HEADER LIPID BINDING PROTEIN 20-FEB-04 1VAZ TITLE SOLUTION STRUCTURES OF THE P47 SEP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NSFL1 COFACTOR P47; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P47 SEP DOMAIN (RESIDUES 1-76); COMPND 5 SYNONYM: P97 COFACTOR P47, XY BODY-ASSOCIATED PROTEIN XY40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 TISSUE: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS BETA-BETA-BETA-ALPHA-ALPHA-BETA, NOVEL FOLD, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.YUAN,P.SIMPSON,C.MCKEOWN,H.KONDO,K.UCHIYAMA,R.WALLIS,I.DREVENY, AUTHOR 2 C.KEETCH,X.ZHANG,C.ROBINSON,P.FREEMONT,S.MATTHEWS REVDAT 6 27-DEC-23 1VAZ 1 REMARK REVDAT 5 02-MAR-22 1VAZ 1 REMARK SEQADV REVDAT 4 24-FEB-09 1VAZ 1 VERSN REVDAT 3 27-APR-04 1VAZ 1 JRNL REVDAT 2 13-APR-04 1VAZ 1 AUTHOR REVDAT 1 06-APR-04 1VAZ 0 JRNL AUTH X.YUAN,P.SIMPSON,C.MCKEOWN,H.KONDO,K.UCHIYAMA,R.WALLIS, JRNL AUTH 2 I.DREVENY,C.KEETCH,X.ZHANG,C.ROBINSON,P.FREEMONT,S.MATTHEWS JRNL TITL STRUCTURE, DYNAMICS AND INTERACTIONS OF P47, A MAJOR ADAPTOR JRNL TITL 2 OF THE AAA ATPASE, P97. JRNL REF EMBO J. V. 23 1463 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15029246 JRNL DOI 10.1038/SJ.EMBOJ.7600152 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, X-PLOR 3.851 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VAZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000006417. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.3 REMARK 210 IONIC STRENGTH : 20MM NAAC REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 13C, 15N-LABELLED P47(171-270) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.1.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TRP A 17 O GLY A 20 1.40 REMARK 500 O LEU A 52 H HIS A 57 1.43 REMARK 500 O SER A 42 H GLY A 46 1.45 REMARK 500 O GLN A 38 H SER A 42 1.54 REMARK 500 O SER A 30 H ASP A 33 1.54 REMARK 500 O PHE A 39 HB ILE A 43 1.55 REMARK 500 O PRO A 34 H ALA A 37 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 -155.84 -159.46 REMARK 500 1 GLN A 8 158.06 -42.48 REMARK 500 1 LEU A 23 108.36 -160.99 REMARK 500 1 ASP A 24 -175.09 58.60 REMARK 500 1 ASP A 33 -169.25 -63.00 REMARK 500 1 ALA A 50 -63.57 -101.08 REMARK 500 1 LEU A 55 -60.52 -100.77 REMARK 500 1 HIS A 57 45.07 73.29 REMARK 500 1 HIS A 68 61.48 -158.94 REMARK 500 1 PHE A 73 70.65 39.48 REMARK 500 2 SER A 6 -72.85 65.86 REMARK 500 2 LYS A 18 -26.12 -37.16 REMARK 500 2 THR A 19 28.91 -171.46 REMARK 500 2 LEU A 23 125.47 -171.82 REMARK 500 2 ASP A 24 173.22 58.57 REMARK 500 2 ASP A 33 -170.71 -64.58 REMARK 500 2 GLU A 47 89.30 -152.22 REMARK 500 2 PRO A 49 -156.74 -88.75 REMARK 500 2 HIS A 57 71.84 61.92 REMARK 500 2 HIS A 68 60.94 -156.50 REMARK 500 3 ARG A 3 -151.85 -76.97 REMARK 500 3 HIS A 5 42.61 -173.60 REMARK 500 3 GLN A 8 135.19 58.70 REMARK 500 3 LYS A 18 -33.93 -38.34 REMARK 500 3 THR A 19 27.09 -157.81 REMARK 500 3 ASP A 24 -139.18 67.64 REMARK 500 3 ASP A 27 -174.66 -65.82 REMARK 500 3 TYR A 31 -17.91 -49.09 REMARK 500 3 VAL A 48 89.92 -151.26 REMARK 500 3 PRO A 49 -159.75 -86.65 REMARK 500 3 HIS A 57 37.28 38.57 REMARK 500 3 HIS A 68 55.47 -147.35 REMARK 500 3 LYS A 75 101.97 48.34 REMARK 500 4 ASP A 9 157.48 57.87 REMARK 500 4 ASP A 24 -140.01 65.71 REMARK 500 4 ASP A 27 -177.97 -63.32 REMARK 500 4 ASP A 33 167.60 -41.73 REMARK 500 4 HIS A 57 66.41 70.50 REMARK 500 4 HIS A 68 27.29 178.07 REMARK 500 4 GLU A 71 70.38 -154.64 REMARK 500 4 VAL A 74 93.31 41.51 REMARK 500 4 LYS A 75 155.94 -47.77 REMARK 500 5 ARG A 2 121.67 59.54 REMARK 500 5 ARG A 3 -81.22 -108.28 REMARK 500 5 SER A 6 176.79 -48.84 REMARK 500 5 ASP A 9 -176.41 -65.05 REMARK 500 5 THR A 19 23.29 -141.52 REMARK 500 5 LEU A 23 113.31 -167.97 REMARK 500 5 ASP A 24 -174.03 61.49 REMARK 500 5 ASP A 33 156.88 -35.31 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 2 0.32 SIDE CHAIN REMARK 500 1 ARG A 3 0.13 SIDE CHAIN REMARK 500 1 ARG A 4 0.32 SIDE CHAIN REMARK 500 1 ARG A 29 0.28 SIDE CHAIN REMARK 500 1 ARG A 44 0.31 SIDE CHAIN REMARK 500 1 ARG A 45 0.19 SIDE CHAIN REMARK 500 1 ARG A 53 0.24 SIDE CHAIN REMARK 500 1 ARG A 54 0.25 SIDE CHAIN REMARK 500 1 ARG A 69 0.19 SIDE CHAIN REMARK 500 2 ARG A 2 0.20 SIDE CHAIN REMARK 500 2 ARG A 3 0.10 SIDE CHAIN REMARK 500 2 ARG A 4 0.22 SIDE CHAIN REMARK 500 2 ARG A 29 0.30 SIDE CHAIN REMARK 500 2 ARG A 44 0.31 SIDE CHAIN REMARK 500 2 ARG A 45 0.26 SIDE CHAIN REMARK 500 2 ARG A 53 0.23 SIDE CHAIN REMARK 500 2 ARG A 54 0.25 SIDE CHAIN REMARK 500 2 ARG A 69 0.23 SIDE CHAIN REMARK 500 3 ARG A 2 0.31 SIDE CHAIN REMARK 500 3 ARG A 3 0.32 SIDE CHAIN REMARK 500 3 ARG A 29 0.22 SIDE CHAIN REMARK 500 3 ARG A 44 0.28 SIDE CHAIN REMARK 500 3 ARG A 45 0.21 SIDE CHAIN REMARK 500 3 ARG A 53 0.31 SIDE CHAIN REMARK 500 3 ARG A 54 0.27 SIDE CHAIN REMARK 500 3 ARG A 69 0.26 SIDE CHAIN REMARK 500 4 ARG A 2 0.32 SIDE CHAIN REMARK 500 4 ARG A 3 0.29 SIDE CHAIN REMARK 500 4 ARG A 4 0.30 SIDE CHAIN REMARK 500 4 ARG A 29 0.23 SIDE CHAIN REMARK 500 4 ARG A 44 0.22 SIDE CHAIN REMARK 500 4 ARG A 45 0.24 SIDE CHAIN REMARK 500 4 ARG A 53 0.23 SIDE CHAIN REMARK 500 4 ARG A 54 0.29 SIDE CHAIN REMARK 500 4 ARG A 69 0.25 SIDE CHAIN REMARK 500 5 ARG A 2 0.27 SIDE CHAIN REMARK 500 5 ARG A 3 0.31 SIDE CHAIN REMARK 500 5 ARG A 29 0.32 SIDE CHAIN REMARK 500 5 ARG A 44 0.23 SIDE CHAIN REMARK 500 5 ARG A 45 0.28 SIDE CHAIN REMARK 500 5 ARG A 54 0.08 SIDE CHAIN REMARK 500 5 ARG A 69 0.30 SIDE CHAIN REMARK 500 6 ARG A 3 0.31 SIDE CHAIN REMARK 500 6 ARG A 4 0.32 SIDE CHAIN REMARK 500 6 ARG A 29 0.28 SIDE CHAIN REMARK 500 6 ARG A 44 0.14 SIDE CHAIN REMARK 500 6 ARG A 45 0.28 SIDE CHAIN REMARK 500 6 ARG A 53 0.32 SIDE CHAIN REMARK 500 6 ARG A 54 0.27 SIDE CHAIN REMARK 500 6 ARG A 69 0.28 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 85 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1VAZ A 1 76 UNP O35987 NSF1C_RAT 171 246 SEQADV 1VAZ MET A -11 UNP O35987 EXPRESSION TAG SEQADV 1VAZ ARG A -10 UNP O35987 EXPRESSION TAG SEQADV 1VAZ GLY A -9 UNP O35987 EXPRESSION TAG SEQADV 1VAZ SER A -8 UNP O35987 EXPRESSION TAG SEQADV 1VAZ HIS A -7 UNP O35987 EXPRESSION TAG SEQADV 1VAZ HIS A -6 UNP O35987 EXPRESSION TAG SEQADV 1VAZ HIS A -5 UNP O35987 EXPRESSION TAG SEQADV 1VAZ HIS A -4 UNP O35987 EXPRESSION TAG SEQADV 1VAZ HIS A -3 UNP O35987 EXPRESSION TAG SEQADV 1VAZ HIS A -2 UNP O35987 EXPRESSION TAG SEQADV 1VAZ GLY A -1 UNP O35987 EXPRESSION TAG SEQADV 1VAZ SER A 0 UNP O35987 EXPRESSION TAG SEQRES 1 A 88 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 A 88 ARG ARG ARG HIS SER GLY GLN ASP VAL HIS VAL VAL LEU SEQRES 3 A 88 LYS LEU TRP LYS THR GLY PHE SER LEU ASP ASN GLY ASP SEQRES 4 A 88 LEU ARG SER TYR GLN ASP PRO SER ASN ALA GLN PHE LEU SEQRES 5 A 88 GLU SER ILE ARG ARG GLY GLU VAL PRO ALA GLU LEU ARG SEQRES 6 A 88 ARG LEU ALA HIS GLY GLY GLN VAL ASN LEU ASP MET GLU SEQRES 7 A 88 ASP HIS ARG ASP GLU ASP PHE VAL LYS PRO HELIX 1 1 SER A 35 GLY A 46 1 12 HELIX 2 2 ALA A 50 LEU A 55 1 6 SHEET 1 A 4 LEU A 28 SER A 30 0 SHEET 2 A 4 GLY A 20 SER A 22 -1 N PHE A 21 O ARG A 29 SHEET 3 A 4 HIS A 11 TRP A 17 -1 N TRP A 17 O GLY A 20 SHEET 4 A 4 ASN A 62 ASP A 67 1 O ASN A 62 N VAL A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1