HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-FEB-04 1VB7 TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF PDZ AND LIM DOMAIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ AND LIM DOMAIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDNA 2310041E13; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030203-89; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN PDZ-LIM PROTEIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HATTA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1VB7 1 REMARK REVDAT 3 02-MAR-22 1VB7 1 REMARK SEQADV REVDAT 2 24-FEB-09 1VB7 1 VERSN REVDAT 1 30-AUG-04 1VB7 0 JRNL AUTH R.HATTA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF PDZ AND LIM DOMAIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VB7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000006425. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.28MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM PHOSPHATE BUFFER; 100MM REMARK 210 NACL; 1MM D10-DTT; 0.02% NAN3; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2002045, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.860, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 55 O GLN A 84 1.55 REMARK 500 O VAL A 55 H ALA A 62 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -62.35 77.00 REMARK 500 1 SER A 6 97.36 58.78 REMARK 500 1 PRO A 15 -167.84 -75.01 REMARK 500 1 ILE A 32 99.53 -66.50 REMARK 500 1 ALA A 43 -70.56 -43.31 REMARK 500 1 ALA A 46 -81.63 -66.56 REMARK 500 1 ASP A 47 40.74 173.86 REMARK 500 1 SER A 61 140.20 -38.77 REMARK 500 1 ASN A 64 63.78 -116.94 REMARK 500 1 GLN A 76 36.54 -89.68 REMARK 500 2 PRO A 15 -166.15 -74.99 REMARK 500 2 ALA A 46 -94.04 -67.21 REMARK 500 2 ASP A 47 34.66 -172.63 REMARK 500 2 SER A 61 142.55 -38.74 REMARK 500 2 SER A 93 128.89 -39.45 REMARK 500 3 SER A 2 -58.42 -121.17 REMARK 500 3 PRO A 15 -162.06 -74.96 REMARK 500 3 ARG A 40 28.78 42.53 REMARK 500 3 ALA A 43 -70.64 -51.63 REMARK 500 3 ALA A 46 -94.18 -73.12 REMARK 500 3 ASP A 47 35.52 -172.72 REMARK 500 3 SER A 61 150.45 -44.25 REMARK 500 3 SER A 89 124.50 61.84 REMARK 500 4 SER A 3 94.71 -64.34 REMARK 500 4 SER A 5 -58.11 -135.60 REMARK 500 4 PRO A 15 -161.81 -74.94 REMARK 500 4 ALA A 43 -71.88 -65.27 REMARK 500 4 ALA A 46 -93.90 -70.82 REMARK 500 4 ASP A 47 34.33 -169.40 REMARK 500 4 SER A 61 145.21 -39.94 REMARK 500 4 ASN A 64 55.50 -114.75 REMARK 500 5 SER A 3 93.16 -162.37 REMARK 500 5 PRO A 15 -162.07 -74.97 REMARK 500 5 ALA A 46 -94.41 -74.75 REMARK 500 5 ASP A 47 33.93 -170.48 REMARK 500 5 SER A 61 144.81 -39.41 REMARK 500 5 ASN A 64 61.06 -114.34 REMARK 500 5 SER A 89 132.36 66.93 REMARK 500 5 SER A 92 72.07 -118.27 REMARK 500 6 SER A 2 113.81 -177.34 REMARK 500 6 SER A 5 112.27 59.41 REMARK 500 6 PRO A 15 -166.91 -75.03 REMARK 500 6 ARG A 40 31.29 38.10 REMARK 500 6 ALA A 43 -72.99 -78.55 REMARK 500 6 ALA A 46 -72.34 -60.19 REMARK 500 6 ASP A 47 46.30 163.36 REMARK 500 6 SER A 61 147.96 -39.53 REMARK 500 6 ASN A 64 59.96 -108.40 REMARK 500 6 SER A 92 -59.63 -152.01 REMARK 500 6 SER A 93 124.01 -172.58 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007020120.1 RELATED DB: TARGETDB DBREF 1VB7 A 8 88 UNP Q8R1G6 PDLI2_MOUSE 3 83 SEQADV 1VB7 GLY A 1 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 SER A 2 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 SER A 3 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 GLY A 4 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 SER A 5 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 SER A 6 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 GLY A 7 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 SER A 89 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 GLY A 90 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 PRO A 91 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 SER A 92 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 SER A 93 UNP Q8R1G6 CLONING ARTIFACT SEQADV 1VB7 GLY A 94 UNP Q8R1G6 CLONING ARTIFACT SEQRES 1 A 94 GLY SER SER GLY SER SER GLY LEU THR VAL ASP VAL ALA SEQRES 2 A 94 GLY PRO ALA PRO TRP GLY PHE ARG ILE SER GLY GLY ARG SEQRES 3 A 94 ASP PHE HIS THR PRO ILE ILE VAL THR LYS VAL THR GLU SEQRES 4 A 94 ARG GLY LYS ALA GLU ALA ALA ASP LEU ARG PRO GLY ASP SEQRES 5 A 94 ILE ILE VAL ALA ILE ASN GLY GLN SER ALA GLU ASN MET SEQRES 6 A 94 LEU HIS ALA GLU ALA GLN SER LYS ILE ARG GLN SER ALA SEQRES 7 A 94 SER PRO LEU ARG LEU GLN LEU ASP ARG SER SER GLY PRO SEQRES 8 A 94 SER SER GLY HELIX 1 1 LYS A 42 ASP A 47 1 6 HELIX 2 2 LEU A 66 GLN A 76 1 11 SHEET 1 A 5 LEU A 8 VAL A 12 0 SHEET 2 A 5 LEU A 81 ASP A 86 -1 O LEU A 85 N LEU A 8 SHEET 3 A 5 ILE A 53 ILE A 57 -1 N VAL A 55 O GLN A 84 SHEET 4 A 5 THR A 30 ILE A 33 -1 N ILE A 32 O ILE A 54 SHEET 5 A 5 SER A 23 GLY A 25 -1 N GLY A 25 O THR A 30 SHEET 1 B 4 LEU A 8 VAL A 12 0 SHEET 2 B 4 LEU A 81 ASP A 86 -1 O LEU A 85 N LEU A 8 SHEET 3 B 4 ILE A 53 ILE A 57 -1 N VAL A 55 O GLN A 84 SHEET 4 B 4 GLN A 60 SER A 61 -1 O GLN A 60 N ILE A 57 CISPEP 1 GLY A 14 PRO A 15 1 0.05 CISPEP 2 ALA A 16 PRO A 17 1 -0.03 CISPEP 3 SER A 79 PRO A 80 1 -0.02 CISPEP 4 GLY A 14 PRO A 15 2 0.00 CISPEP 5 ALA A 16 PRO A 17 2 -0.10 CISPEP 6 SER A 79 PRO A 80 2 0.05 CISPEP 7 GLY A 14 PRO A 15 3 -0.03 CISPEP 8 ALA A 16 PRO A 17 3 0.01 CISPEP 9 SER A 79 PRO A 80 3 -0.03 CISPEP 10 GLY A 14 PRO A 15 4 -0.05 CISPEP 11 ALA A 16 PRO A 17 4 -0.04 CISPEP 12 SER A 79 PRO A 80 4 0.02 CISPEP 13 GLY A 14 PRO A 15 5 0.00 CISPEP 14 ALA A 16 PRO A 17 5 0.01 CISPEP 15 SER A 79 PRO A 80 5 -0.03 CISPEP 16 GLY A 14 PRO A 15 6 0.07 CISPEP 17 ALA A 16 PRO A 17 6 0.03 CISPEP 18 SER A 79 PRO A 80 6 -0.04 CISPEP 19 GLY A 14 PRO A 15 7 0.03 CISPEP 20 ALA A 16 PRO A 17 7 -0.05 CISPEP 21 SER A 79 PRO A 80 7 0.03 CISPEP 22 GLY A 14 PRO A 15 8 -0.05 CISPEP 23 ALA A 16 PRO A 17 8 0.03 CISPEP 24 SER A 79 PRO A 80 8 -0.02 CISPEP 25 GLY A 14 PRO A 15 9 0.03 CISPEP 26 ALA A 16 PRO A 17 9 0.05 CISPEP 27 SER A 79 PRO A 80 9 0.03 CISPEP 28 GLY A 14 PRO A 15 10 -0.03 CISPEP 29 ALA A 16 PRO A 17 10 0.05 CISPEP 30 SER A 79 PRO A 80 10 -0.03 CISPEP 31 GLY A 14 PRO A 15 11 -0.04 CISPEP 32 ALA A 16 PRO A 17 11 -0.04 CISPEP 33 SER A 79 PRO A 80 11 -0.01 CISPEP 34 GLY A 14 PRO A 15 12 -0.03 CISPEP 35 ALA A 16 PRO A 17 12 -0.07 CISPEP 36 SER A 79 PRO A 80 12 0.04 CISPEP 37 GLY A 14 PRO A 15 13 -0.05 CISPEP 38 ALA A 16 PRO A 17 13 -0.02 CISPEP 39 SER A 79 PRO A 80 13 0.02 CISPEP 40 GLY A 14 PRO A 15 14 -0.07 CISPEP 41 ALA A 16 PRO A 17 14 0.02 CISPEP 42 SER A 79 PRO A 80 14 0.06 CISPEP 43 GLY A 14 PRO A 15 15 -0.05 CISPEP 44 ALA A 16 PRO A 17 15 -0.05 CISPEP 45 SER A 79 PRO A 80 15 0.02 CISPEP 46 GLY A 14 PRO A 15 16 -0.02 CISPEP 47 ALA A 16 PRO A 17 16 -0.06 CISPEP 48 SER A 79 PRO A 80 16 0.02 CISPEP 49 GLY A 14 PRO A 15 17 0.06 CISPEP 50 ALA A 16 PRO A 17 17 -0.03 CISPEP 51 SER A 79 PRO A 80 17 -0.01 CISPEP 52 GLY A 14 PRO A 15 18 -0.03 CISPEP 53 ALA A 16 PRO A 17 18 -0.01 CISPEP 54 SER A 79 PRO A 80 18 0.00 CISPEP 55 GLY A 14 PRO A 15 19 0.00 CISPEP 56 ALA A 16 PRO A 17 19 0.02 CISPEP 57 SER A 79 PRO A 80 19 -0.07 CISPEP 58 GLY A 14 PRO A 15 20 -0.04 CISPEP 59 ALA A 16 PRO A 17 20 0.01 CISPEP 60 SER A 79 PRO A 80 20 -0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1