data_1VC7 # _entry.id 1VC7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VC7 NDB PR0121 RCSB RCSB006454 WWPDB D_1000006454 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2014-10-29 _pdbx_database_PDB_obs_spr.pdb_id 4PRF _pdbx_database_PDB_obs_spr.replace_pdb_id 1VC7 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DRZ 'cleaved HDV ribozyme' unspecified PDB 1CX0 'cleaved HDV ribozyme' unspecified PDB 1VBX 'the same protein/RNA(C75U) complex in EDTA solution' unspecified PDB 1VBY 'the same protein/RNA(C75U) complex and Mn2+ bound' unspecified PDB 1VBZ 'the same protein/RNA(C75U) complex in Ba2+ solution' unspecified PDB 1VC0 'the same protein/RNA(C75U) complex in Imidazole and Sr2+ solutions' unspecified PDB 1SJF 'the same protein/RNA(C75U) complex in Cobalt Hexammine solution' unspecified PDB 1VC5 'the same protein/RNA(wild type) complex in EDTA solution' unspecified PDB 1VC6 'the same protein/RNA(C75U) complex in Imidazole and Mg2+ solutions' unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1VC7 _pdbx_database_status.recvd_initial_deposition_date 2004-03-05 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ke, A.' 1 'Zhou, K.' 2 'Ding, F.' 3 'Cate, J.H.D.' 4 'Doudna, J.A.' 5 # _citation.id primary _citation.title 'A Conformational Switch controls hepatitis delta virus ribozyme catalysis' _citation.journal_abbrev NATURE _citation.journal_volume 429 _citation.page_first 201 _citation.page_last 205 _citation.year 2004 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15141216 _citation.pdbx_database_id_DOI 10.1038/nature02522 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ke, A.' 1 primary 'Zhou, K.' 2 primary 'Ding, F.' 3 primary 'Cate, J.H.D.' 4 primary 'Doudna, J.A.' 5 # _cell.entry_id 1VC7 _cell.length_a 108.944 _cell.length_b 108.944 _cell.length_c 191.754 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VC7 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Hepatitis Delta virus ribozyme' 24467.521 1 ? C75U ? ? 2 polymer man 'U1 small nuclear ribonucleoprotein A' 11498.472 1 ? Y31H/Q36R 'U1A_RBD(residues 1-100)' ? 3 non-polymer syn 'STRONTIUM ION' 87.620 2 ? ? ? ? 4 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'U1 snRNP protein A, U1A protein, U1-A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGACU GAUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGACU B ? 2 'polypeptide(L)' no no ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 U n 1 4 G n 1 5 G n 1 6 C n 1 7 C n 1 8 G n 1 9 G n 1 10 C n 1 11 A n 1 12 U n 1 13 G n 1 14 G n 1 15 U n 1 16 C n 1 17 C n 1 18 C n 1 19 A n 1 20 G n 1 21 C n 1 22 C n 1 23 U n 1 24 C n 1 25 C n 1 26 U n 1 27 C n 1 28 G n 1 29 C n 1 30 U n 1 31 G n 1 32 G n 1 33 C n 1 34 G n 1 35 C n 1 36 C n 1 37 G n 1 38 G n 1 39 C n 1 40 U n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 A n 1 52 U n 1 53 U n 1 54 G n 1 55 C n 1 56 A n 1 57 C n 1 58 U n 1 59 C n 1 60 C n 1 61 G n 1 62 G n 1 63 U n 1 64 G n 1 65 G n 1 66 U n 1 67 G n 1 68 A n 1 69 A n 1 70 U n 1 71 G n 1 72 G n 1 73 G n 1 74 A n 1 75 C n 1 76 U n 2 1 MET n 2 2 ALA n 2 3 VAL n 2 4 PRO n 2 5 GLU n 2 6 THR n 2 7 ARG n 2 8 PRO n 2 9 ASN n 2 10 HIS n 2 11 THR n 2 12 ILE n 2 13 TYR n 2 14 ILE n 2 15 ASN n 2 16 ASN n 2 17 LEU n 2 18 ASN n 2 19 GLU n 2 20 LYS n 2 21 ILE n 2 22 LYS n 2 23 LYS n 2 24 ASP n 2 25 GLU n 2 26 LEU n 2 27 LYS n 2 28 LYS n 2 29 SER n 2 30 LEU n 2 31 HIS n 2 32 ALA n 2 33 ILE n 2 34 PHE n 2 35 SER n 2 36 ARG n 2 37 PHE n 2 38 GLY n 2 39 GLN n 2 40 ILE n 2 41 LEU n 2 42 ASP n 2 43 ILE n 2 44 LEU n 2 45 VAL n 2 46 SER n 2 47 ARG n 2 48 SER n 2 49 LEU n 2 50 LYS n 2 51 MET n 2 52 ARG n 2 53 GLY n 2 54 GLN n 2 55 ALA n 2 56 PHE n 2 57 VAL n 2 58 ILE n 2 59 PHE n 2 60 LYS n 2 61 GLU n 2 62 VAL n 2 63 SER n 2 64 SER n 2 65 ALA n 2 66 THR n 2 67 ASN n 2 68 ALA n 2 69 LEU n 2 70 ARG n 2 71 SER n 2 72 MET n 2 73 GLN n 2 74 GLY n 2 75 PHE n 2 76 PRO n 2 77 PHE n 2 78 TYR n 2 79 ASP n 2 80 LYS n 2 81 PRO n 2 82 MET n 2 83 ARG n 2 84 ILE n 2 85 GLN n 2 86 TYR n 2 87 ALA n 2 88 LYS n 2 89 THR n 2 90 ASP n 2 91 SER n 2 92 ASP n 2 93 ILE n 2 94 ILE n 2 95 ALA n 2 96 LYS n 2 97 MET n 2 98 LYS n 2 99 GLY n 2 100 THR n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA occurs from Hapatitis Delta Virus pathogen, in vitro transcription with pUc19' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SNRPA_HUMAN P09012 2 ;MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMKGT ; 1 ? 2 PDB 1VC7 1VC7 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VC7 A 1 ? 100 ? P09012 1 ? 100 ? 1 100 2 2 1VC7 B 1 ? 76 ? 1VC7 98 ? 173 ? 98 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VC7 HIS A 31 ? UNP P09012 TYR 31 ENGINEERED 31 1 1 1VC7 ARG A 36 ? UNP P09012 GLN 36 ENGINEERED 36 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VC7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.27 _exptl_crystal.density_percent_sol 62.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'SrCl2, NaCl, MPD, Sodium Cacodylate, Spermine-HCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SrCl2 ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 MPD ? ? ? 1 4 1 'Sodium Cacodylate' ? ? ? 1 5 1 Spermine-HCl ? ? ? 1 6 2 SrCl2 ? ? ? 1 7 2 NaCl ? ? ? 1 8 2 MPD ? ? ? 1 9 2 'Sodium Cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-01-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0781 1.0 2 0.9787 1.0 3 0.9795 1.0 4 0.9797 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.0781, 0.9787, 0.9795, 0.9797' # _reflns.entry_id 1VC7 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.56 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 50 _reflns.number_all 17315 _reflns.number_obs 16693 _reflns.percent_possible_obs 93.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.46 _reflns_shell.percent_possible_all 75 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1VC7 _refine.ls_number_reflns_obs 15111 _refine.ls_number_reflns_all 17315 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.45 _refine.ls_percent_reflns_obs 97.31 _refine.ls_R_factor_obs 0.24088 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23897 _refine.ls_R_factor_R_free 0.27709 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 807 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.932 _refine.correlation_coeff_Fo_to_Fc_free 0.906 _refine.B_iso_mean 36.163 _refine.aniso_B[1][1] -2.26 _refine.aniso_B[2][2] -2.26 _refine.aniso_B[3][3] 3.40 _refine.aniso_B[1][2] -1.13 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.394 _refine.pdbx_overall_ESU_R_Free 0.277 _refine.overall_SU_ML 0.258 _refine.overall_SU_B 12.559 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VC7 _refine_analyze.Luzzati_coordinate_error_obs .25 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 759 _refine_hist.pdbx_number_atoms_nucleic_acid 1577 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 2389 _refine_hist.d_res_high 2.45 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 2532 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.749 2.713 ? 3771 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 1.589 5.000 ? 94 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.119 0.200 ? 412 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.020 ? 1327 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.267 0.200 ? 1231 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.256 0.200 ? 127 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.318 0.200 ? 35 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.732 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.564 1.500 ? 476 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.709 2.000 ? 767 'X-RAY DIFFRACTION' ? r_scbond_it 3.182 3.000 ? 2056 'X-RAY DIFFRACTION' ? r_scangle_it 4.474 4.500 ? 3004 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.450 _refine_ls_shell.d_res_low 2.513 _refine_ls_shell.number_reflns_R_work 1008 _refine_ls_shell.R_factor_R_work 0.364 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.366 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VC7 _struct.title 'Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Sr2+ solution' _struct.pdbx_descriptor 'PROTEIN/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VC7 _struct_keywords.pdbx_keywords TRANSLATION/RNA _struct_keywords.text 'HDV, ribozyme, RNA, U1A, precursor, TRANSLATION-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS B 22 ? SER B 35 ? LYS A 22 SER A 35 1 ? 14 HELX_P HELX_P2 2 ARG B 36 ? GLY B 38 ? ARG A 36 GLY A 38 5 ? 3 HELX_P HELX_P3 3 GLU B 61 ? GLN B 73 ? GLU A 61 GLN A 73 1 ? 13 HELX_P HELX_P4 4 SER B 91 ? LYS B 96 ? SER A 91 LYS A 96 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C SR . SR ? ? ? 1_555 A U 66 O4 ? ? B SR 201 B U 163 1_555 ? ? ? ? ? ? ? 2.682 ? metalc2 metalc ? ? C SR . SR ? ? ? 1_555 A U 23 O2 ? ? B SR 201 B U 120 1_555 ? ? ? ? ? ? ? 3.130 ? hydrog1 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 40 O2 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog2 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 40 N3 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog3 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 39 N3 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 39 O2 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 39 N4 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 38 N2 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog7 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 37 N2 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog8 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 38 N2 ? ? B C 104 B G 135 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog9 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 36 N3 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 36 O2 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 36 N4 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 35 N3 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 35 O2 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 35 N4 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 34 N1 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 34 O6 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 34 N2 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A G 14 O6 ? ? ? 1_555 A A 74 N6 ? ? B G 111 B A 171 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog19 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 75 O2 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog20 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 74 N1 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 74 N6 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 73 N1 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 73 O6 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 73 N2 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 72 N1 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 72 O6 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 72 N2 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 71 N1 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 71 O6 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 71 N2 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 70 N3 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 70 O4 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 33 N3 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog34 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 32 N1 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 32 O6 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 32 N2 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A U 23 N3 ? ? ? 1_555 A G 28 O6 ? ? B U 120 B G 125 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog41 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 42 N1 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 42 O6 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 42 N2 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 24 O2 ? ? ? 1_555 A A 45 N6 ? ? B C 121 B A 142 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog45 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 41 N1 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 41 O6 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 41 N2 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A G 32 N2 ? ? ? 1_555 A A 69 N3 ? ? B G 129 B A 166 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog49 hydrog ? ? A G 43 N3 ? ? ? 1_555 A A 45 N6 ? ? B G 140 B A 142 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog50 hydrog ? ? A G 43 N2 ? ? ? 1_555 A G 65 O6 ? ? B G 140 B G 162 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? hydrog51 hydrog ? ? A C 44 O2 ? ? ? 1_555 A A 46 N6 ? ? B C 141 B A 143 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog52 hydrog ? ? A C 44 O2 ? ? ? 1_555 A C 47 N4 ? ? B C 141 B C 144 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? hydrog53 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 141 B G 161 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog54 hydrog ? ? A A 46 N6 ? ? ? 1_555 A G 64 O6 ? ? B A 143 B G 161 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog55 hydrog ? ? A A 46 N1 ? ? ? 1_555 A G 65 N1 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog56 hydrog ? ? A A 46 N6 ? ? ? 1_555 A G 65 O6 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog57 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 64 N1 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 64 N2 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A A 48 N1 ? ? ? 1_555 A U 63 N3 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A A 48 N6 ? ? ? 1_555 A U 63 O4 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 62 N1 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 62 O6 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 62 N2 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 61 N1 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 61 O6 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 61 N2 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? A U 58 O2 ? ? ? 1_555 A C 59 N4 ? ? B U 155 B C 156 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE B 40 ? LEU B 44 ? ILE A 40 LEU A 44 A 2 ALA B 55 ? PHE B 59 ? ALA A 55 PHE A 59 A 3 THR B 11 ? ASN B 15 ? THR A 11 ASN A 15 A 4 ARG B 83 ? TYR B 86 ? ARG A 83 TYR A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU B 41 ? N LEU A 41 O ILE B 58 ? O ILE A 58 A 2 3 O ALA B 55 ? O ALA A 55 N ILE B 14 ? N ILE A 14 A 3 4 N TYR B 13 ? N TYR A 13 O GLN B 85 ? O GLN A 85 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE SR B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 U A 23 ? U B 120 . ? 1_555 ? 2 AC1 2 U A 66 ? U B 163 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VC7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VC7 _atom_sites.fract_transf_matrix[1][1] 0.009179 _atom_sites.fract_transf_matrix[1][2] 0.005300 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010599 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005215 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SR # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 98 ? ? ? B . n A 1 2 A 2 99 99 A A B . n A 1 3 U 3 100 100 U U B . n A 1 4 G 4 101 101 G G B . n A 1 5 G 5 102 102 G G B . n A 1 6 C 6 103 103 C C B . n A 1 7 C 7 104 104 C C B . n A 1 8 G 8 105 105 G G B . n A 1 9 G 9 106 106 G G B . n A 1 10 C 10 107 107 C C B . n A 1 11 A 11 108 108 A A B . n A 1 12 U 12 109 109 U U B . n A 1 13 G 13 110 110 G G B . n A 1 14 G 14 111 111 G G B . n A 1 15 U 15 112 112 U U B . n A 1 16 C 16 113 113 C C B . n A 1 17 C 17 114 114 C C B . n A 1 18 C 18 115 115 C C B . n A 1 19 A 19 116 116 A A B . n A 1 20 G 20 117 117 G G B . n A 1 21 C 21 118 118 C C B . n A 1 22 C 22 119 119 C C B . n A 1 23 U 23 120 120 U U B . n A 1 24 C 24 121 121 C C B . n A 1 25 C 25 122 122 C C B . n A 1 26 U 26 123 123 U U B . n A 1 27 C 27 124 124 C C B . n A 1 28 G 28 125 125 G G B . n A 1 29 C 29 126 126 C C B . n A 1 30 U 30 127 127 U U B . n A 1 31 G 31 128 128 G G B . n A 1 32 G 32 129 129 G G B . n A 1 33 C 33 130 130 C C B . n A 1 34 G 34 131 131 G G B . n A 1 35 C 35 132 132 C C B . n A 1 36 C 36 133 133 C C B . n A 1 37 G 37 134 134 G G B . n A 1 38 G 38 135 135 G G B . n A 1 39 C 39 136 136 C C B . n A 1 40 U 40 137 137 U U B . n A 1 41 G 41 138 138 G G B . n A 1 42 G 42 139 139 G G B . n A 1 43 G 43 140 140 G G B . n A 1 44 C 44 141 141 C C B . n A 1 45 A 45 142 142 A A B . n A 1 46 A 46 143 143 A A B . n A 1 47 C 47 144 144 C C B . n A 1 48 A 48 145 145 A A B . n A 1 49 C 49 146 146 C C B . n A 1 50 C 50 147 147 C C B . n A 1 51 A 51 148 148 A A B . n A 1 52 U 52 149 149 U U B . n A 1 53 U 53 150 150 U U B . n A 1 54 G 54 151 151 G G B . n A 1 55 C 55 152 152 C C B . n A 1 56 A 56 153 153 A A B . n A 1 57 C 57 154 154 C C B . n A 1 58 U 58 155 155 U U B . n A 1 59 C 59 156 156 C C B . n A 1 60 C 60 157 157 C C B . n A 1 61 G 61 158 158 G G B . n A 1 62 G 62 159 159 G G B . n A 1 63 U 63 160 160 U U B . n A 1 64 G 64 161 161 G G B . n A 1 65 G 65 162 162 G G B . n A 1 66 U 66 163 163 U U B . n A 1 67 G 67 164 164 G G B . n A 1 68 A 68 165 165 A A B . n A 1 69 A 69 166 166 A A B . n A 1 70 U 70 167 167 U U B . n A 1 71 G 71 168 168 G G B . n A 1 72 G 72 169 169 G G B . n A 1 73 G 73 170 170 G G B . n A 1 74 A 74 171 171 A A B . n A 1 75 C 75 172 172 C C B . n A 1 76 U 76 173 ? ? ? B . n B 2 1 MET 1 1 ? ? ? A . n B 2 2 ALA 2 2 ? ? ? A . n B 2 3 VAL 3 3 ? ? ? A . n B 2 4 PRO 4 4 4 PRO PRO A . n B 2 5 GLU 5 5 5 GLU ALA A . n B 2 6 THR 6 6 6 THR THR A . n B 2 7 ARG 7 7 7 ARG ARG A . n B 2 8 PRO 8 8 8 PRO PRO A . n B 2 9 ASN 9 9 9 ASN ASN A . n B 2 10 HIS 10 10 10 HIS HIS A . n B 2 11 THR 11 11 11 THR THR A . n B 2 12 ILE 12 12 12 ILE ILE A . n B 2 13 TYR 13 13 13 TYR TYR A . n B 2 14 ILE 14 14 14 ILE ILE A . n B 2 15 ASN 15 15 15 ASN ASN A . n B 2 16 ASN 16 16 16 ASN ASN A . n B 2 17 LEU 17 17 17 LEU LEU A . n B 2 18 ASN 18 18 18 ASN ASN A . n B 2 19 GLU 19 19 19 GLU GLU A . n B 2 20 LYS 20 20 20 LYS ALA A . n B 2 21 ILE 21 21 21 ILE ILE A . n B 2 22 LYS 22 22 22 LYS LYS A . n B 2 23 LYS 23 23 23 LYS LYS A . n B 2 24 ASP 24 24 24 ASP ASP A . n B 2 25 GLU 25 25 25 GLU GLU A . n B 2 26 LEU 26 26 26 LEU LEU A . n B 2 27 LYS 27 27 27 LYS LYS A . n B 2 28 LYS 28 28 28 LYS LYS A . n B 2 29 SER 29 29 29 SER SER A . n B 2 30 LEU 30 30 30 LEU LEU A . n B 2 31 HIS 31 31 31 HIS HIS A . n B 2 32 ALA 32 32 32 ALA ALA A . n B 2 33 ILE 33 33 33 ILE ILE A . n B 2 34 PHE 34 34 34 PHE PHE A . n B 2 35 SER 35 35 35 SER SER A . n B 2 36 ARG 36 36 36 ARG ARG A . n B 2 37 PHE 37 37 37 PHE PHE A . n B 2 38 GLY 38 38 38 GLY GLY A . n B 2 39 GLN 39 39 39 GLN GLN A . n B 2 40 ILE 40 40 40 ILE ILE A . n B 2 41 LEU 41 41 41 LEU LEU A . n B 2 42 ASP 42 42 42 ASP ASP A . n B 2 43 ILE 43 43 43 ILE ILE A . n B 2 44 LEU 44 44 44 LEU LEU A . n B 2 45 VAL 45 45 45 VAL VAL A . n B 2 46 SER 46 46 46 SER SER A . n B 2 47 ARG 47 47 47 ARG ARG A . n B 2 48 SER 48 48 48 SER SER A . n B 2 49 LEU 49 49 49 LEU LEU A . n B 2 50 LYS 50 50 50 LYS LYS A . n B 2 51 MET 51 51 51 MET MET A . n B 2 52 ARG 52 52 52 ARG ARG A . n B 2 53 GLY 53 53 53 GLY GLY A . n B 2 54 GLN 54 54 54 GLN GLN A . n B 2 55 ALA 55 55 55 ALA ALA A . n B 2 56 PHE 56 56 56 PHE PHE A . n B 2 57 VAL 57 57 57 VAL VAL A . n B 2 58 ILE 58 58 58 ILE ILE A . n B 2 59 PHE 59 59 59 PHE PHE A . n B 2 60 LYS 60 60 60 LYS LYS A . n B 2 61 GLU 61 61 61 GLU GLU A . n B 2 62 VAL 62 62 62 VAL VAL A . n B 2 63 SER 63 63 63 SER SER A . n B 2 64 SER 64 64 64 SER SER A . n B 2 65 ALA 65 65 65 ALA ALA A . n B 2 66 THR 66 66 66 THR THR A . n B 2 67 ASN 67 67 67 ASN ASN A . n B 2 68 ALA 68 68 68 ALA ALA A . n B 2 69 LEU 69 69 69 LEU LEU A . n B 2 70 ARG 70 70 70 ARG ARG A . n B 2 71 SER 71 71 71 SER SER A . n B 2 72 MET 72 72 72 MET MET A . n B 2 73 GLN 73 73 73 GLN GLN A . n B 2 74 GLY 74 74 74 GLY GLY A . n B 2 75 PHE 75 75 75 PHE PHE A . n B 2 76 PRO 76 76 76 PRO PRO A . n B 2 77 PHE 77 77 77 PHE PHE A . n B 2 78 TYR 78 78 78 TYR TYR A . n B 2 79 ASP 79 79 79 ASP ALA A . n B 2 80 LYS 80 80 80 LYS LYS A . n B 2 81 PRO 81 81 81 PRO PRO A . n B 2 82 MET 82 82 82 MET MET A . n B 2 83 ARG 83 83 83 ARG ARG A . n B 2 84 ILE 84 84 84 ILE ILE A . n B 2 85 GLN 85 85 85 GLN GLN A . n B 2 86 TYR 86 86 86 TYR TYR A . n B 2 87 ALA 87 87 87 ALA ALA A . n B 2 88 LYS 88 88 88 LYS LYS A . n B 2 89 THR 89 89 89 THR THR A . n B 2 90 ASP 90 90 90 ASP ASP A . n B 2 91 SER 91 91 91 SER SER A . n B 2 92 ASP 92 92 92 ASP ASP A . n B 2 93 ILE 93 93 93 ILE ILE A . n B 2 94 ILE 94 94 94 ILE ILE A . n B 2 95 ALA 95 95 95 ALA ALA A . n B 2 96 LYS 96 96 96 LYS LYS A . n B 2 97 MET 97 97 97 MET MET A . n B 2 98 LYS 98 98 98 LYS ALA A . n B 2 99 GLY 99 99 ? ? ? A . n B 2 100 THR 100 100 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SR 1 201 201 SR SR B . D 3 SR 1 202 202 SR SR B . E 4 HOH 1 302 302 HOH HOH B . E 4 HOH 2 305 305 HOH HOH B . E 4 HOH 3 309 309 HOH HOH B . E 4 HOH 4 316 316 HOH HOH B . E 4 HOH 5 317 317 HOH HOH B . E 4 HOH 6 321 321 HOH HOH B . E 4 HOH 7 322 322 HOH HOH B . E 4 HOH 8 324 324 HOH HOH B . E 4 HOH 9 325 325 HOH HOH B . E 4 HOH 10 327 327 HOH HOH B . E 4 HOH 11 330 330 HOH HOH B . E 4 HOH 12 333 333 HOH HOH B . E 4 HOH 13 334 334 HOH HOH B . E 4 HOH 14 340 340 HOH HOH B . E 4 HOH 15 341 341 HOH HOH B . E 4 HOH 16 343 343 HOH HOH B . E 4 HOH 17 344 344 HOH HOH B . E 4 HOH 18 347 347 HOH HOH B . E 4 HOH 19 348 348 HOH HOH B . E 4 HOH 20 350 350 HOH HOH B . E 4 HOH 21 352 352 HOH HOH B . E 4 HOH 22 353 353 HOH HOH B . F 4 HOH 1 303 303 HOH HOH A . F 4 HOH 2 304 304 HOH HOH A . F 4 HOH 3 306 306 HOH HOH A . F 4 HOH 4 307 307 HOH HOH A . F 4 HOH 5 308 308 HOH HOH A . F 4 HOH 6 310 310 HOH HOH A . F 4 HOH 7 311 311 HOH HOH A . F 4 HOH 8 312 312 HOH HOH A . F 4 HOH 9 313 313 HOH HOH A . F 4 HOH 10 314 314 HOH HOH A . F 4 HOH 11 315 315 HOH HOH A . F 4 HOH 12 318 318 HOH HOH A . F 4 HOH 13 319 319 HOH HOH A . F 4 HOH 14 320 320 HOH HOH A . F 4 HOH 15 323 323 HOH HOH A . F 4 HOH 16 326 326 HOH HOH A . F 4 HOH 17 328 328 HOH HOH A . F 4 HOH 18 329 329 HOH HOH A . F 4 HOH 19 331 331 HOH HOH A . F 4 HOH 20 335 335 HOH HOH A . F 4 HOH 21 336 336 HOH HOH A . F 4 HOH 22 337 337 HOH HOH A . F 4 HOH 23 338 338 HOH HOH A . F 4 HOH 24 339 339 HOH HOH A . F 4 HOH 25 342 342 HOH HOH A . F 4 HOH 26 345 345 HOH HOH A . F 4 HOH 27 346 346 HOH HOH A . F 4 HOH 28 349 349 HOH HOH A . F 4 HOH 29 351 351 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O4 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id U _pdbx_struct_conn_angle.ptnr1_label_seq_id 66 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id B _pdbx_struct_conn_angle.ptnr1_auth_comp_id U _pdbx_struct_conn_angle.ptnr1_auth_seq_id 163 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id SR _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id SR _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id SR _pdbx_struct_conn_angle.ptnr2_auth_seq_id 201 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id U _pdbx_struct_conn_angle.ptnr3_label_seq_id 23 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id U _pdbx_struct_conn_angle.ptnr3_auth_seq_id 120 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 86.7 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-10-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 4 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 39.2692 44.2189 91.0019 0.0640 0.0362 0.1318 0.0193 0.0528 -0.0355 5.5343 5.4426 5.0831 -1.2406 -0.3056 -0.8877 -0.0167 0.0272 -0.4564 -0.0245 0.0750 -0.4021 0.2629 0.1945 -0.0583 'X-RAY DIFFRACTION' 2 ? refined 34.9671 81.4981 76.0435 1.2162 0.3910 0.6764 0.0531 -0.0964 -0.0235 2.1219 12.5175 2.3522 -3.2910 0.9369 -3.7509 -0.6685 -0.0224 1.0008 0.7439 0.5301 -0.9190 -1.4230 -0.0537 0.1383 'X-RAY DIFFRACTION' 3 ? refined 36.5225 84.4208 79.2928 0.5393 0.5393 0.5393 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 'X-RAY DIFFRACTION' 4 ? refined 41.6453 63.0108 76.8148 0.5393 0.5393 0.5393 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 B 4 4 B 98 98 ? A A 'X-RAY DIFFRACTION' ? 2 2 A 3 100 A 75 172 ? B B 'X-RAY DIFFRACTION' ? 3 3 C 1 201 D 1 201 ? B B 'X-RAY DIFFRACTION' ? 4 4 D 1 202 D 1 202 ? B B 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 CNS phasing 1.1 ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 B G 164 ? ? O B HOH 322 ? ? 1.81 2 1 N3 B U 100 ? ? OP2 B C 103 ? ? 2.09 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 330 ? ? 1_555 O B HOH 330 ? ? 18_655 1.07 2 1 O A HOH 313 ? ? 1_555 O A HOH 313 ? ? 4_556 1.37 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B U 100 ? ? "O5'" B U 100 ? ? 1.532 1.593 -0.061 0.010 N 2 1 "C5'" B U 100 ? ? "C4'" B U 100 ? ? 1.420 1.508 -0.088 0.007 N 3 1 "C4'" B U 100 ? ? "C3'" B U 100 ? ? 1.444 1.521 -0.077 0.010 N 4 1 "C2'" B U 100 ? ? "C1'" B U 100 ? ? 1.604 1.529 0.075 0.011 N 5 1 "O3'" B G 101 ? ? P B G 102 ? ? 1.708 1.607 0.101 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B A 99 ? ? "O3'" B A 99 ? ? P B U 100 ? ? 154.23 119.70 34.53 1.20 Y 2 1 P B U 100 ? ? "O5'" B U 100 ? ? "C5'" B U 100 ? ? 101.09 120.90 -19.81 1.60 N 3 1 "C2'" B U 100 ? ? "C3'" B U 100 ? ? "O3'" B U 100 ? ? 133.97 113.70 20.27 1.60 N 4 1 "O4'" B U 100 ? ? "C1'" B U 100 ? ? N1 B U 100 ? ? 103.22 108.20 -4.98 0.80 N 5 1 "C3'" B G 101 ? ? "O3'" B G 101 ? ? P B G 102 ? ? 103.34 119.70 -16.36 1.20 Y 6 1 N1 B C 124 ? ? "C1'" B C 124 ? ? "C2'" B C 124 ? ? 122.74 114.00 8.74 1.30 N 7 1 N9 B G 140 ? ? "C1'" B G 140 ? ? "C2'" B G 140 ? ? 98.84 112.00 -13.16 1.10 N 8 1 N1 B C 146 ? ? "C1'" B C 146 ? ? "C2'" B C 146 ? ? 102.97 112.00 -9.03 1.10 N 9 1 "O5'" B C 147 ? ? P B C 147 ? ? OP2 B C 147 ? ? 96.79 105.70 -8.91 0.90 N 10 1 N1 B U 167 ? ? "C1'" B U 167 ? ? "C2'" B U 167 ? ? 104.43 112.00 -7.57 1.10 N 11 1 C A ARG 7 ? ? N A PRO 8 ? ? CA A PRO 8 ? ? 131.65 119.30 12.35 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 16 ? ? 70.14 32.50 2 1 ALA A 55 ? ? -170.94 146.88 3 1 LYS A 96 ? ? -59.25 -0.40 4 1 MET A 97 ? ? -120.30 -80.42 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 140 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.066 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 5 ? CG ? B GLU 5 CG 2 1 Y 1 A GLU 5 ? CD ? B GLU 5 CD 3 1 Y 1 A GLU 5 ? OE1 ? B GLU 5 OE1 4 1 Y 1 A GLU 5 ? OE2 ? B GLU 5 OE2 5 1 Y 1 A LYS 20 ? CG ? B LYS 20 CG 6 1 Y 1 A LYS 20 ? CD ? B LYS 20 CD 7 1 Y 1 A LYS 20 ? CE ? B LYS 20 CE 8 1 Y 1 A LYS 20 ? NZ ? B LYS 20 NZ 9 1 Y 1 A ASP 79 ? CG ? B ASP 79 CG 10 1 Y 1 A ASP 79 ? OD1 ? B ASP 79 OD1 11 1 Y 1 A ASP 79 ? OD2 ? B ASP 79 OD2 12 1 Y 1 A LYS 98 ? CG ? B LYS 98 CG 13 1 Y 1 A LYS 98 ? CD ? B LYS 98 CD 14 1 Y 1 A LYS 98 ? CE ? B LYS 98 CE 15 1 Y 1 A LYS 98 ? NZ ? B LYS 98 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B G 98 ? A G 1 2 1 Y 1 B U 173 ? A U 76 3 1 Y 1 A MET 1 ? B MET 1 4 1 Y 1 A ALA 2 ? B ALA 2 5 1 Y 1 A VAL 3 ? B VAL 3 6 1 Y 1 A GLY 99 ? B GLY 99 7 1 Y 1 A THR 100 ? B THR 100 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VC7 'double helix' 1VC7 'a-form double helix' 1VC7 'bulge loop' 1VC7 'mismatched base pair' 1VC7 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 24 1_555 A G 42 1_555 -0.474 -0.360 0.071 13.987 -26.213 -5.223 1 B_C121:G139_B B 121 ? B 139 ? 19 1 1 A C 25 1_555 A G 41 1_555 -0.160 -0.349 -0.382 4.838 -14.068 -2.412 2 B_C122:G138_B B 122 ? B 138 ? 19 1 1 A G 4 1_555 A U 40 1_555 -2.180 -0.812 -0.070 -3.006 -9.465 -5.040 3 B_G101:U137_B B 101 ? B 137 ? 28 1 1 A G 5 1_555 A C 39 1_555 -0.423 -0.127 -0.251 -2.276 -4.747 9.772 4 B_G102:C136_B B 102 ? B 136 ? 19 1 1 A C 6 1_555 A G 38 1_555 -0.089 0.625 -0.958 9.515 3.210 13.192 5 B_C103:G135_B B 103 ? B 135 ? ? ? 1 A C 7 1_555 A G 37 1_555 0.712 0.509 -0.866 15.640 -3.289 8.897 6 B_C104:G134_B B 104 ? B 134 ? ? ? 1 A G 8 1_555 A C 36 1_555 0.230 -0.033 0.363 10.936 -1.945 11.881 7 B_G105:C133_B B 105 ? B 133 ? 19 1 1 A G 9 1_555 A C 35 1_555 -0.848 -0.405 0.130 8.865 -10.236 5.446 8 B_G106:C132_B B 106 ? B 132 ? 19 1 1 A C 10 1_555 A G 34 1_555 0.878 0.093 -0.259 7.647 -0.323 5.249 9 B_C107:G131_B B 107 ? B 131 ? 19 1 1 A G 14 1_555 A C 75 1_555 -1.351 0.295 0.504 -2.222 -12.861 9.197 10 B_G111:C172_B B 111 ? B 172 ? ? 1 1 A U 15 1_555 A A 74 1_555 -0.165 -0.338 0.690 2.827 -6.455 -0.859 11 B_U112:A171_B B 112 ? B 171 ? 20 1 1 A C 16 1_555 A G 73 1_555 -0.696 -0.289 -0.357 16.641 -17.606 -7.650 12 B_C113:G170_B B 113 ? B 170 ? 19 1 1 A C 17 1_555 A G 72 1_555 0.027 0.047 0.171 1.966 -8.452 6.294 13 B_C114:G169_B B 114 ? B 169 ? 19 1 1 A C 18 1_555 A G 71 1_555 -0.302 -0.292 0.228 -2.696 -4.965 -2.466 14 B_C115:G168_B B 115 ? B 168 ? 19 1 1 A A 19 1_555 A U 70 1_555 -0.241 -0.098 0.451 6.464 -13.290 13.998 15 B_A116:U167_B B 116 ? B 167 ? 20 1 1 A G 20 1_555 A C 33 1_555 -0.298 0.373 0.314 3.525 -10.150 6.645 16 B_G117:C130_B B 117 ? B 130 ? ? 1 1 A C 21 1_555 A G 32 1_555 -0.309 -0.308 0.484 -1.130 -15.146 -2.778 17 B_C118:G129_B B 118 ? B 129 ? 19 1 1 A C 22 1_555 A G 31 1_555 -0.137 -0.500 0.799 -11.179 -11.393 -12.482 18 B_C119:G128_B B 119 ? B 128 ? 19 1 1 A U 23 1_555 A G 28 1_555 2.260 0.008 0.018 1.082 -2.446 -83.913 19 B_U120:G125_B B 120 ? B 125 ? ? ? 1 A A 46 1_555 A G 65 1_555 0.301 1.412 -0.232 -5.525 -23.456 -6.499 20 B_A143:G162_B B 143 ? B 162 ? 8 ? 1 A C 47 1_555 A G 64 1_555 0.325 0.042 0.404 8.149 -22.584 2.849 21 B_C144:G161_B B 144 ? B 161 ? 19 1 1 A A 48 1_555 A U 63 1_555 -0.047 -0.111 0.154 6.551 -12.598 4.932 22 B_A145:U160_B B 145 ? B 160 ? 20 1 1 A C 49 1_555 A G 62 1_555 -0.034 -0.300 0.058 1.393 -16.441 0.489 23 B_C146:G159_B B 146 ? B 159 ? 19 1 1 A C 50 1_555 A G 61 1_555 -0.268 -0.201 0.239 -0.892 -6.320 -2.563 24 B_C147:G158_B B 147 ? B 158 ? 19 1 1 A U 58 1_555 A C 59 1_555 -6.732 1.050 0.333 -12.831 -17.753 -3.106 25 B_U155:C156_B B 155 ? B 156 ? ? 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 24 1_555 A G 42 1_555 A C 25 1_555 A G 41 1_555 0.168 -1.846 3.572 3.030 7.865 36.245 -3.981 0.155 3.121 12.437 -4.791 37.180 1 BB_C121C122:G138G139_BB B 121 ? B 139 ? B 122 ? B 138 ? 1 A C 25 1_555 A G 41 1_555 A G 4 1_555 A U 40 1_555 2.685 -2.928 3.806 -0.404 4.159 6.105 -34.994 -22.003 1.351 34.255 3.328 7.397 2 BB_C122G101:U137G138_BB B 122 ? B 138 ? B 101 ? B 137 ? 1 A G 4 1_555 A U 40 1_555 A G 5 1_555 A C 39 1_555 -0.141 -1.520 3.103 0.591 2.237 44.513 -2.197 0.237 3.025 2.951 -0.780 44.570 3 BB_G101G102:C136U137_BB B 101 ? B 137 ? B 102 ? B 136 ? 1 A G 5 1_555 A C 39 1_555 A C 6 1_555 A G 38 1_555 0.540 -2.193 3.002 5.816 5.612 26.653 -5.728 0.087 2.554 11.832 -12.263 27.830 4 BB_G102C103:G135C136_BB B 102 ? B 136 ? B 103 ? B 135 ? 1 A C 6 1_555 A G 38 1_555 A C 7 1_555 A G 37 1_555 0.128 -1.391 3.400 3.732 3.975 26.157 -4.057 0.704 3.145 8.663 -8.133 26.710 5 BB_C103C104:G134G135_BB B 103 ? B 135 ? B 104 ? B 134 ? 1 A C 7 1_555 A G 37 1_555 A G 8 1_555 A C 36 1_555 0.205 -2.310 3.392 -6.830 6.202 26.766 -6.098 -1.929 2.667 12.919 14.227 28.284 6 BB_C104G105:C133G134_BB B 104 ? B 134 ? B 105 ? B 133 ? 1 A G 8 1_555 A C 36 1_555 A G 9 1_555 A C 35 1_555 -0.512 -1.885 3.050 0.098 10.789 25.420 -6.111 1.094 2.088 23.229 -0.210 27.580 7 BB_G105G106:C132C133_BB B 105 ? B 133 ? B 106 ? B 132 ? 1 A G 9 1_555 A C 35 1_555 A C 10 1_555 A G 34 1_555 0.691 -2.085 3.291 1.048 7.559 36.679 -4.189 -0.946 2.839 11.854 -1.644 37.437 8 BB_G106C107:G131C132_BB B 106 ? B 132 ? B 107 ? B 131 ? 1 A G 14 1_555 A C 75 1_555 A U 15 1_555 A A 74 1_555 -0.889 -1.328 3.170 -4.847 2.585 35.537 -2.511 0.769 3.159 4.204 7.883 35.945 9 BB_G111U112:A171C172_BB B 111 ? B 172 ? B 112 ? B 171 ? 1 A U 15 1_555 A A 74 1_555 A C 16 1_555 A G 73 1_555 0.393 -1.736 2.661 7.174 -1.571 28.014 -3.181 0.553 2.766 -3.176 -14.506 28.942 10 BB_U112C113:G170A171_BB B 112 ? B 171 ? B 113 ? B 170 ? 1 A C 16 1_555 A G 73 1_555 A C 17 1_555 A G 72 1_555 0.163 -1.817 3.554 -6.485 8.909 36.708 -3.914 -1.080 2.979 13.770 10.023 38.271 11 BB_C113C114:G169G170_BB B 113 ? B 170 ? B 114 ? B 169 ? 1 A C 17 1_555 A G 72 1_555 A C 18 1_555 A G 71 1_555 -0.452 -2.289 3.192 0.218 2.723 31.064 -4.749 0.881 2.982 5.073 -0.406 31.181 12 BB_C114C115:G168G169_BB B 114 ? B 169 ? B 115 ? B 168 ? 1 A C 18 1_555 A G 71 1_555 A A 19 1_555 A U 70 1_555 0.252 -1.649 2.916 -2.649 6.266 26.629 -4.754 -1.071 2.435 13.329 5.636 27.469 13 BB_C115A116:U167G168_BB B 115 ? B 168 ? B 116 ? B 167 ? 1 A A 19 1_555 A U 70 1_555 A G 20 1_555 A C 33 1_555 0.658 -1.733 3.243 -1.969 3.063 44.120 -2.577 -1.051 3.092 4.069 2.616 44.263 14 BB_A116G117:C130U167_BB B 116 ? B 167 ? B 117 ? B 130 ? 1 A G 20 1_555 A C 33 1_555 A C 21 1_555 A G 32 1_555 0.237 -1.605 3.292 0.667 -1.412 33.727 -2.530 -0.298 3.359 -2.432 -1.149 33.762 15 BB_G117C118:G129C130_BB B 117 ? B 130 ? B 118 ? B 129 ? 1 A C 21 1_555 A G 32 1_555 A C 22 1_555 A G 31 1_555 -0.473 -1.870 3.414 -0.511 3.630 35.516 -3.585 0.696 3.219 5.931 0.835 35.698 16 BB_C118C119:G128G129_BB B 118 ? B 129 ? B 119 ? B 128 ? 1 A C 22 1_555 A G 31 1_555 A U 23 1_555 A G 28 1_555 -2.038 -1.279 2.838 7.350 -0.849 61.672 -1.208 2.260 2.620 -0.825 -7.141 62.071 17 BB_C119U120:G125G128_BB B 119 ? B 128 ? B 120 ? B 125 ? 1 A A 46 1_555 A G 65 1_555 A C 47 1_555 A G 64 1_555 0.905 -0.819 2.697 -4.634 7.414 37.848 -1.944 -1.807 2.378 11.248 7.030 38.809 18 BB_A143C144:G161G162_BB B 143 ? B 162 ? B 144 ? B 161 ? 1 A C 47 1_555 A G 64 1_555 A A 48 1_555 A U 63 1_555 0.141 -1.580 3.060 1.326 11.714 31.103 -4.440 -0.057 2.333 20.928 -2.369 33.211 19 BB_C144A145:U160G161_BB B 144 ? B 161 ? B 145 ? B 160 ? 1 A A 48 1_555 A U 63 1_555 A C 49 1_555 A G 62 1_555 -0.320 -1.167 3.393 -1.248 1.089 32.660 -2.267 0.345 3.363 1.935 2.218 32.701 20 BB_A145C146:G159U160_BB B 145 ? B 160 ? B 146 ? B 159 ? 1 A C 49 1_555 A G 62 1_555 A C 50 1_555 A G 61 1_555 0.365 -2.191 3.338 -0.550 5.008 31.248 -4.914 -0.768 2.954 9.221 1.012 31.642 21 BB_C146C147:G158G159_BB B 146 ? B 159 ? B 147 ? B 158 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'STRONTIUM ION' SR 4 water HOH #