.268 0.781 3.417 -8.518 -4.212
31.503 11 CC_DG44DC45:DG52DC53_DD C 44 ? D 53 ? C 45 ? D 52 ?
1 C DC 5 1_555 D DG 4 1_555 C DC 6 1_555 D DG 3 1_555 -0.890 -1.927 3.347 -3.040 5.142 29.846 -4.689 1.095 3.053 9.860 5.828
30.425 12 CC_DC45DC46:DG51DG52_DD C 45 ? D 52 ? C 46 ? D 51 ?
1 C DC 6 1_555 D DG 3 1_555 C DA 7 1_555 D DT 2 1_555 -0.176 -0.422 3.392 7.866 17.910 32.380 -2.991 1.300 2.697 29.047 -12.758
37.694 13 CC_DC46DA47:DT50DG51_DD C 46 ? D 51 ? C 47 ? D 50 ?
1 C DA 7 1_555 D DT 2 1_555 C DA 8 1_555 D DT 1 1_555 -0.424 0.080 3.121 -0.464 -0.791 36.936 0.228 0.610 3.124 -1.249 0.732
36.947 14 CC_DA47DA48:DT49DT50_DD C 47 ? D 50 ? C 48 ? D 49 ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 ARI 1 n
2 1GL 2 n
3 CDR 1 n
3 CDR 2 n
3 ERI 3 n
#
_atom_sites.entry_id 1VAQ
_atom_sites.fract_transf_matrix[1][1] 0.023680
_atom_sites.fract_transf_matrix[1][2] 0.013672
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.027343
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.004063
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_