data_1VBZ # _entry.id 1VBZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VBZ pdb_00001vbz 10.2210/pdb1vbz/pdb NDB PR0116 ? ? RCSB RCSB006446 ? ? WWPDB D_1000006446 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 4 'Structure model' '_struct_ref_seq_dif.details' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VBZ _pdbx_database_status.recvd_initial_deposition_date 2004-03-03 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DRZ 'cleaved HDV ribozyme' unspecified PDB 1CX0 'cleaved HDV ribozyme' unspecified PDB 1VBX 'the same protein/RNA(C75U) complex in EDTA solution' unspecified PDB 1VBY 'the same protein/RNA(C75U) complex and Mn2+ bound' unspecified PDB 1VC0 'the same protein/RNA(C75U) complex in Imidazole and Sr2+ solutions' unspecified PDB 1SJF 'the same protein/RNA(C75U) complex in Cobalt Hexammine solution' unspecified PDB 1VC5 'the same protein/RNA(wild type) complex in EDTA solution' unspecified PDB 1VC6 'the same protein/RNA(C75U) complex in Imidazole and Mg2+ solutions' unspecified PDB 1VC7 'the same protein/RNA(C75U) complex in Sr2+ solution' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ke, A.' 1 'Zhou, K.' 2 'Ding, F.' 3 'Cate, J.H.D.' 4 'Doudna, J.A.' 5 # _citation.id primary _citation.title 'A Conformational Switch controls hepatitis delta virus ribozyme catalysis' _citation.journal_abbrev NATURE _citation.journal_volume 429 _citation.page_first 201 _citation.page_last 205 _citation.year 2004 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15141216 _citation.pdbx_database_id_DOI 10.1038/nature02522 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ke, A.' 1 ? primary 'Zhou, K.' 2 ? primary 'Ding, F.' 3 ? primary 'Cate, J.H.D.' 4 ? primary 'Doudna, J.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Hepatitis Delta virus ribozyme' 24467.521 1 ? C75U ? ? 2 polymer man 'U1 small nuclear ribonucleoprotein A' 11498.472 1 ? Y31H/Q36R 'U1A_RBD(residues 1-100)' ? 3 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 4 water nat water 18.015 20 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'U1 snRNP protein A, U1A protein, U1-A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGACU GAUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGACU B ? 2 'polypeptide(L)' no no ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'BARIUM ION' BA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 U n 1 4 G n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 G n 1 10 C n 1 11 A n 1 12 U n 1 13 G n 1 14 G n 1 15 U n 1 16 C n 1 17 C n 1 18 C n 1 19 A n 1 20 G n 1 21 C n 1 22 C n 1 23 U n 1 24 C n 1 25 C n 1 26 U n 1 27 C n 1 28 G n 1 29 C n 1 30 U n 1 31 G n 1 32 G n 1 33 C n 1 34 G n 1 35 C n 1 36 C n 1 37 G n 1 38 G n 1 39 C n 1 40 U n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 A n 1 52 U n 1 53 U n 1 54 G n 1 55 C n 1 56 A n 1 57 C n 1 58 U n 1 59 C n 1 60 C n 1 61 G n 1 62 G n 1 63 U n 1 64 G n 1 65 G n 1 66 U n 1 67 G n 1 68 A n 1 69 A n 1 70 U n 1 71 G n 1 72 G n 1 73 G n 1 74 A n 1 75 C n 1 76 U n 2 1 MET n 2 2 ALA n 2 3 VAL n 2 4 PRO n 2 5 GLU n 2 6 THR n 2 7 ARG n 2 8 PRO n 2 9 ASN n 2 10 HIS n 2 11 THR n 2 12 ILE n 2 13 TYR n 2 14 ILE n 2 15 ASN n 2 16 ASN n 2 17 LEU n 2 18 ASN n 2 19 GLU n 2 20 LYS n 2 21 ILE n 2 22 LYS n 2 23 LYS n 2 24 ASP n 2 25 GLU n 2 26 LEU n 2 27 LYS n 2 28 LYS n 2 29 SER n 2 30 LEU n 2 31 HIS n 2 32 ALA n 2 33 ILE n 2 34 PHE n 2 35 SER n 2 36 ARG n 2 37 PHE n 2 38 GLY n 2 39 GLN n 2 40 ILE n 2 41 LEU n 2 42 ASP n 2 43 ILE n 2 44 LEU n 2 45 VAL n 2 46 SER n 2 47 ARG n 2 48 SER n 2 49 LEU n 2 50 LYS n 2 51 MET n 2 52 ARG n 2 53 GLY n 2 54 GLN n 2 55 ALA n 2 56 PHE n 2 57 VAL n 2 58 ILE n 2 59 PHE n 2 60 LYS n 2 61 GLU n 2 62 VAL n 2 63 SER n 2 64 SER n 2 65 ALA n 2 66 THR n 2 67 ASN n 2 68 ALA n 2 69 LEU n 2 70 ARG n 2 71 SER n 2 72 MET n 2 73 GLN n 2 74 GLY n 2 75 PHE n 2 76 PRO n 2 77 PHE n 2 78 TYR n 2 79 ASP n 2 80 LYS n 2 81 PRO n 2 82 MET n 2 83 ARG n 2 84 ILE n 2 85 GLN n 2 86 TYR n 2 87 ALA n 2 88 LYS n 2 89 THR n 2 90 ASP n 2 91 SER n 2 92 ASP n 2 93 ILE n 2 94 ILE n 2 95 ALA n 2 96 LYS n 2 97 MET n 2 98 LYS n 2 99 GLY n 2 100 THR n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA occurs from Hapatitis Delta Virus pathogen, in vitro transcription with pUc19' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 98 ? ? ? B . n A 1 2 A 2 99 ? ? ? B . n A 1 3 U 3 100 100 U URI B . n A 1 4 G 4 101 101 G GUA B . n A 1 5 G 5 102 102 G GUA B . n A 1 6 C 6 103 103 C CYT B . n A 1 7 C 7 104 104 C CYT B . n A 1 8 G 8 105 105 G GUA B . n A 1 9 G 9 106 106 G GUA B . n A 1 10 C 10 107 107 C CYT B . n A 1 11 A 11 108 108 A ADE B . n A 1 12 U 12 109 109 U URI B . n A 1 13 G 13 110 110 G GUA B . n A 1 14 G 14 111 111 G GUA B . n A 1 15 U 15 112 112 U URI B . n A 1 16 C 16 113 113 C CYT B . n A 1 17 C 17 114 114 C CYT B . n A 1 18 C 18 115 115 C CYT B . n A 1 19 A 19 116 116 A ADE B . n A 1 20 G 20 117 117 G GUA B . n A 1 21 C 21 118 118 C CYT B . n A 1 22 C 22 119 119 C CYT B . n A 1 23 U 23 120 120 U URI B . n A 1 24 C 24 121 121 C CYT B . n A 1 25 C 25 122 122 C CYT B . n A 1 26 U 26 123 123 U URI B . n A 1 27 C 27 124 124 C CYT B . n A 1 28 G 28 125 125 G GUA B . n A 1 29 C 29 126 126 C CYT B . n A 1 30 U 30 127 127 U URI B . n A 1 31 G 31 128 128 G GUA B . n A 1 32 G 32 129 129 G GUA B . n A 1 33 C 33 130 130 C CYT B . n A 1 34 G 34 131 131 G GUA B . n A 1 35 C 35 132 132 C CYT B . n A 1 36 C 36 133 133 C CYT B . n A 1 37 G 37 134 134 G GUA B . n A 1 38 G 38 135 135 G GUA B . n A 1 39 C 39 136 136 C CYT B . n A 1 40 U 40 137 137 U URI B . n A 1 41 G 41 138 138 G GUA B . n A 1 42 G 42 139 139 G GUA B . n A 1 43 G 43 140 140 G GUA B . n A 1 44 C 44 141 141 C CYT B . n A 1 45 A 45 142 142 A ADE B . n A 1 46 A 46 143 143 A ADE B . n A 1 47 C 47 144 144 C CYT B . n A 1 48 A 48 145 145 A ADE B . n A 1 49 C 49 146 146 C CYT B . n A 1 50 C 50 147 147 C CYT B . n A 1 51 A 51 148 148 A ADE B . n A 1 52 U 52 149 149 U URI B . n A 1 53 U 53 150 150 U URI B . n A 1 54 G 54 151 151 G GUA B . n A 1 55 C 55 152 152 C CYT B . n A 1 56 A 56 153 153 A ADE B . n A 1 57 C 57 154 154 C CYT B . n A 1 58 U 58 155 155 U URI B . n A 1 59 C 59 156 156 C CYT B . n A 1 60 C 60 157 157 C CYT B . n A 1 61 G 61 158 158 G GUA B . n A 1 62 G 62 159 159 G GUA B . n A 1 63 U 63 160 160 U URI B . n A 1 64 G 64 161 161 G GUA B . n A 1 65 G 65 162 162 G GUA B . n A 1 66 U 66 163 163 U URI B . n A 1 67 G 67 164 164 G GUA B . n A 1 68 A 68 165 165 A ADE B . n A 1 69 A 69 166 166 A ADE B . n A 1 70 U 70 167 167 U URI B . n A 1 71 G 71 168 168 G GUA B . n A 1 72 G 72 169 169 G GUA B . n A 1 73 G 73 170 170 G GUA B . n A 1 74 A 74 171 171 A ADE B . n A 1 75 C 75 172 172 C CYT B . n A 1 76 U 76 173 ? ? ? B . n B 2 1 MET 1 1 ? ? ? A . n B 2 2 ALA 2 2 ? ? ? A . n B 2 3 VAL 3 3 ? ? ? A . n B 2 4 PRO 4 4 4 PRO PRO A . n B 2 5 GLU 5 5 5 GLU ALA A . n B 2 6 THR 6 6 6 THR THR A . n B 2 7 ARG 7 7 7 ARG ARG A . n B 2 8 PRO 8 8 8 PRO PRO A . n B 2 9 ASN 9 9 9 ASN ASN A . n B 2 10 HIS 10 10 10 HIS HIS A . n B 2 11 THR 11 11 11 THR THR A . n B 2 12 ILE 12 12 12 ILE ILE A . n B 2 13 TYR 13 13 13 TYR TYR A . n B 2 14 ILE 14 14 14 ILE ILE A . n B 2 15 ASN 15 15 15 ASN ASN A . n B 2 16 ASN 16 16 16 ASN ASN A . n B 2 17 LEU 17 17 17 LEU LEU A . n B 2 18 ASN 18 18 18 ASN ASN A . n B 2 19 GLU 19 19 19 GLU GLU A . n B 2 20 LYS 20 20 20 LYS ALA A . n B 2 21 ILE 21 21 21 ILE ILE A . n B 2 22 LYS 22 22 22 LYS LYS A . n B 2 23 LYS 23 23 23 LYS LYS A . n B 2 24 ASP 24 24 24 ASP ASP A . n B 2 25 GLU 25 25 25 GLU GLU A . n B 2 26 LEU 26 26 26 LEU LEU A . n B 2 27 LYS 27 27 27 LYS LYS A . n B 2 28 LYS 28 28 28 LYS LYS A . n B 2 29 SER 29 29 29 SER SER A . n B 2 30 LEU 30 30 30 LEU LEU A . n B 2 31 HIS 31 31 31 HIS HIS A . n B 2 32 ALA 32 32 32 ALA ALA A . n B 2 33 ILE 33 33 33 ILE ILE A . n B 2 34 PHE 34 34 34 PHE PHE A . n B 2 35 SER 35 35 35 SER SER A . n B 2 36 ARG 36 36 36 ARG ARG A . n B 2 37 PHE 37 37 37 PHE PHE A . n B 2 38 GLY 38 38 38 GLY GLY A . n B 2 39 GLN 39 39 39 GLN GLN A . n B 2 40 ILE 40 40 40 ILE ILE A . n B 2 41 LEU 41 41 41 LEU LEU A . n B 2 42 ASP 42 42 42 ASP ASP A . n B 2 43 ILE 43 43 43 ILE ILE A . n B 2 44 LEU 44 44 44 LEU LEU A . n B 2 45 VAL 45 45 45 VAL VAL A . n B 2 46 SER 46 46 46 SER SER A . n B 2 47 ARG 47 47 47 ARG ARG A . n B 2 48 SER 48 48 48 SER SER A . n B 2 49 LEU 49 49 49 LEU LEU A . n B 2 50 LYS 50 50 50 LYS LYS A . n B 2 51 MET 51 51 51 MET MET A . n B 2 52 ARG 52 52 52 ARG ARG A . n B 2 53 GLY 53 53 53 GLY GLY A . n B 2 54 GLN 54 54 54 GLN GLN A . n B 2 55 ALA 55 55 55 ALA ALA A . n B 2 56 PHE 56 56 56 PHE PHE A . n B 2 57 VAL 57 57 57 VAL VAL A . n B 2 58 ILE 58 58 58 ILE ILE A . n B 2 59 PHE 59 59 59 PHE PHE A . n B 2 60 LYS 60 60 60 LYS LYS A . n B 2 61 GLU 61 61 61 GLU GLU A . n B 2 62 VAL 62 62 62 VAL VAL A . n B 2 63 SER 63 63 63 SER SER A . n B 2 64 SER 64 64 64 SER SER A . n B 2 65 ALA 65 65 65 ALA ALA A . n B 2 66 THR 66 66 66 THR THR A . n B 2 67 ASN 67 67 67 ASN ASN A . n B 2 68 ALA 68 68 68 ALA ALA A . n B 2 69 LEU 69 69 69 LEU LEU A . n B 2 70 ARG 70 70 70 ARG ARG A . n B 2 71 SER 71 71 71 SER SER A . n B 2 72 MET 72 72 72 MET MET A . n B 2 73 GLN 73 73 73 GLN GLN A . n B 2 74 GLY 74 74 74 GLY GLY A . n B 2 75 PHE 75 75 75 PHE PHE A . n B 2 76 PRO 76 76 76 PRO PRO A . n B 2 77 PHE 77 77 77 PHE PHE A . n B 2 78 TYR 78 78 78 TYR TYR A . n B 2 79 ASP 79 79 79 ASP ASP A . n B 2 80 LYS 80 80 80 LYS LYS A . n B 2 81 PRO 81 81 81 PRO PRO A . n B 2 82 MET 82 82 82 MET MET A . n B 2 83 ARG 83 83 83 ARG ARG A . n B 2 84 ILE 84 84 84 ILE ILE A . n B 2 85 GLN 85 85 85 GLN GLN A . n B 2 86 TYR 86 86 86 TYR TYR A . n B 2 87 ALA 87 87 87 ALA ALA A . n B 2 88 LYS 88 88 88 LYS LYS A . n B 2 89 THR 89 89 89 THR THR A . n B 2 90 ASP 90 90 90 ASP ASP A . n B 2 91 SER 91 91 91 SER SER A . n B 2 92 ASP 92 92 92 ASP ASP A . n B 2 93 ILE 93 93 93 ILE ILE A . n B 2 94 ILE 94 94 94 ILE ILE A . n B 2 95 ALA 95 95 95 ALA ALA A . n B 2 96 LYS 96 96 96 LYS LYS A . n B 2 97 MET 97 97 97 MET MET A . n B 2 98 LYS 98 98 98 LYS ALA A . n B 2 99 GLY 99 99 ? ? ? A . n B 2 100 THR 100 100 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BA 1 201 201 BA BA2 B . D 3 BA 1 202 202 BA BA2 B . E 4 HOH 1 17 17 HOH HOH B . E 4 HOH 2 18 18 HOH HOH B . E 4 HOH 3 19 19 HOH HOH B . E 4 HOH 4 20 20 HOH HOH B . F 4 HOH 1 101 1 HOH HOH A . F 4 HOH 2 102 2 HOH HOH A . F 4 HOH 3 103 3 HOH HOH A . F 4 HOH 4 104 4 HOH HOH A . F 4 HOH 5 105 5 HOH HOH A . F 4 HOH 6 106 6 HOH HOH A . F 4 HOH 7 107 7 HOH HOH A . F 4 HOH 8 108 8 HOH HOH A . F 4 HOH 9 109 9 HOH HOH A . F 4 HOH 10 110 10 HOH HOH A . F 4 HOH 11 111 11 HOH HOH A . F 4 HOH 12 112 12 HOH HOH A . F 4 HOH 13 113 13 HOH HOH A . F 4 HOH 14 114 14 HOH HOH A . F 4 HOH 15 115 15 HOH HOH A . F 4 HOH 16 116 16 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B U 100 ? P ? A U 3 P 2 1 Y 1 B U 100 ? OP1 ? A U 3 OP1 3 1 Y 1 B U 100 ? OP2 ? A U 3 OP2 4 1 Y 1 A GLU 5 ? CG ? B GLU 5 CG 5 1 Y 1 A GLU 5 ? CD ? B GLU 5 CD 6 1 Y 1 A GLU 5 ? OE1 ? B GLU 5 OE1 7 1 Y 1 A GLU 5 ? OE2 ? B GLU 5 OE2 8 1 Y 1 A LYS 20 ? CG ? B LYS 20 CG 9 1 Y 1 A LYS 20 ? CD ? B LYS 20 CD 10 1 Y 1 A LYS 20 ? CE ? B LYS 20 CE 11 1 Y 1 A LYS 20 ? NZ ? B LYS 20 NZ 12 1 Y 1 A LYS 98 ? CG ? B LYS 98 CG 13 1 Y 1 A LYS 98 ? CD ? B LYS 98 CD 14 1 Y 1 A LYS 98 ? CE ? B LYS 98 CE 15 1 Y 1 A LYS 98 ? NZ ? B LYS 98 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1VBZ _cell.length_a 108.630 _cell.length_b 108.630 _cell.length_c 190.072 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VBZ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 1VBZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.30 _exptl_crystal.density_percent_sol 62.43 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'BaCl2, NaCl, MPD, Sodium Cacodylate, Spermine-HCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 BaCl2 ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 MPD ? ? ? 1 4 1 'Sodium Cacodylate' ? ? ? 1 5 1 Spermine-HCl ? ? ? 1 6 2 BaCl2 ? ? ? 1 7 2 NaCl ? ? ? 1 8 2 MPD ? ? ? 1 9 2 'Sodium Cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-02-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1000 # _reflns.entry_id 1VBZ _reflns.observed_criterion_sigma_I 2.8 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 35.4 _reflns.d_resolution_high 2.8 _reflns.number_obs 9569 _reflns.number_all 10911 _reflns.percent_possible_obs 87.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 39.2 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.98 _reflns_shell.percent_possible_all 73.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1VBZ _refine.ls_number_reflns_obs 9569 _refine.ls_number_reflns_all 10911 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 360345.62 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.43 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 87.8 _refine.ls_R_factor_obs 0.253 _refine.ls_R_factor_all 0.255 _refine.ls_R_factor_R_work 0.253 _refine.ls_R_factor_R_free 0.268 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.9 _refine.ls_number_reflns_R_free 563 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 68.4 _refine.aniso_B[1][1] -6.74 _refine.aniso_B[2][2] -6.74 _refine.aniso_B[3][3] 13.48 _refine.aniso_B[1][2] -0.10 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.313212 _refine.solvent_model_param_bsol 41.1075 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VBZ _refine_analyze.Luzzati_coordinate_error_obs 0.42 _refine_analyze.Luzzati_sigma_a_obs 0.60 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.45 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 762 _refine_hist.pdbx_number_atoms_nucleic_acid 1552 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 2336 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 33.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 28.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.44 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.26 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.50 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.49 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.34 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1613 _refine_ls_shell.R_factor_R_work 0.382 _refine_ls_shell.percent_reflns_obs 90.0 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA-MULTI-ENDO.PARAM ? 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 4 ION.PARAM ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1VBZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VBZ _struct.title 'Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VBZ _struct_keywords.pdbx_keywords TRANSLATION/RNA _struct_keywords.text 'HDV, ribozyme, RNA, U1A, precursor, TRANSLATION-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SNRPA_HUMAN P09012 2 ;MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; 1 ? 2 PDB 1VBZ 1VBZ 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VBZ A 1 ? 100 ? P09012 1 ? 100 ? 1 100 2 2 1VBZ B 1 ? 76 ? 1VBZ 98 ? 173 ? 98 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VBZ HIS A 31 ? UNP P09012 TYR 31 'engineered mutation' 31 1 1 1VBZ ARG A 36 ? UNP P09012 GLN 36 'engineered mutation' 36 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS B 22 ? SER B 35 ? LYS A 22 SER A 35 1 ? 14 HELX_P HELX_P2 2 ARG B 36 ? GLY B 38 ? ARG A 36 GLY A 38 5 ? 3 HELX_P HELX_P3 3 GLU B 61 ? GLN B 73 ? GLU A 61 GLN A 73 1 ? 13 HELX_P HELX_P4 4 SER B 91 ? LYS B 96 ? SER A 91 LYS A 96 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 4 OP2 ? ? ? 1_555 C BA . BA ? ? B G 101 B BA 201 1_555 ? ? ? ? ? ? ? 3.478 ? ? metalc2 metalc ? ? A U 23 O2 ? ? ? 1_555 C BA . BA ? ? B U 120 B BA 201 1_555 ? ? ? ? ? ? ? 3.029 ? ? metalc3 metalc ? ? A C 44 "O2'" ? ? ? 1_555 D BA . BA ? ? B C 141 B BA 202 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc4 metalc ? ? A U 66 O4 ? ? ? 1_555 C BA . BA ? ? B U 163 B BA 201 1_555 ? ? ? ? ? ? ? 2.787 ? ? hydrog1 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 40 O2 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 40 N3 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 39 N3 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 39 O2 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 39 N4 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 5 N1 ? ? ? 1_555 A U 40 O2 ? ? B G 102 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A G 5 O6 ? ? ? 1_555 A U 40 N3 ? ? B G 102 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 38 N1 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 38 O6 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 38 N2 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 37 N1 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 37 O6 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 37 N2 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 36 N3 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 36 O2 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 36 N4 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 35 N3 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 35 O2 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 35 N4 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 34 N1 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 34 O6 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 34 N2 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 75 N3 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 74 N1 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 74 N6 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 73 N1 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 73 O6 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 73 N2 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 72 N1 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 72 O6 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 72 N2 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 71 N1 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 71 O6 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 71 N2 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 70 N3 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 70 O4 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 33 N3 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 33 O2 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 33 N4 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 32 N1 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 32 O6 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 32 N2 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 42 N1 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 42 O6 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 42 N2 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 24 O2 ? ? ? 1_555 A A 45 N6 ? ? B C 121 B A 142 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog50 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 41 N1 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 41 O6 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 41 N2 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 N2 ? ? ? 1_555 A A 69 N3 ? ? B G 129 B A 166 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog54 hydrog ? ? A G 43 N3 ? ? ? 1_555 A A 45 N6 ? ? B G 140 B A 142 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog55 hydrog ? ? A G 43 N2 ? ? ? 1_555 A G 65 O6 ? ? B G 140 B G 162 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog56 hydrog ? ? A C 44 O2 ? ? ? 1_555 A C 47 N4 ? ? B C 141 B C 144 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog57 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 141 B G 161 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog58 hydrog ? ? A A 46 N1 ? ? ? 1_555 A G 65 N1 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog59 hydrog ? ? A A 46 N6 ? ? ? 1_555 A G 65 O6 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog60 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 64 N1 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 64 N2 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 48 N1 ? ? ? 1_555 A U 63 N3 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 48 N6 ? ? ? 1_555 A U 63 O4 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 62 N1 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 62 O6 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 62 N2 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 61 N1 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 61 O6 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 61 N2 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 58 O2 ? ? ? 1_555 A C 59 N4 ? ? B U 155 B C 156 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 4 ? B G 101 ? 1_555 BA ? C BA . ? B BA 201 ? 1_555 O2 ? A U 23 ? B U 120 ? 1_555 118.4 ? 2 OP2 ? A G 4 ? B G 101 ? 1_555 BA ? C BA . ? B BA 201 ? 1_555 O4 ? A U 66 ? B U 163 ? 1_555 50.6 ? 3 O2 ? A U 23 ? B U 120 ? 1_555 BA ? C BA . ? B BA 201 ? 1_555 O4 ? A U 66 ? B U 163 ? 1_555 67.7 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE B 40 ? VAL B 45 ? ILE A 40 VAL A 45 A 2 GLN B 54 ? PHE B 59 ? GLN A 54 PHE A 59 A 3 THR B 11 ? ASN B 15 ? THR A 11 ASN A 15 A 4 ARG B 83 ? TYR B 86 ? ARG A 83 TYR A 86 B 1 PRO B 76 ? PHE B 77 ? PRO A 76 PHE A 77 B 2 LYS B 80 ? PRO B 81 ? LYS A 80 PRO A 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP B 42 ? N ASP A 42 O ILE B 58 ? O ILE A 58 A 2 3 O ALA B 55 ? O ALA A 55 N ILE B 14 ? N ILE A 14 A 3 4 N TYR B 13 ? N TYR A 13 O GLN B 85 ? O GLN A 85 B 1 2 N PHE B 77 ? N PHE A 77 O LYS B 80 ? O LYS A 80 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B BA 201 ? 3 'BINDING SITE FOR RESIDUE BA B 201' AC2 Software B BA 202 ? 1 'BINDING SITE FOR RESIDUE BA B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 G A 4 ? G B 101 . ? 1_555 ? 2 AC1 3 U A 23 ? U B 120 . ? 1_555 ? 3 AC1 3 U A 66 ? U B 163 . ? 1_555 ? 4 AC2 1 C A 44 ? C B 141 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N3 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 U _pdbx_validate_close_contact.auth_seq_id_1 120 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O6 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 G _pdbx_validate_close_contact.auth_seq_id_2 125 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 19 ? ? 1_555 O B HOH 19 ? ? 18_655 1.06 2 1 NH1 A ARG 7 ? ? 1_555 O A HOH 115 ? ? 2_655 2.10 3 1 CZ A ARG 7 ? ? 1_555 O A HOH 115 ? ? 2_655 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 152 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 152 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 152 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.11 _pdbx_validate_rmsd_angle.angle_target_value 113.70 _pdbx_validate_rmsd_angle.angle_deviation 14.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 5 ? ? -47.37 173.43 2 1 ASN A 16 ? ? 70.23 31.16 3 1 ASP A 42 ? ? 175.46 162.75 4 1 LYS A 96 ? ? -54.34 22.55 5 1 MET A 97 ? ? -155.36 -82.06 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 111 ? F HOH . 2 1 A HOH 112 ? F HOH . 3 1 A HOH 116 ? F HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B G 98 ? A G 1 2 1 Y 1 B A 99 ? A A 2 3 1 Y 1 B U 173 ? A U 76 4 1 Y 1 A MET 1 ? B MET 1 5 1 Y 1 A ALA 2 ? B ALA 2 6 1 Y 1 A VAL 3 ? B VAL 3 7 1 Y 1 A GLY 99 ? B GLY 99 8 1 Y 1 A THR 100 ? B THR 100 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 BA BA BA N N 111 C OP3 O N N 112 C P P N N 113 C OP1 O N N 114 C OP2 O N N 115 C "O5'" O N N 116 C "C5'" C N N 117 C "C4'" C N R 118 C "O4'" O N N 119 C "C3'" C N S 120 C "O3'" O N N 121 C "C2'" C N R 122 C "O2'" O N N 123 C "C1'" C N R 124 C N1 N N N 125 C C2 C N N 126 C O2 O N N 127 C N3 N N N 128 C C4 C N N 129 C N4 N N N 130 C C5 C N N 131 C C6 C N N 132 C HOP3 H N N 133 C HOP2 H N N 134 C "H5'" H N N 135 C "H5''" H N N 136 C "H4'" H N N 137 C "H3'" H N N 138 C "HO3'" H N N 139 C "H2'" H N N 140 C "HO2'" H N N 141 C "H1'" H N N 142 C H41 H N N 143 C H42 H N N 144 C H5 H N N 145 C H6 H N N 146 G OP3 O N N 147 G P P N N 148 G OP1 O N N 149 G OP2 O N N 150 G "O5'" O N N 151 G "C5'" C N N 152 G "C4'" C N R 153 G "O4'" O N N 154 G "C3'" C N S 155 G "O3'" O N N 156 G "C2'" C N R 157 G "O2'" O N N 158 G "C1'" C N R 159 G N9 N Y N 160 G C8 C Y N 161 G N7 N Y N 162 G C5 C Y N 163 G C6 C N N 164 G O6 O N N 165 G N1 N N N 166 G C2 C N N 167 G N2 N N N 168 G N3 N N N 169 G C4 C Y N 170 G HOP3 H N N 171 G HOP2 H N N 172 G "H5'" H N N 173 G "H5''" H N N 174 G "H4'" H N N 175 G "H3'" H N N 176 G "HO3'" H N N 177 G "H2'" H N N 178 G "HO2'" H N N 179 G "H1'" H N N 180 G H8 H N N 181 G H1 H N N 182 G H21 H N N 183 G H22 H N N 184 GLN N N N N 185 GLN CA C N S 186 GLN C C N N 187 GLN O O N N 188 GLN CB C N N 189 GLN CG C N N 190 GLN CD C N N 191 GLN OE1 O N N 192 GLN NE2 N N N 193 GLN OXT O N N 194 GLN H H N N 195 GLN H2 H N N 196 GLN HA H N N 197 GLN HB2 H N N 198 GLN HB3 H N N 199 GLN HG2 H N N 200 GLN HG3 H N N 201 GLN HE21 H N N 202 GLN HE22 H N N 203 GLN HXT H N N 204 GLU N N N N 205 GLU CA C N S 206 GLU C C N N 207 GLU O O N N 208 GLU CB C N N 209 GLU CG C N N 210 GLU CD C N N 211 GLU OE1 O N N 212 GLU OE2 O N N 213 GLU OXT O N N 214 GLU H H N N 215 GLU H2 H N N 216 GLU HA H N N 217 GLU HB2 H N N 218 GLU HB3 H N N 219 GLU HG2 H N N 220 GLU HG3 H N N 221 GLU HE2 H N N 222 GLU HXT H N N 223 GLY N N N N 224 GLY CA C N N 225 GLY C C N N 226 GLY O O N N 227 GLY OXT O N N 228 GLY H H N N 229 GLY H2 H N N 230 GLY HA2 H N N 231 GLY HA3 H N N 232 GLY HXT H N N 233 HIS N N N N 234 HIS CA C N S 235 HIS C C N N 236 HIS O O N N 237 HIS CB C N N 238 HIS CG C Y N 239 HIS ND1 N Y N 240 HIS CD2 C Y N 241 HIS CE1 C Y N 242 HIS NE2 N Y N 243 HIS OXT O N N 244 HIS H H N N 245 HIS H2 H N N 246 HIS HA H N N 247 HIS HB2 H N N 248 HIS HB3 H N N 249 HIS HD1 H N N 250 HIS HD2 H N N 251 HIS HE1 H N N 252 HIS HE2 H N N 253 HIS HXT H N N 254 HOH O O N N 255 HOH H1 H N N 256 HOH H2 H N N 257 ILE N N N N 258 ILE CA C N S 259 ILE C C N N 260 ILE O O N N 261 ILE CB C N S 262 ILE CG1 C N N 263 ILE CG2 C N N 264 ILE CD1 C N N 265 ILE OXT O N N 266 ILE H H N N 267 ILE H2 H N N 268 ILE HA H N N 269 ILE HB H N N 270 ILE HG12 H N N 271 ILE HG13 H N N 272 ILE HG21 H N N 273 ILE HG22 H N N 274 ILE HG23 H N N 275 ILE HD11 H N N 276 ILE HD12 H N N 277 ILE HD13 H N N 278 ILE HXT H N N 279 LEU N N N N 280 LEU CA C N S 281 LEU C C N N 282 LEU O O N N 283 LEU CB C N N 284 LEU CG C N N 285 LEU CD1 C N N 286 LEU CD2 C N N 287 LEU OXT O N N 288 LEU H H N N 289 LEU H2 H N N 290 LEU HA H N N 291 LEU HB2 H N N 292 LEU HB3 H N N 293 LEU HG H N N 294 LEU HD11 H N N 295 LEU HD12 H N N 296 LEU HD13 H N N 297 LEU HD21 H N N 298 LEU HD22 H N N 299 LEU HD23 H N N 300 LEU HXT H N N 301 LYS N N N N 302 LYS CA C N S 303 LYS C C N N 304 LYS O O N N 305 LYS CB C N N 306 LYS CG C N N 307 LYS CD C N N 308 LYS CE C N N 309 LYS NZ N N N 310 LYS OXT O N N 311 LYS H H N N 312 LYS H2 H N N 313 LYS HA H N N 314 LYS HB2 H N N 315 LYS HB3 H N N 316 LYS HG2 H N N 317 LYS HG3 H N N 318 LYS HD2 H N N 319 LYS HD3 H N N 320 LYS HE2 H N N 321 LYS HE3 H N N 322 LYS HZ1 H N N 323 LYS HZ2 H N N 324 LYS HZ3 H N N 325 LYS HXT H N N 326 MET N N N N 327 MET CA C N S 328 MET C C N N 329 MET O O N N 330 MET CB C N N 331 MET CG C N N 332 MET SD S N N 333 MET CE C N N 334 MET OXT O N N 335 MET H H N N 336 MET H2 H N N 337 MET HA H N N 338 MET HB2 H N N 339 MET HB3 H N N 340 MET HG2 H N N 341 MET HG3 H N N 342 MET HE1 H N N 343 MET HE2 H N N 344 MET HE3 H N N 345 MET HXT H N N 346 PHE N N N N 347 PHE CA C N S 348 PHE C C N N 349 PHE O O N N 350 PHE CB C N N 351 PHE CG C Y N 352 PHE CD1 C Y N 353 PHE CD2 C Y N 354 PHE CE1 C Y N 355 PHE CE2 C Y N 356 PHE CZ C Y N 357 PHE OXT O N N 358 PHE H H N N 359 PHE H2 H N N 360 PHE HA H N N 361 PHE HB2 H N N 362 PHE HB3 H N N 363 PHE HD1 H N N 364 PHE HD2 H N N 365 PHE HE1 H N N 366 PHE HE2 H N N 367 PHE HZ H N N 368 PHE HXT H N N 369 PRO N N N N 370 PRO CA C N S 371 PRO C C N N 372 PRO O O N N 373 PRO CB C N N 374 PRO CG C N N 375 PRO CD C N N 376 PRO OXT O N N 377 PRO H H N N 378 PRO HA H N N 379 PRO HB2 H N N 380 PRO HB3 H N N 381 PRO HG2 H N N 382 PRO HG3 H N N 383 PRO HD2 H N N 384 PRO HD3 H N N 385 PRO HXT H N N 386 SER N N N N 387 SER CA C N S 388 SER C C N N 389 SER O O N N 390 SER CB C N N 391 SER OG O N N 392 SER OXT O N N 393 SER H H N N 394 SER H2 H N N 395 SER HA H N N 396 SER HB2 H N N 397 SER HB3 H N N 398 SER HG H N N 399 SER HXT H N N 400 THR N N N N 401 THR CA C N S 402 THR C C N N 403 THR O O N N 404 THR CB C N R 405 THR OG1 O N N 406 THR CG2 C N N 407 THR OXT O N N 408 THR H H N N 409 THR H2 H N N 410 THR HA H N N 411 THR HB H N N 412 THR HG1 H N N 413 THR HG21 H N N 414 THR HG22 H N N 415 THR HG23 H N N 416 THR HXT H N N 417 TYR N N N N 418 TYR CA C N S 419 TYR C C N N 420 TYR O O N N 421 TYR CB C N N 422 TYR CG C Y N 423 TYR CD1 C Y N 424 TYR CD2 C Y N 425 TYR CE1 C Y N 426 TYR CE2 C Y N 427 TYR CZ C Y N 428 TYR OH O N N 429 TYR OXT O N N 430 TYR H H N N 431 TYR H2 H N N 432 TYR HA H N N 433 TYR HB2 H N N 434 TYR HB3 H N N 435 TYR HD1 H N N 436 TYR HD2 H N N 437 TYR HE1 H N N 438 TYR HE2 H N N 439 TYR HH H N N 440 TYR HXT H N N 441 U OP3 O N N 442 U P P N N 443 U OP1 O N N 444 U OP2 O N N 445 U "O5'" O N N 446 U "C5'" C N N 447 U "C4'" C N R 448 U "O4'" O N N 449 U "C3'" C N S 450 U "O3'" O N N 451 U "C2'" C N R 452 U "O2'" O N N 453 U "C1'" C N R 454 U N1 N N N 455 U C2 C N N 456 U O2 O N N 457 U N3 N N N 458 U C4 C N N 459 U O4 O N N 460 U C5 C N N 461 U C6 C N N 462 U HOP3 H N N 463 U HOP2 H N N 464 U "H5'" H N N 465 U "H5''" H N N 466 U "H4'" H N N 467 U "H3'" H N N 468 U "HO3'" H N N 469 U "H2'" H N N 470 U "HO2'" H N N 471 U "H1'" H N N 472 U H3 H N N 473 U H5 H N N 474 U H6 H N N 475 VAL N N N N 476 VAL CA C N S 477 VAL C C N N 478 VAL O O N N 479 VAL CB C N N 480 VAL CG1 C N N 481 VAL CG2 C N N 482 VAL OXT O N N 483 VAL H H N N 484 VAL H2 H N N 485 VAL HA H N N 486 VAL HB H N N 487 VAL HG11 H N N 488 VAL HG12 H N N 489 VAL HG13 H N N 490 VAL HG21 H N N 491 VAL HG22 H N N 492 VAL HG23 H N N 493 VAL HXT H N N 494 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 HOH O H1 sing N N 252 HOH O H2 sing N N 253 ILE N CA sing N N 254 ILE N H sing N N 255 ILE N H2 sing N N 256 ILE CA C sing N N 257 ILE CA CB sing N N 258 ILE CA HA sing N N 259 ILE C O doub N N 260 ILE C OXT sing N N 261 ILE CB CG1 sing N N 262 ILE CB CG2 sing N N 263 ILE CB HB sing N N 264 ILE CG1 CD1 sing N N 265 ILE CG1 HG12 sing N N 266 ILE CG1 HG13 sing N N 267 ILE CG2 HG21 sing N N 268 ILE CG2 HG22 sing N N 269 ILE CG2 HG23 sing N N 270 ILE CD1 HD11 sing N N 271 ILE CD1 HD12 sing N N 272 ILE CD1 HD13 sing N N 273 ILE OXT HXT sing N N 274 LEU N CA sing N N 275 LEU N H sing N N 276 LEU N H2 sing N N 277 LEU CA C sing N N 278 LEU CA CB sing N N 279 LEU CA HA sing N N 280 LEU C O doub N N 281 LEU C OXT sing N N 282 LEU CB CG sing N N 283 LEU CB HB2 sing N N 284 LEU CB HB3 sing N N 285 LEU CG CD1 sing N N 286 LEU CG CD2 sing N N 287 LEU CG HG sing N N 288 LEU CD1 HD11 sing N N 289 LEU CD1 HD12 sing N N 290 LEU CD1 HD13 sing N N 291 LEU CD2 HD21 sing N N 292 LEU CD2 HD22 sing N N 293 LEU CD2 HD23 sing N N 294 LEU OXT HXT sing N N 295 LYS N CA sing N N 296 LYS N H sing N N 297 LYS N H2 sing N N 298 LYS CA C sing N N 299 LYS CA CB sing N N 300 LYS CA HA sing N N 301 LYS C O doub N N 302 LYS C OXT sing N N 303 LYS CB CG sing N N 304 LYS CB HB2 sing N N 305 LYS CB HB3 sing N N 306 LYS CG CD sing N N 307 LYS CG HG2 sing N N 308 LYS CG HG3 sing N N 309 LYS CD CE sing N N 310 LYS CD HD2 sing N N 311 LYS CD HD3 sing N N 312 LYS CE NZ sing N N 313 LYS CE HE2 sing N N 314 LYS CE HE3 sing N N 315 LYS NZ HZ1 sing N N 316 LYS NZ HZ2 sing N N 317 LYS NZ HZ3 sing N N 318 LYS OXT HXT sing N N 319 MET N CA sing N N 320 MET N H sing N N 321 MET N H2 sing N N 322 MET CA C sing N N 323 MET CA CB sing N N 324 MET CA HA sing N N 325 MET C O doub N N 326 MET C OXT sing N N 327 MET CB CG sing N N 328 MET CB HB2 sing N N 329 MET CB HB3 sing N N 330 MET CG SD sing N N 331 MET CG HG2 sing N N 332 MET CG HG3 sing N N 333 MET SD CE sing N N 334 MET CE HE1 sing N N 335 MET CE HE2 sing N N 336 MET CE HE3 sing N N 337 MET OXT HXT sing N N 338 PHE N CA sing N N 339 PHE N H sing N N 340 PHE N H2 sing N N 341 PHE CA C sing N N 342 PHE CA CB sing N N 343 PHE CA HA sing N N 344 PHE C O doub N N 345 PHE C OXT sing N N 346 PHE CB CG sing N N 347 PHE CB HB2 sing N N 348 PHE CB HB3 sing N N 349 PHE CG CD1 doub Y N 350 PHE CG CD2 sing Y N 351 PHE CD1 CE1 sing Y N 352 PHE CD1 HD1 sing N N 353 PHE CD2 CE2 doub Y N 354 PHE CD2 HD2 sing N N 355 PHE CE1 CZ doub Y N 356 PHE CE1 HE1 sing N N 357 PHE CE2 CZ sing Y N 358 PHE CE2 HE2 sing N N 359 PHE CZ HZ sing N N 360 PHE OXT HXT sing N N 361 PRO N CA sing N N 362 PRO N CD sing N N 363 PRO N H sing N N 364 PRO CA C sing N N 365 PRO CA CB sing N N 366 PRO CA HA sing N N 367 PRO C O doub N N 368 PRO C OXT sing N N 369 PRO CB CG sing N N 370 PRO CB HB2 sing N N 371 PRO CB HB3 sing N N 372 PRO CG CD sing N N 373 PRO CG HG2 sing N N 374 PRO CG HG3 sing N N 375 PRO CD HD2 sing N N 376 PRO CD HD3 sing N N 377 PRO OXT HXT sing N N 378 SER N CA sing N N 379 SER N H sing N N 380 SER N H2 sing N N 381 SER CA C sing N N 382 SER CA CB sing N N 383 SER CA HA sing N N 384 SER C O doub N N 385 SER C OXT sing N N 386 SER CB OG sing N N 387 SER CB HB2 sing N N 388 SER CB HB3 sing N N 389 SER OG HG sing N N 390 SER OXT HXT sing N N 391 THR N CA sing N N 392 THR N H sing N N 393 THR N H2 sing N N 394 THR CA C sing N N 395 THR CA CB sing N N 396 THR CA HA sing N N 397 THR C O doub N N 398 THR C OXT sing N N 399 THR CB OG1 sing N N 400 THR CB CG2 sing N N 401 THR CB HB sing N N 402 THR OG1 HG1 sing N N 403 THR CG2 HG21 sing N N 404 THR CG2 HG22 sing N N 405 THR CG2 HG23 sing N N 406 THR OXT HXT sing N N 407 TYR N CA sing N N 408 TYR N H sing N N 409 TYR N H2 sing N N 410 TYR CA C sing N N 411 TYR CA CB sing N N 412 TYR CA HA sing N N 413 TYR C O doub N N 414 TYR C OXT sing N N 415 TYR CB CG sing N N 416 TYR CB HB2 sing N N 417 TYR CB HB3 sing N N 418 TYR CG CD1 doub Y N 419 TYR CG CD2 sing Y N 420 TYR CD1 CE1 sing Y N 421 TYR CD1 HD1 sing N N 422 TYR CD2 CE2 doub Y N 423 TYR CD2 HD2 sing N N 424 TYR CE1 CZ doub Y N 425 TYR CE1 HE1 sing N N 426 TYR CE2 CZ sing Y N 427 TYR CE2 HE2 sing N N 428 TYR CZ OH sing N N 429 TYR OH HH sing N N 430 TYR OXT HXT sing N N 431 U OP3 P sing N N 432 U OP3 HOP3 sing N N 433 U P OP1 doub N N 434 U P OP2 sing N N 435 U P "O5'" sing N N 436 U OP2 HOP2 sing N N 437 U "O5'" "C5'" sing N N 438 U "C5'" "C4'" sing N N 439 U "C5'" "H5'" sing N N 440 U "C5'" "H5''" sing N N 441 U "C4'" "O4'" sing N N 442 U "C4'" "C3'" sing N N 443 U "C4'" "H4'" sing N N 444 U "O4'" "C1'" sing N N 445 U "C3'" "O3'" sing N N 446 U "C3'" "C2'" sing N N 447 U "C3'" "H3'" sing N N 448 U "O3'" "HO3'" sing N N 449 U "C2'" "O2'" sing N N 450 U "C2'" "C1'" sing N N 451 U "C2'" "H2'" sing N N 452 U "O2'" "HO2'" sing N N 453 U "C1'" N1 sing N N 454 U "C1'" "H1'" sing N N 455 U N1 C2 sing N N 456 U N1 C6 sing N N 457 U C2 O2 doub N N 458 U C2 N3 sing N N 459 U N3 C4 sing N N 460 U N3 H3 sing N N 461 U C4 O4 doub N N 462 U C4 C5 sing N N 463 U C5 C6 doub N N 464 U C5 H5 sing N N 465 U C6 H6 sing N N 466 VAL N CA sing N N 467 VAL N H sing N N 468 VAL N H2 sing N N 469 VAL CA C sing N N 470 VAL CA CB sing N N 471 VAL CA HA sing N N 472 VAL C O doub N N 473 VAL C OXT sing N N 474 VAL CB CG1 sing N N 475 VAL CB CG2 sing N N 476 VAL CB HB sing N N 477 VAL CG1 HG11 sing N N 478 VAL CG1 HG12 sing N N 479 VAL CG1 HG13 sing N N 480 VAL CG2 HG21 sing N N 481 VAL CG2 HG22 sing N N 482 VAL CG2 HG23 sing N N 483 VAL OXT HXT sing N N 484 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VBZ 'double helix' 1VBZ 'a-form double helix' 1VBZ 'bulge loop' 1VBZ 'mismatched base pair' 1VBZ 'internal loop' 1VBZ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 34 1_555 A C 10 1_555 -0.730 -0.253 -0.270 -11.429 -1.372 -2.921 1 B_G131:C107_B B 131 ? B 107 ? 19 1 1 A C 35 1_555 A G 9 1_555 0.956 -0.498 0.328 -14.798 -11.054 5.612 2 B_C132:G106_B B 132 ? B 106 ? 19 1 1 A C 36 1_555 A G 8 1_555 0.326 0.066 0.695 -5.844 -2.742 10.182 3 B_C133:G105_B B 133 ? B 105 ? 19 1 1 A G 37 1_555 A C 7 1_555 -0.666 -0.202 -0.699 -12.861 -2.534 1.513 4 B_G134:C104_B B 134 ? B 104 ? 19 1 1 A G 38 1_555 A C 6 1_555 0.083 -0.101 -1.201 -9.301 2.011 7.003 5 B_G135:C103_B B 135 ? B 103 ? 19 1 1 A C 39 1_555 A G 5 1_555 0.199 -0.275 -1.216 10.372 -5.391 11.917 6 B_C136:G102_B B 136 ? B 102 ? 19 1 1 A U 40 1_555 A G 4 1_555 1.637 -0.511 -0.736 9.049 -3.467 3.030 7 B_U137:G101_B B 137 ? B 101 ? 28 1 1 A G 41 1_555 A C 25 1_555 0.089 -0.356 -0.277 -5.982 -10.668 -0.278 8 B_G138:C122_B B 138 ? B 122 ? 19 1 1 A G 42 1_555 A C 24 1_555 0.055 -0.190 0.039 -20.133 -23.851 -1.720 9 B_G139:C121_B B 139 ? B 121 ? 19 1 1 A A 46 1_555 A G 65 1_555 -0.339 1.427 -0.237 3.218 -16.404 -3.701 10 B_A143:G162_B B 143 ? B 162 ? 8 1 1 A C 47 1_555 A G 64 1_555 0.658 -0.140 0.773 2.425 -17.882 3.653 11 B_C144:G161_B B 144 ? B 161 ? 19 1 1 A A 48 1_555 A U 63 1_555 -0.042 -0.282 0.074 4.264 -11.253 0.046 12 B_A145:U160_B B 145 ? B 160 ? 20 1 1 A C 49 1_555 A G 62 1_555 0.168 -0.101 -0.156 4.928 -13.064 3.645 13 B_C146:G159_B B 146 ? B 159 ? 19 1 1 A C 50 1_555 A G 61 1_555 0.173 -0.203 0.194 -1.773 0.774 -3.041 14 B_C147:G158_B B 147 ? B 158 ? 19 1 1 A G 14 1_555 A C 75 1_555 -0.449 0.225 0.669 -5.493 -12.159 8.940 15 B_G111:C172_B B 111 ? B 172 ? ? 1 1 A U 15 1_555 A A 74 1_555 0.345 -0.454 0.443 4.947 -13.202 -2.526 16 B_U112:A171_B B 112 ? B 171 ? 20 1 1 A C 16 1_555 A G 73 1_555 -0.797 -0.179 0.147 12.370 -12.612 -1.004 17 B_C113:G170_B B 113 ? B 170 ? 19 1 1 A C 17 1_555 A G 72 1_555 -0.047 -0.102 0.098 2.533 -13.019 4.838 18 B_C114:G169_B B 114 ? B 169 ? 19 1 1 A C 18 1_555 A G 71 1_555 -0.094 -0.151 -0.094 4.065 -5.080 -4.203 19 B_C115:G168_B B 115 ? B 168 ? 19 1 1 A A 19 1_555 A U 70 1_555 -0.328 0.022 0.007 1.710 -7.353 8.930 20 B_A116:U167_B B 116 ? B 167 ? 20 1 1 A G 20 1_555 A C 33 1_555 -0.805 -0.204 0.393 2.171 -17.131 8.014 21 B_G117:C130_B B 117 ? B 130 ? 19 1 1 A C 21 1_555 A G 32 1_555 0.095 -0.219 0.485 2.292 -22.683 4.788 22 B_C118:G129_B B 118 ? B 129 ? 19 1 1 A C 22 1_555 A G 31 1_555 0.094 -0.511 0.726 -12.083 -13.522 -9.610 23 B_C119:G128_B B 119 ? B 128 ? 19 1 1 A U 58 1_555 A C 59 1_555 -6.602 0.596 -0.809 7.604 10.903 2.058 24 B_U155:C156_B B 155 ? B 156 ? ? 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 34 1_555 A C 10 1_555 A C 35 1_555 A G 9 1_555 -0.440 -1.691 3.344 -2.000 3.007 38.447 -2.930 0.417 3.225 4.555 3.029 38.609 1 BB_G131C132:G106C107_BB B 131 ? B 107 ? B 132 ? B 106 ? 1 A C 35 1_555 A G 9 1_555 A C 36 1_555 A G 8 1_555 0.428 -2.673 2.736 -1.204 6.382 26.317 -6.897 -1.138 2.022 13.752 2.594 27.093 2 BB_C132C133:G105G106_BB B 132 ? B 106 ? B 133 ? B 105 ? 1 A C 36 1_555 A G 8 1_555 A G 37 1_555 A C 7 1_555 -0.346 -2.189 3.280 8.604 8.333 24.953 -6.374 2.574 2.211 18.020 -18.605 27.638 3 BB_C133G134:C104G105_BB B 133 ? B 105 ? B 134 ? B 104 ? 1 A G 37 1_555 A C 7 1_555 A G 38 1_555 A C 6 1_555 0.000 -1.356 3.579 -1.121 3.634 27.106 -3.828 -0.296 3.369 7.705 2.377 27.367 4 BB_G134G135:C103C104_BB B 134 ? B 104 ? B 135 ? B 103 ? 1 A G 38 1_555 A C 6 1_555 A C 39 1_555 A G 5 1_555 -0.251 -2.029 2.773 -0.604 2.768 26.362 -5.021 0.417 2.555 6.046 1.319 26.511 5 BB_G135C136:G102C103_BB B 135 ? B 103 ? B 136 ? B 102 ? 1 A C 39 1_555 A G 5 1_555 A U 40 1_555 A G 4 1_555 0.726 -1.592 3.361 0.111 9.921 41.448 -3.169 -0.989 2.923 13.781 -0.154 42.568 6 BB_C136U137:G101G102_BB B 136 ? B 102 ? B 137 ? B 101 ? 1 A U 40 1_555 A G 4 1_555 A G 41 1_555 A C 25 1_555 -2.789 -2.672 3.860 -5.241 5.093 7.597 -24.841 4.597 2.880 30.629 31.520 10.538 7 BB_U137G138:C122G101_BB B 137 ? B 101 ? B 138 ? B 122 ? 1 A G 41 1_555 A C 25 1_555 A G 42 1_555 A C 24 1_555 0.025 -1.909 3.698 -2.149 9.197 34.208 -4.562 -0.375 3.090 15.277 3.570 35.450 8 BB_G138G139:C121C122_BB B 138 ? B 122 ? B 139 ? B 121 ? 1 A G 42 1_555 A C 24 1_555 A A 46 1_555 A G 65 1_555 -5.538 -1.980 3.590 31.660 -4.065 85.530 -1.325 4.473 1.947 -2.909 -22.655 90.204 9 BB_G139A143:G162C121_BB B 139 ? B 121 ? B 143 ? B 162 ? 1 A A 46 1_555 A G 65 1_555 A C 47 1_555 A G 64 1_555 0.809 -0.618 3.262 -10.485 7.285 38.936 -1.645 -2.252 2.806 10.588 15.239 40.899 10 BB_A143C144:G161G162_BB B 143 ? B 162 ? B 144 ? B 161 ? 1 A C 47 1_555 A G 64 1_555 A A 48 1_555 A U 63 1_555 -0.238 -1.759 2.964 4.610 8.254 31.041 -4.363 1.103 2.371 14.992 -8.373 32.415 11 BB_C144A145:U160G161_BB B 144 ? B 161 ? B 145 ? B 160 ? 1 A A 48 1_555 A U 63 1_555 A C 49 1_555 A G 62 1_555 0.291 -1.096 3.227 1.146 2.013 33.604 -2.212 -0.320 3.165 3.476 -1.979 33.682 12 BB_A145C146:G159U160_BB B 145 ? B 160 ? B 146 ? B 159 ? 1 A C 49 1_555 A G 62 1_555 A C 50 1_555 A G 61 1_555 -0.177 -1.977 3.411 -2.728 5.797 32.566 -4.430 -0.145 3.029 10.214 4.807 33.174 13 BB_C146C147:G158G159_BB B 146 ? B 159 ? B 147 ? B 158 ? 1 A G 14 1_555 A C 75 1_555 A U 15 1_555 A A 74 1_555 -1.156 -1.494 3.098 -2.873 3.608 31.377 -3.357 1.619 3.003 6.627 5.277 31.706 14 BB_G111U112:A171C172_BB B 111 ? B 172 ? B 112 ? B 171 ? 1 A U 15 1_555 A A 74 1_555 A C 16 1_555 A G 73 1_555 0.858 -1.821 2.786 0.203 -0.374 27.041 -3.813 -1.790 2.817 -0.799 -0.433 27.044 15 BB_U112C113:G170A171_BB B 112 ? B 171 ? B 113 ? B 170 ? 1 A C 16 1_555 A G 73 1_555 A C 17 1_555 A G 72 1_555 0.001 -1.752 3.328 -1.465 7.021 40.371 -3.250 -0.156 2.993 10.077 2.103 40.977 16 BB_C113C114:G169G170_BB B 113 ? B 170 ? B 114 ? B 169 ? 1 A C 17 1_555 A G 72 1_555 A C 18 1_555 A G 71 1_555 -1.016 -1.682 3.243 -0.200 5.563 29.176 -4.389 1.944 2.887 10.919 0.393 29.692 17 BB_C114C115:G168G169_BB B 114 ? B 169 ? B 115 ? B 168 ? 1 A C 18 1_555 A G 71 1_555 A A 19 1_555 A U 70 1_555 0.565 -1.680 3.257 0.238 5.348 23.875 -5.530 -1.263 2.823 12.723 -0.567 24.459 18 BB_C115A116:U167G168_BB B 115 ? B 168 ? B 116 ? B 167 ? 1 A A 19 1_555 A U 70 1_555 A G 20 1_555 A C 33 1_555 1.114 -1.326 3.326 -4.374 2.833 39.586 -2.264 -2.129 3.093 4.161 6.425 39.914 19 BB_A116G117:C130U167_BB B 116 ? B 167 ? B 117 ? B 130 ? 1 A G 20 1_555 A C 33 1_555 A C 21 1_555 A G 32 1_555 0.603 -1.334 3.123 2.575 -0.063 39.575 -1.960 -0.600 3.156 -0.093 -3.797 39.656 20 BB_G117C118:G129C130_BB B 117 ? B 130 ? B 118 ? B 129 ? 1 A C 21 1_555 A G 32 1_555 A C 22 1_555 A G 31 1_555 -0.582 -1.313 3.527 0.095 5.995 36.842 -2.883 0.923 3.279 9.409 -0.149 37.310 21 BB_C118C119:G128G129_BB B 118 ? B 129 ? B 119 ? B 128 ? # _atom_sites.entry_id 1VBZ _atom_sites.fract_transf_matrix[1][1] 0.009206 _atom_sites.fract_transf_matrix[1][2] 0.005315 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010630 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005261 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P S # loop_